Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tsu08g00528 ATGGGGAATCAAAAGATTAAATGGAcctcagaagaagaagaagcactTGTTGCAGGAATCAAAAAACACGGTGCTGGAAAATGGAAAGCCATTCTTCTTGATCCTCAGTTTGCTCCTTTACTCACTTCTCGTTCCAACATCGACCTCAAggATAAATGGCGAAATATGAATGTTTATGTTAATACTCAAGGTGTTAGGACTCCTAAGCCCAAAGTTGCTGGTGATATTGTTATCAATGATTCTTGTCAAAATGAACAAGATGTTAATACCCCTCCAAGGTATAATGCCATGATTTTTGAAGCTCTATCTACATTGAAGGACACTAATGGGTCCGACCTAAACGCCATTGCTAGTTTCATCGAGCAAAAGCATCAGGTTCCTCAAAATTTCAGAAGGACACTGAGTTCAAGGTTGAGGACCCTTGTGAACCAAGAGAAGCTTGAAAAGGTACAAAATTGTTAcaagataaaaaaagaaacctcATTGGTGAcaaaatcatcttcatcaaaacaaaaggCAATCAGGCCACAACAGCAATCATCAGTAGCTGATGATATGATGAAGAAAGCAGCTGATACTGCAGCATACATAGTTGCCGAGGCTGAAAACAAATCATATCGGGCAGTTGAGGCATGCAAGGAGACTGAAAGATTCTCACGCTTGGCCGAAGAAAATGATGCAATGTTAATGCTAGCAGAACAACTTTATGACCAATGTTTGCGCGGCGAAACTGTCAAGTGGGCAGTGGATATTGAACTGGTTCAACCATCAGATCCGAGGAGTTTCTTCCTTCGCTATCTCTTCATTCCTTCTCTTCTCTATCTATTCTCTCAACTCTTCAACGCTCTACCAgTGATGGCAGGTTTGGCTCCAGAAGGATCACAATTTGACGCTCGTCATTATGACACTAAGATGAATGAACTGCTTGCCAGTGATGGGCAAGATTTCATCACTTCATATGATGAAGTCTATGATAGCTTTGATTCTATGGGGCTGCAAGAAAATCTTCTTCGAGGCATATATGCTTACGGTTTTGAGAGGCCTTCTGCAATCCAGCAAAGGGGAATTGTTCCATTCTGCAAAGGTCTTGATGTCATTCAACAAGCTCAGTCAGGAACCGGTAAGACAGCAACATTCTGTTCTGGAATTTTACAGCAGCTTGATTATGGATTGGTTCAATGCCAAGCTTTGGTTTTGGCCCCAACAAGAGAACTCGCTCAACAGATTGAGAAGGTTATGCGAGCTCTTGGTGATTACCTTGGTGTTAAGGTTCATGCTTGTGTTGGTGGGACAAGTGTTCGGGAGGATCAGCGCATTCTCCAAGCTGGTGTTCACACTGTTGTTGGTACTCCAGGGCGTGTGTTTGATATGTTGCGGAGGCAGTCTCTTCGCTCTGATTGCATAAAGATGTTTGTTTTGGATGAGGCTGACGAAATGCTTTCACGTGGTTTCAAGGATCAGATCTATGACATCTTCCAGTTACTACCAGGCAAAATTCAGGTCGGAGTATTTTCGGCTACAATGCCACCGGAAGCCCTTGAGATTACTAGAAAGTTCATGAATAAGCCAGTGAGAATTCTGGTGAAGCGTGACGAGCTGACTCTTGAAGGTATCAAGCAGTTTTATGTCAATGTCGATAAGGAAGAGTGGAAACTAGAGACATTATGCGATCTCTACGAGACTTTAGCCATCACTCAGAGTGTCATTTTCGTGAATACAAGGCGCAAAGTGGACTGGCTCACTGACAAAATGCGAAGCGCCGACCATACAGTCTCGGCCACTCATGGTGACATGGACCAGAACACCAGGGATATCATCATGCGTGAGTTCCGGTCTGGCTCTTCTCGAGTTCTTATTACCACTGACCTCCTTGCTCGTGGTATAGATGTGCAGCAAGTTTCTTTGGTCATAAATTATGATCTCCCTACTCAACCTGAAAACTATCTTCACCGTATAGGTCGTAGTGGACGATTTGGACGAAAAGGTGTTGCTATAAACTTTGTAACATTGGATGATGCTAGAATGCTTGCTGATATTCAGAAATTCTACAATGTCAATGTAGAGGAGCTTCCATCAAATGTTGCTGATCTACTCTAA 2097 0.4154 MGNQKIKWTSEEEEALVAGIKKHGAGKWKAILLDPQFAPLLTSRSNIDLKDKWRNMNVYVNTQGVRTPKPKVAGDIVINDSCQNEQDVNTPPRYNAMIFEALSTLKDTNGSDLNAIASFIEQKHQVPQNFRRTLSSRLRTLVNQEKLEKVQNCYKIKKETSLVTKSSSSKQKAIRPQQQSSVADDMMKKAADTAAYIVAEAENKSYRAVEACKETERFSRLAEENDAMLMLAEQLYDQCLRGETVKWAVDIELVQPSDPRSFFLRYLFIPSLLYLFSQLFNALPVMAGLAPEGSQFDARHYDTKMNELLASDGQDFITSYDEVYDSFDSMGLQENLLRGIYAYGFERPSAIQQRGIVPFCKGLDVIQQAQSGTGKTATFCSGILQQLDYGLVQCQALVLAPTRELAQQIEKVMRALGDYLGVKVHACVGGTSVREDQRILQAGVHTVVGTPGRVFDMLRRQSLRSDCIKMFVLDEADEMLSRGFKDQIYDIFQLLPGKIQVGVFSATMPPEALEITRKFMNKPVRILVKRDELTLEGIKQFYVNVDKEEWKLETLCDLYETLAITQSVIFVNTRRKVDWLTDKMRSADHTVSATHGDMDQNTRDIIMREFRSGSSRVLITTDLLARGIDVQQVSLVINYDLPTQPENYLHRIGRSGRFGRKGVAINFVTLDDARMLADIQKFYNVNVEELPSNVADLL 698
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tsu08g00528 698 Gene3D - 315 533 IPR027417 -
Tsu08g00528 698 MobiDBLite consensus disorder prediction 165 184 - -
Tsu08g00528 698 SUPERFAMILY "Winged helix" DNA-binding domain 90 164 IPR036390 -
Tsu08g00528 698 SMART h15plus2 88 153 IPR005818 GO:0000786|GO:0003677|GO:0006334
Tsu08g00528 698 Pfam Myb-like DNA-binding domain 7 56 IPR001005 -
Tsu08g00528 698 CDD SANT_TRF 6 57 - -
Tsu08g00528 698 Pfam DEAD/DEAH box helicase 350 511 IPR011545 GO:0003676|GO:0005524
Tsu08g00528 698 ProSiteProfiles DEAD-box RNA helicase Q motif profile. 325 353 IPR014014 GO:0003724
Tsu08g00528 698 ProSitePatterns DEAD-box subfamily ATP-dependent helicases signature. 472 480 IPR000629 -
Tsu08g00528 698 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 537 698 IPR001650 -
Tsu08g00528 698 PANTHER EUKARYOTIC INITIATION FACTOR 4A-2 308 698 - -
Tsu08g00528 698 Pfam linker histone H1 and H5 family 92 151 IPR005818 GO:0000786|GO:0003677|GO:0006334
Tsu08g00528 698 SUPERFAMILY Homeodomain-like 3 58 IPR009057 -
Tsu08g00528 698 ProSiteProfiles Myb-like domain profile. 1 57 IPR001005 -
Tsu08g00528 698 CDD DEADc_EIF4A 330 527 - -
Tsu08g00528 698 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 356 526 IPR014001 -
Tsu08g00528 698 CDD H15 90 173 IPR005818 GO:0000786|GO:0003677|GO:0006334
Tsu08g00528 698 Gene3D - 2 58 - -
Tsu08g00528 698 SMART helicmild6 578 659 IPR001650 -
Tsu08g00528 698 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 1 56 IPR017930 -
Tsu08g00528 698 ProSiteProfiles Linker histone H1/H5 globular (H15) domain profile. 90 158 IPR005818 GO:0000786|GO:0003677|GO:0006334
Tsu08g00528 698 Gene3D - 87 174 IPR036388 -
Tsu08g00528 698 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 394 679 IPR027417 -
Tsu08g00528 698 CDD SF2_C_DEAD 538 668 - -
Tsu08g00528 698 Pfam Helicase conserved C-terminal domain 551 659 IPR001650 -
Tsu08g00528 698 PANTHER RNA HELICASE 308 698 - -
Tsu08g00528 698 Gene3D - 534 698 IPR027417 -
Tsu08g00528 698 SMART sant 4 59 IPR001005 -
Tsu08g00528 698 SMART ultradead3 344 541 IPR014001 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tsu08g00528 Tsu-Chr8 5513958 5524163 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tsu08g00528 286 698 Eukaryotic Initiation Factors Gene Family AT1G72730 88.647 0.0 771
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB-related Tsu08g00528 DEAD 5.9e-39 CL0023
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tsu08g00528 K03257 - gmx:100809395 792.727