Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tsu08g00525 atgGAACCTCGAATTGGGAATAAGTTCCGTCTTGGTCGGAAAATTGGTAGCGGATCTTTTGGAGAGATCTATCTCGGTACCAATATTCAAACAAATGAAGAAGTTGCGGTTAAGCTTGAAAATGTCAAAACCAAGCACCCGCAATTGTTGTATGAAGCAAAGCTGTATAAACTACTGCAAGGAGGAACTGGGATTCCGAATGTGAAATGGTCCGGTGTCGAAGGAGAGTACAATGTCCTTGTGATGGATTTACTTGGCCCTAGTCTTGAGGATTTGTTCAATTTCTGTAACAGGAAGTTGTCCCTCAAAACTGTTCTCATGCTTGCTGATCAAATGATAAATCGAGTCGAATTTTTTCATTCTAAGTCATTTTTACATCGGGACATCAAGCCAGACAACTTCCTCATGGGTTTAGGAAGGCGTGCAAATCAAGTGTACGTCATTGACTTTGGTCTTGCTAAGAAATTCAGAGACAGCACAAATCGGCATATTCCGTACAGAGAGAATAAGAATCTGACCGGAACTGCTAGGTATGCTAGTATGAATACTCATCTTGGAATTGAGCAAAGTCGTAGGGATGATTTAGAGTCACTTGGATATGTTCTTATGTATTTCTTAAGAGGAAGTCTGCCATGGCAGGGATTGAAAGCCGGTACTAAGAAGCAGAAGTATGAGAGAATCAGTGAGAAGAAAGTTTCTACTTCTATTGAATCTCTCTGCCTTGGCTATCCCTCAGAATTTGCATCATACTTCCATTATTGTCGGTCGCTGAGGTTTGATGATAAACCTGATTATGCTTATCTGAAAAGACTTTTGCGCGACCTTTTCATCCGTGAAGGATTCCAGTTTGATTATGTCTTCGATTGGACCATTTTGAAATATCAGCAATCTCAAATTGCCCCTGCTCCTTCCCGTGGTATTGGTCTTGCTGCTGGACCAAGTTCTGGTCTGCCGCTAACTTCTGCAAATGCTGATGGACAGTCAGGTATCCTTGTTCTTTTAGCTTCACATCCCTGA 1017 0.4159 MEPRIGNKFRLGRKIGSGSFGEIYLGTNIQTNEEVAVKLENVKTKHPQLLYEAKLYKLLQGGTGIPNVKWSGVEGEYNVLVMDLLGPSLEDLFNFCNRKLSLKTVLMLADQMINRVEFFHSKSFLHRDIKPDNFLMGLGRRANQVYVIDFGLAKKFRDSTNRHIPYRENKNLTGTARYASMNTHLGIEQSRRDDLESLGYVLMYFLRGSLPWQGLKAGTKKQKYERISEKKVSTSIESLCLGYPSEFASYFHYCRSLRFDDKPDYAYLKRLLRDLFIREGFQFDYVFDWTILKYQQSQIAPAPSRGIGLAAGPSSGLPLTSANADGQSGILVLLASHP 338
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tsu08g00525 338 CDD STKc_CK1_delta_epsilon 8 281 - -
Tsu08g00525 338 ProSitePatterns Serine/Threonine protein kinases active-site signature. 124 136 IPR008271 GO:0004672|GO:0006468
Tsu08g00525 338 Pfam Protein kinase domain 10 223 IPR000719 GO:0004672|GO:0005524|GO:0006468
Tsu08g00525 338 ProSitePatterns Protein kinases ATP-binding region signature. 15 38 IPR017441 GO:0005524
Tsu08g00525 338 PANTHER CASEIN KINASE-RELATED 1 306 - -
Tsu08g00525 338 ProSiteProfiles Protein kinase domain profile. 9 277 IPR000719 GO:0004672|GO:0005524|GO:0006468
Tsu08g00525 338 SUPERFAMILY Protein kinase-like (PK-like) 5 289 IPR011009 -
Tsu08g00525 338 SMART serkin_6 9 286 IPR000719 GO:0004672|GO:0005524|GO:0006468
Tsu08g00525 338 Gene3D Transferase(Phosphotransferase) domain 1 1 306 - -
Tsu08g00525 338 PANTHER CASEIN KINASE 1-LIKE PROTEIN 2 1 306 IPR030509 GO:0004672|GO:0005524
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tsu08g00525 Tsu-Chr8 5492041 5497737 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tsu08g00525 7 222 EF-hand Containing Proteins AT2G17890 26.339 2.12e-13 69.3
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK CK1_CK1 Tsu08g00525 Pkinase 3.9e-27 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tsu08g00525 K02218 - qsu:111997482 612.453
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Tsu02g05348 02 62054056 62059481 Tsu08g00525 08 5492041 5497737 PCT