Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tsu08g00515 ATGTCTTGTTCTACCTCTCAGAAAAAGTACGATGTATTCATCTGTTTCAGAGGCGAAGACACGCGCGAAACATTCACAAGTCATCTTCATTATGTTCTCTGCAAACAAAACATCATAACATACATTGACGATAATCTTATCAAAGGAGATGAAATTGGTTCAGCTCTTTCCCAAGCAATTCAAGACTCACGAATATCTCTCATCATTTTCTCCAAAAACTATGCAACCTCAAAGTGGTGTTTGAATGAACTCCTCAAGATACTCGAATGCAGAAAATTTCATGGTCAAGTGGTTATACCTGTGTTCTATAACATAGATCCATCAGATCTGCGTAAGCAGACAGGGAGTTATGGAGAAGCTTTTGCAAAATATGATAGAGAAGTTATGAATAACAATGAATCTTTTGCAAACACTGTTTCTCAGTGGAGAATTTCTCTTGCTGAGGTTGCTAATATACCTGGATGGGATTCTCAAAGTCGTACCCATAAGGATGATTCTCAAGTCATTCAGAGCATTGTGAACGATGTTTGGCAAAAGCTAGCCTTGATGTATCCTAATCAACTGAAAGGCCTTGTTCATAATGATGAACAGAGTGAATATGCTGAGTCACTACTGAAAAGTTATCCAAGAATTGGAATTTGGGGCATGGGTGGAATAGGGAAGACAACCATAGCCAGACAGATGTTTGCCAAGCACTTTTCACAATACGACGGTGCTTGTTTTTTGGAAAATGTAAgcaaagaagtagaaaagtttGGAAAAACGTACATCCGTAATAAACTTTTCAGTACGCTACTAAAGAAAGAAATTACTGAATCTGATATTCTTGGAGCCGCGTTCATTAAGAGAATGCTCAGTCATATGAAAGTTTTCGTTGTACTTGATGACGTGGGTAATGCTGCACAATTAGAATATTTGTGTGAAGAACTTGATGACCTCGGACCAAACAGTAGACTCATTATCACGGCAAGAGATAGGCACACTCTTAGGGGAAGAGTTGATGTGATATACGAGGTCACAAAATGGAAGTTTGAAGAATCTTTGAGGCTTTTTAGCATAGGAGCTTTCAAGCAAAACCACCCTAAAGACAGTTACAACCTTCTATCGCAAAGGGCGGTTGCATATGCAGGAGGCGTTCCATTAGCTTTAAAAGTTTTGGGTTCACATTTTTATTCTAGAAGTCCTGAATTCTGGGAACCTGAATTGAAATATTTGGAGAACAAGGGGGAATCCTTACGTGGAATTCAAGAAGTGTTAAAAGTGAGCTATAACGGATTAACAGTCCGAGAAAAGGAAATGTTTCTTGATATTGCATTCTTTTTCAAAGATGAAAATAGTGATTTAGTGACAGTATACTAG 1359 0.3767 MSCSTSQKKYDVFICFRGEDTRETFTSHLHYVLCKQNIITYIDDNLIKGDEIGSALSQAIQDSRISLIIFSKNYATSKWCLNELLKILECRKFHGQVVIPVFYNIDPSDLRKQTGSYGEAFAKYDREVMNNNESFANTVSQWRISLAEVANIPGWDSQSRTHKDDSQVIQSIVNDVWQKLALMYPNQLKGLVHNDEQSEYAESLLKSYPRIGIWGMGGIGKTTIARQMFAKHFSQYDGACFLENVSKEVEKFGKTYIRNKLFSTLLKKEITESDILGAAFIKRMLSHMKVFVVLDDVGNAAQLEYLCEELDDLGPNSRLIITARDRHTLRGRVDVIYEVTKWKFEESLRLFSIGAFKQNHPKDSYNLLSQRAVAYAGGVPLALKVLGSHFYSRSPEFWEPELKYLENKGESLRGIQEVLKVSYNGLTVREKEMFLDIAFFFKDENSDLVTVY 452
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tsu08g00515 452 ProSiteProfiles TIR domain profile. 8 180 IPR000157 GO:0007165
Tsu08g00515 452 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 184 437 IPR027417 -
Tsu08g00515 452 Pfam TIR domain 9 187 IPR000157 GO:0007165
Tsu08g00515 452 Gene3D - 3 180 IPR035897 -
Tsu08g00515 452 Gene3D - 181 335 IPR027417 -
Tsu08g00515 452 PRINTS Disease resistance protein signature 210 225 - -
Tsu08g00515 452 PRINTS Disease resistance protein signature 376 390 - -
Tsu08g00515 452 PRINTS Disease resistance protein signature 284 298 - -
Tsu08g00515 452 PANTHER LEUCINE-RICH REPEAT-CONTAINING PROTEIN 8 450 IPR044974 GO:0006952
Tsu08g00515 452 Gene3D - 343 427 IPR042197 -
Tsu08g00515 452 Pfam NB-ARC domain 211 410 IPR002182 GO:0043531
Tsu08g00515 452 PANTHER NB-ARC DOMAIN PROTEIN 8 450 - -
Tsu08g00515 452 SUPERFAMILY Toll/Interleukin receptor TIR domain 3 155 IPR035897 -
Tsu08g00515 452 SMART till_3 9 152 IPR000157 GO:0007165
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tsu08g00515 Tsu-Chr8 5343178 5345658 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tsu08g00515 5 451 WRKY Transcription Factor Family AT4G12020 30.702 1.47e-42 159
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tsu08g00515 - - mtr:MTR_8g017800 751.51