Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tsu08g00508 ATGGGTGGTTCAGGAAGCTGGTTTAAATCACTTATTCCACCCAAAAAGCCCTCCACCAATAATCAAGTGAAGGGTATTGATAAGAGTAAGAGAAAATGGAAGTTATGGTGGAATTCTTCAGAAAGCATTGGATTTGGAAACTCTATGAAGAAGGGTCATGGTTTTGTTGCTTATGATAAATATTCATGTTCTTCATTTGTGGTGAATGAACAAGCTTTTGCTGCTGCAATGGCTGCTGTAGTAAGAACTCCACACAAAGATTTCTTGCTGATTAAGCAGGAATGGTCTGCCATCCGCATCCAGTCTGCTTTTCGAGGCTTCTTGGCAAGAAGAGCTTTGAGAGCTCTGAGGGCATTGGTGAGGCTGCAAGCTATATTTCGCGGCCGGTTGGTGAGGAAACAAGCTGCTGTTACTCTACGGTGCATGCAAGCTCTAGTGCGAGTTCAAGAACGCGTCAAGGCAAAGAATGTTAGGAATTCTCCAGAAAGGAAAGCTAAGCAGAAGCAATTAAATGTGCAGCACAATCAAGATGATTCTGTTAAACAAGCTGAGAAAGGATGGTGTGACATACCAGGAACTGTGGAAGAGGTTAAAGCAAAACTTAAATTGAGGCAAGAAGGAGCAATTAGGAGAGATAGAACAATGTCATACTCCATTTCTACTCAGACATCAACGGTGAGTTCTAGTCCAACCTCAAGAGCTTCTAAGTCATCGACTTCTCTCAAGAACCGCAGCTTAGACGGTAAGATCTTGTTAGAACGCTGGATTGCGGCTAAGCCATGGGAGAGCAGGTTGATGGGAGACATTTACTTGGACTCACCTAACATGACTCCATTGTCCAAGAAGAGTGAGAATGTTGAACTTTCCTTTAACTCATATGGCTTAAAATCTAGAAGGAATGGTGCAACAATTAGAAGTTCATCTAAATCTCTTACAACAAGCCAATCAACTCCGTCGTCTTCAGCTGTAAGCTCTGAATGTATGTATGATGATAGCCCTTTATCAACTTCATGCACATCAGAATCACCAGCGAAGGTGGAAGATACAAAGGAAAGGAATATTGGGAAACCGAGCTACACAAGTTTGATGGCGTCAACCAAAGGTAAACTGAAAGTGAGTAGATCACATTCGTCTCCGAATTTGAAGAAACTCTTTATGGATGATGATTATCTATCTCATAGCACGAGAAAAAACATTCTAAGCGCAGATACTAGAAGCATCTCTGGTTCATATTCTTCGGCTAATATATGGAAGGATCTTTATGCAACGCCTTTAAGGACAAGTTATCAAAAGCGATTTACATTGGGAGATAAGTAG 1317 0.4146 MGGSGSWFKSLIPPKKPSTNNQVKGIDKSKRKWKLWWNSSESIGFGNSMKKGHGFVAYDKYSCSSFVVNEQAFAAAMAAVVRTPHKDFLLIKQEWSAIRIQSAFRGFLARRALRALRALVRLQAIFRGRLVRKQAAVTLRCMQALVRVQERVKAKNVRNSPERKAKQKQLNVQHNQDDSVKQAEKGWCDIPGTVEEVKAKLKLRQEGAIRRDRTMSYSISTQTSTVSSSPTSRASKSSTSLKNRSLDGKILLERWIAAKPWESRLMGDIYLDSPNMTPLSKKSENVELSFNSYGLKSRRNGATIRSSSKSLTTSQSTPSSSAVSSECMYDDSPLSTSCTSESPAKVEDTKERNIGKPSYTSLMASTKGKLKVSRSHSSPNLKKLFMDDDYLSHSTRKNILSADTRSISGSYSSANIWKDLYATPLRTSYQKRFTLGDK 438
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tsu08g00508 438 MobiDBLite consensus disorder prediction 214 243 - -
Tsu08g00508 438 SMART iq_5 115 136 IPR000048 GO:0005515
Tsu08g00508 438 SMART iq_5 92 114 IPR000048 GO:0005515
Tsu08g00508 438 ProSiteProfiles IQ motif profile. 93 121 IPR000048 GO:0005515
Tsu08g00508 438 Pfam IQ calmodulin-binding motif 95 114 IPR000048 GO:0005515
Tsu08g00508 438 Pfam IQ calmodulin-binding motif 117 134 IPR000048 GO:0005515
Tsu08g00508 438 PANTHER IQ CALMODULIN-BINDING MOTIF PROTEIN 1 436 - -
Tsu08g00508 438 MobiDBLite consensus disorder prediction 155 171 - -
Tsu08g00508 438 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 80 135 IPR027417 -
Tsu08g00508 438 PANTHER IQ-DOMAIN 5-RELATED 1 436 - -
Tsu08g00508 438 MobiDBLite consensus disorder prediction 1 24 - -
Tsu08g00508 438 MobiDBLite consensus disorder prediction 301 328 - -
Tsu08g00508 438 MobiDBLite consensus disorder prediction 155 184 - -
Tsu08g00508 438 Gene3D - 91 144 - -
Tsu08g00508 438 ProSiteProfiles IQ motif profile. 117 144 IPR000048 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tsu08g00508 Tsu-Chr8 5283492 5286313 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tsu08g00508 1 421 IQD Protein Family AT1G72670 43.418 7.34e-81 254
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tsu08g00508 - - gmx:100784093 442.965
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Tsu02g05352 02 62110859 62113634 Tsu08g00508 08 5283492 5286313 PCT