Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tsu08g00505 ATGACTTGGGCGGAGAAGTTTGTTCGTAACAACCGGGGTTGTACTGCACCAATTAGTGAAAGGTTTTTCCGGGAAAAGCATCATACCAGGTATCTTAAACTCAGAGCCCTTCAAATTAATCAGGAAAAAGCATTTAAGAATAACTTCAGAGATGTGCCTGAGATTTATGGTGAATTGGACCGTAGAGGGTGGTTGTTGTTTAATAGTTTAATGGATAGGGAAAAAGTGGTTGGAAATTTAGAGCTTGTTAAGGAATTTTTTGCCAATGCTTATCAAGGTGATGCTAATAGAAAGGTGTATGTTAGAGGGGTATTGGTGGACTACTCAGGTGATGCCATCAATAGATTTTTGAGAACTAGAAGAGTAAACCAATGTGCATACATGCCGCTTTACCACAATGTTGCGAGTATGAGTTACAGGGAAAGGAAAGAGGTGAGAAGTTATGTGGGAAGACCCTTGGCGCCGTGGTATAAATACTATGGTAGTTCGACGCCAACAAAGATTCACATTCACCACTTCCGTCCGGTTGGTCGTGCTTGGGCTGATTGGATTATGCATAACGTGGTACCCGTAGCAAATACTGCAGAGATACAAATTTACAATGCATTATTGATTAAGATGATCATGGACCAATCAGACATTGATTTGGGGGAGCTGCTGAGTATGGACATTAGGAGGACATCGCAGATTGAGAAACCATCTTTCCGGCTTGGGCATTGTAATCTTATAACTGCTTTATGCCGAGATCTGCATGTGCCGGAGTTAGATGGGGATGGCGTGTTTTATCCTGTGGCGCCTTTGACTGTTGAGTCTTACCGGTCTTTCTCGACGGATCCAGTACCGGAGGCCGAGAGAGCAAAGTTTGTGGAGGAGGTTGATCCTGAGGCGGATGATGAGGTGGATGAGTATTTTAATGATAATGAGCAGGAAAATGCTGGTGGACAAGAAGATGATGCGCTCATGGCGGAGATAGATGGTTTTGTGGGAGAGCAAGAGATTCCGACACAGCACCACGAGGCACCTCAAGGTGGGTATCACTACACCCATCATGAGGATGTCTTGGCACGCATGTTGCATGAACTCGATTTGTATAAATCCACTGGGGCCACACATATCTACTACAACCAACAAGGGTCGTTGTATCAAGATGCAATGCAGTATAGGGAAGAACATCCCCCACCTTCGGATTACGAGTTGTATCCGACGCGTGGGGAATGGGATGACTATGTCCACAATGACCGGGAAAGGTATGAAGGGGTAATGCGAAGACGTAGTAGAGAATGGGAGCGAAGCTACCTTGCTCATAATCCTCCCACTGGTCTTCAAAGATGTGGAAAGAGTTGCAGATTAAGATGGATAAATTATCTAAGACCTGATTTGAAACGTGAAAATTTCTCTGATGAAGAAGCTGCACTCATTATAGAACTCCACAGCATTCTAGGCAATAGGTGGGCTCAGATTGCCAAACACTTACCAGGCAGAACAGATAATGAAGTGAAAAACTTTTGGAATTCaacaatgaagaagaaaatccTTTCTCATGATATTATTCCATCTTTCAACACATTTTCTAATATTCACACCCCCTTTAATCATTATCACCACCAAGATCACCTATACTTTCCAACTTCATCTCAAAATTTACAAACTAATTTTCACCAAATTGACACAAAGGTAGACCACAATAATCATAACAATGCCAATTTTCTTCATATTCAAAATCCAGTACCAATAGCACAACCAATATTTAATCCTCCTTGTTATGAAGATACATGTTCATTAGATTATTGTGTACCTCTTCATGTCAATTCAaatcaagaaaacaaaatttccaAAAGTGATACCACTTCACTTAATATTGTTGACAAATTAATCAACCCAACTACATTAATGCAACAATATAATTATGATCAATGTCATGATGACTTGTTTGAACTTGAATCTATTGTGCCCAAAGTGAGTGATCAAAGTTTTGAGGATTATTATGCTTGTAGCAACCCAATTGAATTAATGCAACAATATGATAAATGTCACGATAATCATCACTTGGTTGAATTTGATCAACCAATTGTGCCTAAATTATTCAATGAACAAAGCATCGAGGATTATGCTTGTAGCTTCCAAGAATCATCTAATTTTGAAGCTCATGATGAAgctccaaaaaaaattcagtgcTACACATCAAGTACTATTTATTCACAAGATCACACTTTGGAAGCTAATCAATTTGATTACTATTGA 2241 0.3905 MTWAEKFVRNNRGCTAPISERFFREKHHTRYLKLRALQINQEKAFKNNFRDVPEIYGELDRRGWLLFNSLMDREKVVGNLELVKEFFANAYQGDANRKVYVRGVLVDYSGDAINRFLRTRRVNQCAYMPLYHNVASMSYRERKEVRSYVGRPLAPWYKYYGSSTPTKIHIHHFRPVGRAWADWIMHNVVPVANTAEIQIYNALLIKMIMDQSDIDLGELLSMDIRRTSQIEKPSFRLGHCNLITALCRDLHVPELDGDGVFYPVAPLTVESYRSFSTDPVPEAERAKFVEEVDPEADDEVDEYFNDNEQENAGGQEDDALMAEIDGFVGEQEIPTQHHEAPQGGYHYTHHEDVLARMLHELDLYKSTGATHIYYNQQGSLYQDAMQYREEHPPPSDYELYPTRGEWDDYVHNDRERYEGVMRRRSREWERSYLAHNPPTGLQRCGKSCRLRWINYLRPDLKRENFSDEEAALIIELHSILGNRWAQIAKHLPGRTDNEVKNFWNSTMKKKILSHDIIPSFNTFSNIHTPFNHYHHQDHLYFPTSSQNLQTNFHQIDTKVDHNNHNNANFLHIQNPVPIAQPIFNPPCYEDTCSLDYCVPLHVNSNQENKISKSDTTSLNIVDKLINPTTLMQQYNYDQCHDDLFELESIVPKVSDQSFEDYYACSNPIELMQQYDKCHDNHHLVEFDQPIVPKLFNEQSIEDYACSFQESSNFEAHDEAPKKIQCYTSSTIYSQDHTLEANQFDYY 746
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tsu08g00505 746 CDD SANT 464 504 IPR001005 -
Tsu08g00505 746 PANTHER MYB DOMAIN PROTEIN 55 440 685 - -
Tsu08g00505 746 Gene3D - 464 511 - -
Tsu08g00505 746 Pfam Putative plant transposon protein 61 253 IPR046796 -
Tsu08g00505 746 Gene3D - 413 461 - -
Tsu08g00505 746 Pfam Myb-like DNA-binding domain 462 505 IPR001005 -
Tsu08g00505 746 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 457 511 IPR017930 -
Tsu08g00505 746 SMART sant 461 509 IPR001005 -
Tsu08g00505 746 PANTHER TRANSCRIPTION FACTOR MYB26 440 685 - -
Tsu08g00505 746 SUPERFAMILY Homeodomain-like 442 512 IPR009057 -
Tsu08g00505 746 ProSiteProfiles Myb-like domain profile. 457 507 IPR001005 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tsu08g00505 Tsu-Chr8 5233163 5240829 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tsu08g00505 440 513 MYB Transcription Factor Family AT3G13890 89.189 1.02e-39 148
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB-related Tsu08g00505 Myb_DNA-binding 1.2e-12 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tsu08g00505 K09422 - gmx:100785147 268.47