Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tsu08g00518 ATGTCTATTCCTAACAAGAAGTACGATGTGTTTATTAGCTTTAGAGGCGATGACACTAGAGTTGGTTTCACCAGCCATCTTTACGATGCTCTGATTCATAAATCAATCAATACATACATAGATGACCTTCTCAATAGAGGAGTATATATTTGGCCAGAACTTTCCGCAGCAATAGAAAACGCACACATCTCCATTGTTGTTTTCTCTGAAAACTTTGCAAATTCAAAATGGTGTCTGAAAGAACTGGTCAAAGTGCTGGAATGCAGAAAAAATTATGGTCAAATTGTTATACCTGTTTTCTATAAAACAGATCCGTCACATATAAGGAAACAGACTCACAGTTATGAGAAAGCATTCGCAAAACATGAGCGACAATCCGAAAATCTTACGGTACTGCTTAAGTGGAAAGCTGCCCTTACTGAAGCAGCCAATATATCTGGATGGGACACTCAATCTCACAAGGATGAATCTAACCTGATCCACAAAATTGTGAATGATGTAATGCAAAAGCTACAACTGAGGTACAATATTGAACTAGAAGGCGTCGTGAGAAACGAAAAAAACTGTCAACTAGTAGAATCATTAATGGAAAGCAATCAAATACTTGGACTTTGGGGTATGGGCGGAATGGGAAAGACAACCATTGCCAAAATCTTGTTTGCCAAACACTTTTCTCAATATGACTATGTTTGCTTTGCTAATGCAAAAGAATATTCAGTTAGTAGGCTTCTCTCCGAGCTACTAAAAGAAGAAATTTCCCCATCTGATGTTGTAACATCTACATTTCATATGAGGAGGCTAAGAAGTAGTAAAGTTTTTATCGTACTTGATAATGTGGACAGTTTAGATCAGTTTGAATATTTGTGCAGAGATTATCGGGAGCTAACTAAGGATAGTAGACTCATTATAACAACAAGAGATAGACAATTGCTGAGTAAAAGAGTTGATTGGATATATGAGGTCAAGCAATGGGATGATCGAACATCTGTTGAACTTTTTGCCCAAGAAGCTTTTGTGCAAAGTCATCCCCGACAAAATTACAAGCATCTCTTGGAAAGGGCAATAACTTATGCAGGAGGAGTTCCTCTGGCCCTTAAAGTTTTTGCTTTACTTCTTCGTGCAAGAGATGTTGAATTTTGGGAAAGTACTTTTAAGAAACTGGACAAGCATTCTAATGCGGTAATGAACAAAGTTTTAAAATTGAGCTATGATGACTTAGATGCACTACAGAAGAAGATATTTCTAGACATAGCATTCTTTTTCATAGGAGAAAACAAATCTTTTGTCGCGAGGATACTAGACGCTTGTGATTTCGAAGCAAGTAGTGAAATGGAAGTCCTCATGGACAAGGCTTTGATAACTATCTCAAATAACTTCACTATAGAAATGCATGACTTGCTGCAAAAAATGTCTTTGGACATAATATGCAATGATTGTGGCACGGACCCTGCAACACATACCCGACTGAGCGGAAGAGCAGCTCTTGAAGTAATTGAAGAAAACAAGGGGAGTAGCTCTATTGAAGGCATAACGTTGGATTTGTCTCAAAATAATGATTTCACTTTAAGTGCTGACACCTTCACCAAGATGAAAGGCTTAAGAATTCTTAAATTCTATGCATCCTCTAACCAGAGTTGTACTAATACATACCTCAACCTTCCCGAATTTCTTGAGCCATTTTCAAATAAACTAAGGTATTTTGAGTGGAATGGATACCCTTTTGAGTCTCTTCCAGAACCTTTTTTTGCTAAGTTTCTTGCTCAGATCCGCATGCCGCACAGCAATGTTAAACAACTATGGCAGGGGATACAGGAACTAGGTAAGTTAGAGTTAATTGACCTGAGTGAATGCAAGCAATTTGAAAGGCTTCCAGATTTGTCTAAGGCTTCAAGTCTTAGATGGGTTAATCTCTCTGGTTGTGAGAGTATGGTTGATCTTCATCCATCTGTTTTATGCGCAGATacacttaatattttaatactGGATAGGTGTACAAAGGTCAGGATCGTTAGAGGTGAAAAACAGTTATATGGTTTGGAGACGATCAGTGTGGATGGGTGCACAAGTCTGGAGGAATTTGCAGTGTCCTCAAATCTAATTGAAAACTTGGATTTAAGCAGTACAGGAATCCAAACACTGGACCTATCAATTGGACATCTTCTCAAACTTAAACGACTTAATCTAGAGAGTTTAAAAATCATCCGTCTTCCAAAGGAGTTATCCAGTGTGAGATCTATTAGGGAGTTGAAGATTTCTGGCAGTAAATTAATAGTTGAGAAACAACAGCTACAAAAGTTGTTTGATGGCTTACGATCCCTACAAATACTACATATGAAGGATTTTGTAAACCAGTTTGAACTCCCGAGCAACATCGACGATGTATCAATGTTAATGGAATTAAACCTTGATGGAAGCAACATGAAGTGGTTGCCTGTAACAATTAGAAATCTTGAAGAACTTAAAATTCTGTCTTTGGTGAATTGCACAGAGCTTGAGTGGATACCAGAACTTCCACCTCTCATCACAATACTAAATGCAGTTAACTGCACGTCACTGGTTTCAGTGTCAAGTCTAACAAATTTAGCAACACAGATGATGGGTAAAAACAAACACATTTCATTCAGTAACAGCTTGAAGTTGGATGGACATTCCCTAAAACTCTTAATGGAAAGTCTAAATCTAATAATGATGAGTGCTGTGTTTCAAAATGTGCCTGTAAGAAAATACCGTACGGACATTCACAGCTACAACTATACCAGTGTTGATGCTTGTCAACCAGGAACAAGTATCCCGAGTCTGTTCCAATGTCGTACATCTACTGACTCCTCCATTACCATTACATTGCTTCCTGAACGTTCCAACCCGATGGGATTCATATACTCGGTGGTTCTTTCTCAAGCAGGTGGAAATGGAATGAAGAAGGGGGAATCTTGGATAAAGTGTCAATGCAACTTGGGAGAAGAAGGCATAAAGGCTTCCGAGCTAAATACTTATGTGACCGAACTGAACTCAGATCATGTTTATGTGTGGTATGATCCATACCACTGTGACAGCATTCTCAAATTTTATAAGCCTAAGATTTGTTTTGAGTTCTGTGTTACAAATGATAAGGGGGAAGTTGATGGTTCAATTGGTATTAAAGAGTGTGGGGTACAACTCGTAAGTGCTGAAGAATTGGAGAGTGTTTTACCGGAATTGGAATTGGACtccaaaaagaaaagagagttGAAGATGGCAGTGATATTTGAATCAGGCACTATAAAAGAATCAGTTGAAGAAGATAATGAGAGTGAAAGCCACATCTTTAATGTGAACGAGAGCATAATAAGATCTTCTAACAAGGAAACCAATACCAATGCAGGAACTACTCATGAGGAGAATGTTACAAACTCTGCAAAAgttTTCAAAAGCACAGGAAATGAAGAAAGACCAACTCAATCTGAAGCTAGATTGCATCTACCGGTAATGCCAGCTGTTGAAGAAAATGCTTCTGGTAACAGATCAAGTGAAAACAACTATGATTGGCAAGTCAATTTTGATGAGACAAAAAATTcagaagaaaaatcaaatatacaagGAGGACAAATCATTGTTCCGGACACCAATGATCTGATAAGTGAAccagaacaagaaaaagaaaatgcacCAAAAATGAATCTTAGCAAACCTGAAGGTGGATCAGATGTGGACCCTTTTGCTGAAATTCAGAGCATCCTTTTTGAAAGTCCAGAGTCCTCATCAAAAGTAACCAATGCTGCTGTAAAAGAAGCTTTGCATAACCTTGAATGCTTATTGGAAAATTCACTCGAGTCCATACTCAGTGATGTCGAGCTACAACGGCAATTACATACGTCTTTGGAATGCATAAAACAAGCATCACATGAAAAAGTTTCTCCTAATGTTGTGAAGCTTGTCCAGAAAATGACATCCACCATTGATAACATTTTCAAAGACTTTGTCATGACTGAAAAAGTGGTTGCAGATCACATTAATATTTtgcaacaaaaagaaaatctagTGCTGCTAATGGGAGATGCTAAGAAACAGAAGGAATCAAAACAGACAGAAAAGAGTCAGTTTGAGGATGAAGTCAAGCATCTCAAGGAAGAAGGTAAAAAGTTGGATGAGAAAATTAGAAATCTTGTAGAGCAAAAGGAAAGTAATGAGTTGaaagaaatcaatttgaagGAGAGTATGGAAAGATGTGaaggtgaaaagaagaaagtggAAGAGAAGGCTAAGAATATTATAACTGAAATCAAAGAGCTTATGTCGAGTATTAAGAATTCTAAATCTTCATATGCTGCTTCCCTATCAAAGCAGCAGAAGTTGAAAGACAAATGGGAAGGTTTCGGAATTGCTTTTGCAGAGAGGGAAACTGTTGCGGTAATAAACTGGCCAAGATCGATTTATCTGTTTCTAGCTTCACTTGGAGGAATAGCTTTCCTAGCTCTGTTTGGAATTGGAATGATTTCAATTACGATAGATTAA 4491 0.3672 MSIPNKKYDVFISFRGDDTRVGFTSHLYDALIHKSINTYIDDLLNRGVYIWPELSAAIENAHISIVVFSENFANSKWCLKELVKVLECRKNYGQIVIPVFYKTDPSHIRKQTHSYEKAFAKHERQSENLTVLLKWKAALTEAANISGWDTQSHKDESNLIHKIVNDVMQKLQLRYNIELEGVVRNEKNCQLVESLMESNQILGLWGMGGMGKTTIAKILFAKHFSQYDYVCFANAKEYSVSRLLSELLKEEISPSDVVTSTFHMRRLRSSKVFIVLDNVDSLDQFEYLCRDYRELTKDSRLIITTRDRQLLSKRVDWIYEVKQWDDRTSVELFAQEAFVQSHPRQNYKHLLERAITYAGGVPLALKVFALLLRARDVEFWESTFKKLDKHSNAVMNKVLKLSYDDLDALQKKIFLDIAFFFIGENKSFVARILDACDFEASSEMEVLMDKALITISNNFTIEMHDLLQKMSLDIICNDCGTDPATHTRLSGRAALEVIEENKGSSSIEGITLDLSQNNDFTLSADTFTKMKGLRILKFYASSNQSCTNTYLNLPEFLEPFSNKLRYFEWNGYPFESLPEPFFAKFLAQIRMPHSNVKQLWQGIQELGKLELIDLSECKQFERLPDLSKASSLRWVNLSGCESMVDLHPSVLCADTLNILILDRCTKVRIVRGEKQLYGLETISVDGCTSLEEFAVSSNLIENLDLSSTGIQTLDLSIGHLLKLKRLNLESLKIIRLPKELSSVRSIRELKISGSKLIVEKQQLQKLFDGLRSLQILHMKDFVNQFELPSNIDDVSMLMELNLDGSNMKWLPVTIRNLEELKILSLVNCTELEWIPELPPLITILNAVNCTSLVSVSSLTNLATQMMGKNKHISFSNSLKLDGHSLKLLMESLNLIMMSAVFQNVPVRKYRTDIHSYNYTSVDACQPGTSIPSLFQCRTSTDSSITITLLPERSNPMGFIYSVVLSQAGGNGMKKGESWIKCQCNLGEEGIKASELNTYVTELNSDHVYVWYDPYHCDSILKFYKPKICFEFCVTNDKGEVDGSIGIKECGVQLVSAEELESVLPELELDSKKKRELKMAVIFESGTIKESVEEDNESESHIFNVNESIIRSSNKETNTNAGTTHEENVTNSAKVFKSTGNEERPTQSEARLHLPVMPAVEENASGNRSSENNYDWQVNFDETKNSEEKSNIQGGQIIVPDTNDLISEPEQEKENAPKMNLSKPEGGSDVDPFAEIQSILFESPESSSKVTNAAVKEALHNLECLLENSLESILSDVELQRQLHTSLECIKQASHEKVSPNVVKLVQKMTSTIDNIFKDFVMTEKVVADHINILQQKENLVLLMGDAKKQKESKQTEKSQFEDEVKHLKEEGKKLDEKIRNLVEQKESNELKEINLKESMERCEGEKKKVEEKAKNIITEIKELMSSIKNSKSSYAASLSKQQKLKDKWEGFGIAFAERETVAVINWPRSIYLFLASLGGIAFLALFGIGMISITID 1496
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tsu08g00518 1496 ProSiteProfiles TIR domain profile. 6 171 IPR000157 GO:0007165
Tsu08g00518 1496 MobiDBLite consensus disorder prediction 1113 1148 - -
Tsu08g00518 1496 SUPERFAMILY "Winged helix" DNA-binding domain 397 477 IPR036390 -
Tsu08g00518 1496 SUPERFAMILY L domain-like 512 876 - -
Tsu08g00518 1496 Coils Coil 1343 1384 - -
Tsu08g00518 1496 Gene3D - 174 317 IPR027417 -
Tsu08g00518 1496 Pfam TIR domain 7 174 IPR000157 GO:0007165
Tsu08g00518 1496 Gene3D - 3 173 IPR035897 -
Tsu08g00518 1496 MobiDBLite consensus disorder prediction 1113 1142 - -
Tsu08g00518 1496 Gene3D - 325 407 IPR042197 -
Tsu08g00518 1496 SMART till_3 7 145 IPR000157 GO:0007165
Tsu08g00518 1496 Coils Coil 1392 1426 - -
Tsu08g00518 1496 Gene3D Ribonuclease Inhibitor 699 893 IPR032675 -
Tsu08g00518 1496 Gene3D Ribonuclease Inhibitor 507 698 IPR032675 -
Tsu08g00518 1496 PANTHER LEUCINE-RICH REPEAT-CONTAINING PROTEIN 6 938 IPR044974 GO:0006952
Tsu08g00518 1496 PANTHER NB-ARC DOMAIN PROTEIN 6 938 - -
Tsu08g00518 1496 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 175 417 IPR027417 -
Tsu08g00518 1496 Pfam NB-ARC domain 190 407 IPR002182 GO:0043531
Tsu08g00518 1496 PRINTS Disease resistance protein signature 201 216 - -
Tsu08g00518 1496 PRINTS Disease resistance protein signature 266 280 - -
Tsu08g00518 1496 PRINTS Disease resistance protein signature 358 372 - -
Tsu08g00518 1496 PRINTS Disease resistance protein signature 604 620 - -
Tsu08g00518 1496 SUPERFAMILY Toll/Interleukin receptor TIR domain 3 148 IPR035897 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tsu08g00518 Tsu-Chr8 5371047 5380920 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tsu08g00518 5 800 WRKY Transcription Factor Family AT4G12020 28.848 4.31e-74 271