Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tsu08g00524 ATGGCGCATGGAAGGATAAGGGCGAGGCTCCGAAGGAGCCATTTTTATACATTTGGTTGTCTTCGACCTTGTACCACTGACGAGGGGCCTCATCCACTTCAAGGTCCTGGGTTCTCGCGAACTGTGCACTGTAACCAACCTCAGATCCATGAGAAGAGACCTTTCTATTACTGCAAAAATGATATTTCCACAACTAAATATAATGTGCTTACATTTTTTCCTAAGGCACTTTTTGAACAGTTTCGTAGAGTTGCTAATATATACTTTCTTTTGGCTGCGTGTATCTCAGCCTCTCCAATTTCACCTTTTAGTCCTCTGAGTATGATTGCTCCTTTGGCATTTGTTGTTGGGCTTAGTATGGCAAAGGAAGCATTGGAAGATTCGCGCAGGTTCCTTCAGGATGTTAAAGTTAACCACCGGAAAGTTAATCATCATAAAGGTGATGGTGTTTTTGGTCACAGGTTGTGGCAGAACATTATGGTTGGGGATGTAGTAAAAGTAGAAAAGGACAAGTTTTTTCCAGCTGATTTGCTGCTCTTGTCATCAAGTTATGAGGACGGGATATGCTATGTGGAGACAATGAATTTAGATGGTGAGACCAACTTGAAGGTAAAAAGATCTTTGGAGTCTACCTTGGCCCTAGATAGTGATGAAGCGTTTAAGGATTTCATTGGAACAATAAGATGTGAAGACCCAAACCCCAATCTTTACACTTTTGTTGGCAACTTGGAGCATGAGCGCCAAGTTTATCCTCTTGATCCTAGTCAAATTCTCCTCCGAGATTCTAAGCTCAGGAACACGGAATACATCTATGGAGTGGTCATTTTCACTGGCCACGACAGTAAAGTCATGCAGAACTCCACAAGATCCCCTTCAAAAAGGAGCACGATAGAAGAGAAGATGGATTATATCATATACACTCTCTTCACTGTCCTTATTTTTATATCTATCATTAGTTCCATAGGATTCATTGTCAAGATTAAGTTCCAAACCCCGACGTGGTGGTACTTACGCCCTGACAATATCGAATCCCAGTATGATCCCCAGAAAGTTGGAGTGGCTGGGTTGAGTCATTTGGTTACTGCTCTCATTCTCTATGGATATTTGATACCCATCTCACTTTATGTTTCCATTGAGGTCGTAAAGGTTTTACAGGCAACCTTCATTAACCAAGACATTCATATGTATGATGAAGAAACCGGAACTCCAGCTGACGCACGGACTTCAAATTTGAATGAAGAATTGGGTCAGGTCGATACAATTCTCTCTGATAAAACTGGAACTTTAACCTGCAATCAGATGGACTTTTTGAAGTGCTCTATTGCAGGTACTCCATATGGTGTGTGTTCTAGTGAAGTTGAAGTTGCTGCAGCaaagcagatagcttctgatctTGAGGACGACGATTCAGATCTCTCCAATTTCCCAATGCCTAATAAGAAAGGACATCATGTTTCATGGGAAAATGTTGGAGTAGCTGAAGAATATGAACTAGAGACTGTTGTTACTTCCAAAGGTGATGAGGATGAAAAGCATGCCATAAAGGGATTTGGTTTTGAAGACGACCGTCTCATGAATGCTAATTGGTTGCAAGAGCCCAATACCGAtgacattttattatttttccgAATACTTGCTGTTTGCCATACTGCCATTCCTGAGTTGAATGAGGAAACAGGCAGTTTTACATATGAAGCAGAGTCTCCAGATGAAGGAGCTTTTCTAGTTGCAGCAAGAGAATTTGGCTTTGAGTTTTGTAGGAGGACTCAGTCAAGTATTTTCACACGTGAAAGAATTTCTGCTTCAGGGCAAGTGGTTGAAAGGGAGTACAAACTCTTAAATCTACTAGATTTCACAAGTAAAAGAAAGCGTATGTCAGTGATTGTCCGTGATGAGGAGGGCCAACTTTTTCTTCTGTGCAAAGGGGCTGACAGTATCATATTTGATCGTTTGTCCAAGAATGGAAAAGTTTATCTGGAGGCTACTACCATGCATTTAAATGATTATGGAGAAGCAGGTTTGCGAACACTAGCTTTGGCCTATAGAAGGCTTGAAGAAAAAGAGTACTCAGATTGGAACGATGAGTTTCAGAAAGCCAAAGCAGCTGTTGGGGCTGATAGAGATGCAATGCTTGAGCGGGTATCAGAGATAATGGAAAAAGAGTTGATTCTTGTTGGGGCTACTGCTATAGAAGACAAACTGCAGAAAGGGGTTCCGGGTTGCATTGATAAACTTGCTCAAGCTGGTCTCAAGATTTGGGTATTGACAGGGGATAAGATGGAAACTGCAATCAACATTGGATTTTCCTGCAGTTTGCTTCGACAGGGCATGAAGCAGATCTGTATAACTACAAATTCAGATTCCAATGATGTCAAACAGGCCATCAAGGACAGCATATTAAATCAAATCACCAATGCTACACAAATGATAAAGCTGGAGAAGGACCCTCATGCTGCATTTGCATTAATTATTGATGGGAAAACTCTGACATACACTTTAGAAGATGACCTGAAGCACCAATTTTTGGCTCTGGCAGTTGATTGTGCATCTGTCATCTGTTGTCGTGTGTCTCCCAAGCAAAAGGCACTGGTCACAAGGTTGGTAAAAGAAGGATCTGGGAAGACCACTCTCGCAATAGGTGATGGTGCAAATGATGTTGGCATGATACAAGAAGCAGATATTGGTGTTGGAATCAGTGGGGTTGAAGGTATGCAGGCAGTGATGGCTAGTGACTTCTCGATTGCCCAATTTCGATTTTTGGAGCGGCTTCTGGTGGTGCATGGACACTGGTGTTACAAGAGAATTGCACAGATGATATGCTATTTCTTCTACAAGAATATAGCATTTGGCCTCACCATATTCTATTTTGAGGCCTTTACAGGCTTCTCTGGCCAATCTGTATATGATGACTGGTACATGATATTGTTCAATGTTTGTCTGACATCATTACCTGTCATTTCACTTGGCGTTTTTGAACAAGATGTTCCGTCGGACGTTTGTCTACAGTTTCCTGCATTGTACCAACAAGGACCCAAAAATTTGTTCTTTGATTGGTATAGAATATTGGGATGGATGGCCAATGGTTTATATGCCTCCATCGTCATCTTCCTCCTCACCGTCACCATATTATATGATCATCCATTCCGTGAAGATGGCCAGACAGCTGACATGGCTGCTGTTGGAACCACAATGTTCACTTGCATCATCTGGGCTGTCAACGTCCAAATTGCGCTGACAATGAGCCATTTTACCTGGATTCAACATCTGTTTATATGGGGTAGCATAATGAGTTGGTATGTCTTTCTCACGATATATGGCACACTTTCTCCCGAGTATTCTAAGAGTGCCTACCATTTACTGGTTGAAGCTCTTGGACCTGCACCTATTTATTGGTCAACAACACTTTTAGTTACGGTTACATGCAATCTTCCTTATCTTATCCACATATCATTACAAAGATGTTTTAATCCCATGGATCACCACATTATCCAAGAAATCAAGCACTACAAGAAAGATATTGAGGATCAACACATGTGGATAAGGGAGAGTTCTAAAGCTAGACAAGAAACCAAGATTGGATTCACTGCAAGAGTGGAAGCAAAGATCAGACAATTGAAGGGCAAGCTGCAGAGAAAACATTCTTTCTTGTCTATTATGTCCCCAGTACATAAGTAA 3675 0.4109 MAHGRIRARLRRSHFYTFGCLRPCTTDEGPHPLQGPGFSRTVHCNQPQIHEKRPFYYCKNDISTTKYNVLTFFPKALFEQFRRVANIYFLLAACISASPISPFSPLSMIAPLAFVVGLSMAKEALEDSRRFLQDVKVNHRKVNHHKGDGVFGHRLWQNIMVGDVVKVEKDKFFPADLLLLSSSYEDGICYVETMNLDGETNLKVKRSLESTLALDSDEAFKDFIGTIRCEDPNPNLYTFVGNLEHERQVYPLDPSQILLRDSKLRNTEYIYGVVIFTGHDSKVMQNSTRSPSKRSTIEEKMDYIIYTLFTVLIFISIISSIGFIVKIKFQTPTWWYLRPDNIESQYDPQKVGVAGLSHLVTALILYGYLIPISLYVSIEVVKVLQATFINQDIHMYDEETGTPADARTSNLNEELGQVDTILSDKTGTLTCNQMDFLKCSIAGTPYGVCSSEVEVAAAKQIASDLEDDDSDLSNFPMPNKKGHHVSWENVGVAEEYELETVVTSKGDEDEKHAIKGFGFEDDRLMNANWLQEPNTDDILLFFRILAVCHTAIPELNEETGSFTYEAESPDEGAFLVAAREFGFEFCRRTQSSIFTRERISASGQVVEREYKLLNLLDFTSKRKRMSVIVRDEEGQLFLLCKGADSIIFDRLSKNGKVYLEATTMHLNDYGEAGLRTLALAYRRLEEKEYSDWNDEFQKAKAAVGADRDAMLERVSEIMEKELILVGATAIEDKLQKGVPGCIDKLAQAGLKIWVLTGDKMETAINIGFSCSLLRQGMKQICITTNSDSNDVKQAIKDSILNQITNATQMIKLEKDPHAAFALIIDGKTLTYTLEDDLKHQFLALAVDCASVICCRVSPKQKALVTRLVKEGSGKTTLAIGDGANDVGMIQEADIGVGISGVEGMQAVMASDFSIAQFRFLERLLVVHGHWCYKRIAQMICYFFYKNIAFGLTIFYFEAFTGFSGQSVYDDWYMILFNVCLTSLPVISLGVFEQDVPSDVCLQFPALYQQGPKNLFFDWYRILGWMANGLYASIVIFLLTVTILYDHPFREDGQTADMAAVGTTMFTCIIWAVNVQIALTMSHFTWIQHLFIWGSIMSWYVFLTIYGTLSPEYSKSAYHLLVEALGPAPIYWSTTLLVTVTCNLPYLIHISLQRCFNPMDHHIIQEIKHYKKDIEDQHMWIRESSKARQETKIGFTARVEAKIRQLKGKLQRKHSFLSIMSPVHK 1224
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tsu08g00524 1224 ProSitePatterns E1-E2 ATPases phosphorylation site. 424 430 IPR018303 -
Tsu08g00524 1224 Gene3D - 113 288 - -
Tsu08g00524 1224 Gene3D - 419 431 IPR023214 -
Tsu08g00524 1224 Pfam Phospholipid-translocating ATPase N-terminal 42 109 IPR032631 -
Tsu08g00524 1224 PRINTS P-type cation-transporting ATPase superfamily signature 422 436 - -
Tsu08g00524 1224 PRINTS P-type cation-transporting ATPase superfamily signature 879 898 - -
Tsu08g00524 1224 SFLD Haloacid Dehalogenase 405 930 - -
Tsu08g00524 1224 PANTHER PHOSPHOLIPID-TRANSPORTING ATPASE 1 1220 - -
Tsu08g00524 1224 SUPERFAMILY HAD-like 417 934 IPR036412 -
Tsu08g00524 1224 PANTHER PROBABLE PHOSPHOLIPID-TRANSPORTING ATPASE 1 1220 - -
Tsu08g00524 1224 Pfam Cation transport ATPase (P-type) 547 652 - -
Tsu08g00524 1224 Pfam Phospholipid-translocating P-type ATPase C-terminal 907 1157 IPR032630 -
Tsu08g00524 1224 Gene3D - 432 455 IPR023299 GO:0000166
Tsu08g00524 1224 SUPERFAMILY Calcium ATPase, transduction domain A 147 286 IPR008250 -
Tsu08g00524 1224 SUPERFAMILY Calcium ATPase, transmembrane domain M 51 1149 IPR023298 -
Tsu08g00524 1224 SUPERFAMILY Metal cation-transporting ATPase, ATP-binding domain N 519 688 IPR023299 GO:0000166
Tsu08g00524 1224 Gene3D - 590 700 IPR023299 GO:0000166
Tsu08g00524 1224 CDD P-type_ATPase_APLT_Dnf-like 60 1039 - -
Tsu08g00524 1224 SFLD p-type atpase 405 930 IPR044492 -
Tsu08g00524 1224 TIGRFAM ATPase-Plipid: phospholipid-translocating P-type ATPase, flippase 57 1165 IPR006539 GO:0000287|GO:0005524|GO:0015914|GO:0016021|GO:0140326
Tsu08g00524 1224 Gene3D - 721 919 IPR023214 -
Tsu08g00524 1224 TIGRFAM ATPase_P-type: HAD ATPase, P-type, family IC 849 960 IPR001757 GO:0005215|GO:0005524|GO:0016021|GO:0016887
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tsu08g00524 Tsu-Chr8 5483148 5489497 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tsu08g00524 1 1220 Primary Pumps ATPases AT1G54280 74.491 0.0 1905
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tsu08g00524 K01530 - gmx:100819559 2144.78
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Tsu02g05349 02 62061093 62067378 Tsu08g00524 08 5483148 5489497 PCT