Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tsu08g00507 atggtACATCACTCTTGTTGTAacaaacaaaaggtgaaaaggGGATTATGGTCacctgaagaagatgaaaaactcATCAAATATATTACAACTTATGGACATGGTTGTTGGAGCTCAGTTCCAAAACTTGCTGGTCTTCAAAGATGTGGAAAGAGTTGCAGATTAAGATGGATAAATTATCTAAGACCTGATTTGAAACGTGGAAGTTTTTCTCATCAAGAAGCTGCACTCATTATAGAACTCCATAGCATTCTAGGGAATAGGTGGGCTCAGATTGCCAAGCACTTGCCAGGAAGAACGGACAATGAGGTGAAAAACTTTTGGAATTCAAGTATAAAGAAAAAACTCTTTTCTCATGATTTTATTCCATCTTTCACAACATGTTCTAATATTCACACCCCCTACAATATTGGTTCTATGGATAGTTTCTTCCCTAATCCTAATTTGATCCTAAACATCAATCATCACCTTCAAGATCAACTATACCTTCCAACCTCATCACCAAATCAACAAGGCTTTCACCAAATTGATACAAAGGTAGacatcaataatcaatataaATCCAATTCCATTCACATTCAAAATCCAATTCAAGAAATATTACAACCAATAAtatcaaacccttcaccttatGAAGATACATGGTCATTGGATTGTGTAGCACTTCATCTCAATTCAAatcaagaaaatcaaatttCCAAAAGTGATACCACCCCACTTAATAGTACTAGTGTTGACAAATTAATCAACCCAATTGAATTAATGCAACAATATGATCAATGTCATGATCATCACTACTTGGTTGAACTTGATCAACCAATTATGCCTAAATTAGTCAATGATCAAAGCCTTGAGGATTATGTTTGTAGCATCCTAGATTCATCTAATTCCCAAGAACATGAGGCTTCAACAAAAATTTACACATCTAGTATTGTTTATCCACAAGATCAAATTTTGGAAGCTAATCAATTGGATTATAATATTGATGCACTCATGTCATCATTGCCATCCACAAGCAGCCAAATTGTCACAAATATAATGCCTTTAGGATGGGAGCCTTAA 1062 0.3173 MVHHSCCNKQKVKRGLWSPEEDEKLIKYITTYGHGCWSSVPKLAGLQRCGKSCRLRWINYLRPDLKRGSFSHQEAALIIELHSILGNRWAQIAKHLPGRTDNEVKNFWNSSIKKKLFSHDFIPSFTTCSNIHTPYNIGSMDSFFPNPNLILNINHHLQDQLYLPTSSPNQQGFHQIDTKVDINNQYKSNSIHIQNPIQEILQPIISNPSPYEDTWSLDCVALHLNSNQENQISKSDTTPLNSTSVDKLINPIELMQQYDQCHDHHYLVELDQPIMPKLVNDQSLEDYVCSILDSSNSQEHEASTKIYTSSIVYPQDQILEANQLDYNIDALMSSLPSTSSQIVTNIMPLGWEP 353
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tsu08g00507 353 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 66 116 IPR017930 -
Tsu08g00507 353 CDD SANT 17 61 IPR001005 -
Tsu08g00507 353 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 9 65 IPR017930 -
Tsu08g00507 353 SMART sant 13 63 IPR001005 -
Tsu08g00507 353 SMART sant 66 114 IPR001005 -
Tsu08g00507 353 Gene3D - 69 116 - -
Tsu08g00507 353 ProSiteProfiles Myb-like domain profile. 9 61 IPR001005 -
Tsu08g00507 353 SUPERFAMILY Homeodomain-like 11 108 IPR009057 -
Tsu08g00507 353 ProSiteProfiles Myb-like domain profile. 62 112 IPR001005 -
Tsu08g00507 353 Pfam Myb-like DNA-binding domain 14 61 IPR001005 -
Tsu08g00507 353 Pfam Myb-like DNA-binding domain 67 109 IPR001005 -
Tsu08g00507 353 PANTHER MYB DOMAIN PROTEIN 55 1 341 - -
Tsu08g00507 353 CDD SANT 69 109 IPR001005 -
Tsu08g00507 353 PANTHER TRANSCRIPTION FACTOR MYB26 1 341 - -
Tsu08g00507 353 Gene3D - 11 67 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tsu08g00507 Tsu-Chr8 5270527 5272130 Dispersed/Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tsu08g00507 1 118 MYB Transcription Factor Family AT3G13890 94.068 7.44e-78 241
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Tsu08g00507 Myb_DNA-binding 6.9e-15 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tsu08g00507 K09422 - gmx:100785147 441.039