Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tsu08g00527 ATGTTAGTTCCTGCAAATGTAGCACTGTTGTTTTTAGTCCTAACACCATCTTATTGGACCACATGGCGTTTAGGGAAGCCGTCTTCAATCCAGCAAAGGGGAATTGTTCCTTTCTGCAAAGGTCTGGATGTCATTCTACATGCTCCGTCTGGAACAGGAAAGTCGGCAACATTCTGTATTGGAATTTTGCAGAAGCTTGATTATGGATTGGTTCAGTGTCAGGCTTTGGTTTTGGCACCAACCAGTGAGCTAGCATTACATATTCAGAATGTTATGCGAGATCTTGGTAAATTCCTTGGTGTTAAGGTTCATGCTTGTTTTGGCGGGACAAGTGTTCGTAGGGATCAGCGCATTCTCCAAAATGGCGTTCACACTGTTGTTGGTACTCCGGGGCGTGTGTATCACATGCTGCAGAAGGGCTATCTTCGCCCTGATGGCATAAAGATGTTTGTTTTGGATGAGCTTAATGAAATGCTTTCACCTGGTTTCAAGGATAAGATCCATGAAATCTTCAAGCTACTGCCTAGCAAAATTCAGGTTGGAGTAATCTCTGCTGCAATGCCACCTGAAGCCGTTGAGATTGCTAGGAAGTTCATGAAAAAGCCGGTGATAATTCAGGAAAAGCATGGTGAGCCGGTGCGAGTTCAGGAAAAGCGTGGTGAGCTAGTGAGTATTCAGGAAAAGTGTGATGAGTCAGTGAGAGTACATGAAAAGTGTGATGAGTCAGTGAGAGTTCAGGAAAAGTGTGATGAGCCGGTGAGAGTTCAGGAAAAGCGTGATGAGCTAACCCTTGAGGGTATCAAGCAGTTTTATGTCAATATTGAAAAAGAAGAGTGGAAGCTAGATACATTAAGCGACTTCTACGAGACTCTATCCACTACTCGGTGTATCATTTTTGTGAATACCGGGCGCAAAGTGGACTGGCTCACTGACAAGATGCAAAGCAAAAACAATACAGTATCGGCCATCCATGGTGACATGGACCAGAACACTAGAGATATTGTCGTGCGTGAGTTCCAGTCTGGCTCTCCTCAAGTTCTCATTACCACCGACCCCTTGGTCCCCGGTATCGATGTGCAAGAAGCGTCTCTGGTCGTAAACTATGATCTCCCAACTCTACCTGAAAACTATCTCCACCGTATGGGTTGTGGTGGACAATTTGGAAGAAAAGGTATTGCTATAAACTTTGTGACATTGAATGATTCTCGAACGCTTGCTGGTATTCAGAAATTCTACAATGTCAGTATGGAGGAGGTGCCATCAAATGTTGCTGATCTACTCTTATGA 1287 0.4437 MLVPANVALLFLVLTPSYWTTWRLGKPSSIQQRGIVPFCKGLDVILHAPSGTGKSATFCIGILQKLDYGLVQCQALVLAPTSELALHIQNVMRDLGKFLGVKVHACFGGTSVRRDQRILQNGVHTVVGTPGRVYHMLQKGYLRPDGIKMFVLDELNEMLSPGFKDKIHEIFKLLPSKIQVGVISAAMPPEAVEIARKFMKKPVIIQEKHGEPVRVQEKRGELVSIQEKCDESVRVHEKCDESVRVQEKCDEPVRVQEKRDELTLEGIKQFYVNIEKEEWKLDTLSDFYETLSTTRCIIFVNTGRKVDWLTDKMQSKNNTVSAIHGDMDQNTRDIVVREFQSGSPQVLITTDPLVPGIDVQEASLVVNYDLPTLPENYLHRMGCGGQFGRKGIAINFVTLNDSRTLAGIQKFYNVSMEEVPSNVADLLL 428
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tsu08g00527 428 Pfam Helicase conserved C-terminal domain 281 382 IPR001650 -
Tsu08g00527 428 CDD SF2_C_DEAD 267 397 - -
Tsu08g00527 428 Gene3D - 259 427 IPR027417 -
Tsu08g00527 428 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 35 205 IPR014001 -
Tsu08g00527 428 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 266 427 IPR001650 -
Tsu08g00527 428 PANTHER RNA HELICASE 23 211 - -
Tsu08g00527 428 PANTHER RNA HELICASE 249 427 - -
Tsu08g00527 428 Gene3D - 16 207 IPR027417 -
Tsu08g00527 428 PANTHER EUKARYOTIC INITIATION FACTOR 4A-1 23 211 - -
Tsu08g00527 428 PANTHER EUKARYOTIC INITIATION FACTOR 4A-1 249 427 - -
Tsu08g00527 428 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 73 404 IPR027417 -
Tsu08g00527 428 SMART helicmild6 307 388 IPR001650 -
Tsu08g00527 428 SMART ultradead3 23 216 IPR014001 -
Tsu08g00527 428 Pfam DEAD/DEAH box helicase 29 192 IPR011545 GO:0003676|GO:0005524
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tsu08g00527 Tsu-Chr8 5504399 5506123 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tsu08g00527 26 427 Eukaryotic Initiation Factors Gene Family AT1G72730 63.682 0.0 523
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tsu08g00527 K03257 - gmx:100817948 521.546
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Tsu02g05346 02 62045738 62048961 Tsu08g00527 08 5504399 5506123 PCT