Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tsu08g00498 ATGGTGGTTACATCTATTCGTCTTCTTCCTTCTTCCCTCACTTCATTCGTTCAACATCGTTCTCCTTATTCATGGCGTCGTTGGCATCCTTCTTCCATCTCATTTCCACTCTCTCCCATCCACTCCACTTCTATTTCTTCCAATGGAATTATTAGTGACGTTGAATTACCACCTGTTGATCAATCACAAGTTATATTCATCGGTACTGGAACCAGTGAAGGGATTCCCAGAGTTAGCTGCTTGACTAATCCTTCAAATCAATGTCCGGTTTGTTTAAAAGCAGCTAATCCAAGTGATAAGAATAGGAGACTTAACACAAGCATCCTCGTTCGTCACTCGAACTCCGCAGGAACACACAATATTCTTATAGATGCTGGAAAATTTTTCTATCACAGTGCTCTCCGGTGGTTCCCTGAATTTGGGATAAGAACAATTGATGCAGTTATTATTACTCATTCTCATGCCGATGCAATTGGAGGTCTTGATGATCTTAGAGACTGGACTAACAATGTTCAACCTTCAATTCCAATTTATGTAGCCAAGCGTGACTTTGAGGTGATGAAGAAGACCCATTATTATTTAGTAGATACAAGTGTAGTCCAACCTGGTGCTGCAGTCTCAGCATTGCAATTCAATAGTATATCTGAAGAACCATTTTTTGTACAAGGATTGAAGTTTACACCACTACCAGTGTGGCATGGCAAAGGTTATCGGTCCCTTGGTTTCCGTTTTGGTAATGTATGTTATATAAGTGATGTCAGTGATATTCCGGAAGAAACTTATCCACTTTTGAAGGGCTGTGAACTTCTAATCATGGATGCTTTGAGGCCTGATCGTTCTTCAGCTACGCATTTTGGACTTCCAAGGGCCTTAGAGGAAGTGCGAAAAATTCAACCCAAAAAGACACTTTTTACTGGTATGATGCATCTGATGGATCATGAGCCTCAAACAACCATTATCAACTTCAAGAACAAAATTAAAGTAGGATTCTTTGATTTGCGACGTGCTTTTGTGATCAAAATCATTAATCAGGAAATGCGGTTGCATCGAATTCCAGGAAGAATATTTTTGAATGGTTCATCTCCTTTTGCATCCTTGTTTTGTAAACAAGGTAGCAAAGGCATCAATCAGGATGCAATGCTTCTTTGGGAGAATTTTGGTTACATGGACGACACAGTATTTTGTGGTGTATTTGACGGGCATGGACAATATGGACATGTGGTCGCCAAGAAAGTTAGAGATGCTTTCCCTTTAAAGATAATGAACGAATGGAAATCACGTTGTCGTGAAGatgataataatattaacaacaacaacaacaataaaaataataatcatttcAAGATAATGAGAGAATCCTTTGTGAAAGCATCTAAGTCTATGGATAGAGAACTCAAACAACAACATTCCATGGATTCTTATGGAAGTGGGACAACCGCTGTTACCGTGATCAAGAAGGGGCAAGAACTAGTTATTGCGAATGTTGGAGACTCGAGAGCTGTTTTAGGTACTCGAGATCCGAATGGTTCTCTTATTGCACTTCAACTGACAACTGACCTAAAGCCAAATCTTCCAAGGGAAGCAGAGAGAATAATGATGTGTAAAGGAAGGGTGTTTGCCCTTGAGAACGAAGGAATTGCTCGACTTTGGCTTCCCAATGCTGATTCCCCTGGACTAGCAATGGCACGCGCTTTTGGTGATTTTTGCCTTAAGGACTTTGGACTCATATCTATTCCAGAAGTCTCCTATCGCCACCTCACTGACCATGATCAATTTATTGTCTTAGCCACAGATGGGATTTGGGATGTAATGTCCAACGAACAAGTTGTGAACATTGTCGCATCTGCTCCGCGATCTTCTGCTGCTAAACTACTTGTTGAGGCAGCTGTTCAAGCATGGAGGACAAAGCTTCCATCTTCGAAGCCCGATGATTGCTCTGCAATATGTCTCTTCTTCCATCCAAATGCTACACCTAACACTAATACTAGTGTCGCTACGGGGGCTAGAGAATCACCCTACAAAACTAAACAAAAGCACCAATAG 2043 0.4038 MVVTSIRLLPSSLTSFVQHRSPYSWRRWHPSSISFPLSPIHSTSISSNGIISDVELPPVDQSQVIFIGTGTSEGIPRVSCLTNPSNQCPVCLKAANPSDKNRRLNTSILVRHSNSAGTHNILIDAGKFFYHSALRWFPEFGIRTIDAVIITHSHADAIGGLDDLRDWTNNVQPSIPIYVAKRDFEVMKKTHYYLVDTSVVQPGAAVSALQFNSISEEPFFVQGLKFTPLPVWHGKGYRSLGFRFGNVCYISDVSDIPEETYPLLKGCELLIMDALRPDRSSATHFGLPRALEEVRKIQPKKTLFTGMMHLMDHEPQTTIINFKNKIKVGFFDLRRAFVIKIINQEMRLHRIPGRIFLNGSSPFASLFCKQGSKGINQDAMLLWENFGYMDDTVFCGVFDGHGQYGHVVAKKVRDAFPLKIMNEWKSRCREDDNNINNNNNNKNNNHFKIMRESFVKASKSMDRELKQQHSMDSYGSGTTAVTVIKKGQELVIANVGDSRAVLGTRDPNGSLIALQLTTDLKPNLPREAERIMMCKGRVFALENEGIARLWLPNADSPGLAMARAFGDFCLKDFGLISIPEVSYRHLTDHDQFIVLATDGIWDVMSNEQVVNIVASAPRSSAAKLLVEAAVQAWRTKLPSSKPDDCSAICLFFHPNATPNTNTSVATGARESPYKTKQKHQ 680
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tsu08g00498 680 Pfam Protein phosphatase 2C 389 619 IPR001932 -
Tsu08g00498 680 CDD metallo-hydrolase-like_MBL-fold 63 274 - -
Tsu08g00498 680 MobiDBLite consensus disorder prediction 661 680 - -
Tsu08g00498 680 SMART Lactamase_B_5a 104 307 IPR001279 -
Tsu08g00498 680 Pfam Beta-lactamase superfamily domain 119 305 IPR001279 -
Tsu08g00498 680 SUPERFAMILY PP2C-like 360 653 IPR036457 -
Tsu08g00498 680 Gene3D - 58 334 IPR036866 -
Tsu08g00498 680 ProSiteProfiles PPM-type phosphatase domain profile. 363 652 IPR001932 -
Tsu08g00498 680 CDD PP2Cc 363 652 IPR001932 -
Tsu08g00498 680 Gene3D - 360 654 IPR036457 -
Tsu08g00498 680 SMART PP2C_4 354 650 IPR001932 -
Tsu08g00498 680 PANTHER HYDROLASE C777.06C-RELATED-RELATED 52 315 - -
Tsu08g00498 680 PANTHER OS09G0363800 PROTEIN 52 315 - -
Tsu08g00498 680 SUPERFAMILY Metallo-hydrolase/oxidoreductase 63 327 IPR036866 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tsu08g00498 Tsu-Chr8 5133793 5143466 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tsu08g00498 350 656 PP2C-type Phosphatase Gene Family AT1G79630 50.000 2.90e-119 363
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tsu08g00498 - - mtr:MTR_8g017270 557.37