Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tsu08g00497 ATGTCAAATTTAACTTCTGCATCTGGTGAAGCTAGTGAAATTGGTACTAGTTACTCTCAAGAACAACACTTAGCTCCTCCAACACAAAcagtgaagaaaaaaagaaacctTCCTGGTAACCCAGacCCTGATGCTGAAGTAATAGCTTTATCACCAAAAAGTTTACTAGCAAAAAACAGATTCATATGTGAGATCTGTAACAAAGGTTTTCAAAGAGATCAAAATCTTCAACTTCATAGAAGAGGACATAACTTACCATGGAAGTTGAAACAAAGAACAAGTaaagaaataagaaagaaaGTTTATGTATGTCCAGAAACAACTTGTGTACATCATGATCCATCAAGGGCATTAGGAGATTTAACAGGAATCAAAAAGCACTTTTGCAGAAAACatggtgaaaaaaaatggaaatgtgAAAAGTGTTCAAAGAAATATGCTGTTCAATCTGATTGGAAAGCTCATTCAAAAACATGTGGCACTAGAGAGTATAGATGTGACTGTGGAACCCTCTTCTCAAGGAGGGACAGTTTTATAACACATAGAGCATTTTGTGATGCATTAGCAGAAGAGAGTGCAAGAGCTATGACAAACATGAcaattccaattttaccctcaCAATCACAttcacaacaacaacagcatTCACCATCATCTTCTCATCACATGATTAATCTACAAACCCAATTCAATAATCCACAATCACAAGAACTTAATCatgtttttcaattaaaaaaagaacaacaaaatcaaaatcaaaatcaaagtttcAACCTTTCAGAAATTCCACCTTGGCTTGGTCCACCTAATGTTGAAaatctatcatcatcatcatcaattttctctcaaaataatcacttttcaTCACATCATCAagaaaaccctaaccctaatctTGTTCATATTTCTGGGCCCACACTTCCTTCTTACCAAACAGTACCTTCCCCACACATGTCAGCTACTGCATTATTGCAGAAAGCAGCTCAAATGGGTGCAACAATGAACAGAAATGGTTCTGCTTCTTCACCAGCTATGAATATTAGGACCCACCAACTTGATTCTGATTCTCTCAACAATGTCTCTTCTGGTaattttggtttgaatttgttGTCATCACCATCACAtgaacatcaacaacaacatcaaaacaCAACTActacaacatcaacaacatgtTTTAATATTCATGATGTTATGTTTTCGTCTTCTTCGTCGCCTTCTGGATTTGAAGGAGTACATTTTGATGAAATGTTTGGTGGCATTATGAATTCAAAGAAAGATAAAGGAAATGCCGCGGATGACGGTGGTGGAGGcggcggtggtggtggtggaaatGAAGGATTGACTAGAGATTTCTTGGGGCTTAGGCCATTGTCTCATAGTGATATTCTAAGTATTGCAGGGATTGGAAACTGTATGAATGATGAATCTCAAAAGCCATCATGGCAAGGTTAG 1455 0.301 MSNLTSASGEASEIGTSYSQEQHLAPPTQTVKKKRNLPGNPDPDAEVIALSPKSLLAKNRFICEICNKGFQRDQNLQLHRRGHNLPWKLKQRTSKEIRKKVYVCPETTCVHHDPSRALGDLTGIKKHFCRKHGEKKWKCEKCSKKYAVQSDWKAHSKTCGTREYRCDCGTLFSRRDSFITHRAFCDALAEESARAMTNMTIPILPSQSHSQQQQHSPSSSHHMINLQTQFNNPQSQELNHVFQLKKEQQNQNQNQSFNLSEIPPWLGPPNVENLSSSSSIFSQNNHFSSHHQENPNPNLVHISGPTLPSYQTVPSPHMSATALLQKAAQMGATMNRNGSASSPAMNIRTHQLDSDSLNNVSSGNFGLNLLSSPSHEHQQQHQNTTTTTSTTCFNIHDVMFSSSSSPSGFEGVHFDEMFGGIMNSKKDKGNAADDGGGGGGGGGGNEGLTRDFLGLRPLSHSDILSIAGIGNCMNDESQKPSWQG 484
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tsu08g00497 484 ProSiteProfiles Zinc finger C2H2 type domain profile. 61 83 IPR013087 -
Tsu08g00497 484 MobiDBLite consensus disorder prediction 1 35 - -
Tsu08g00497 484 PANTHER PROTEIN INDETERMINATE-DOMAIN 7 9 471 - -
Tsu08g00497 484 PANTHER SERINE/THREONINE-PROTEIN KINASE RIO 9 471 - -
Tsu08g00497 484 Gene3D Classic Zinc Finger 42 111 - -
Tsu08g00497 484 MobiDBLite consensus disorder prediction 425 445 - -
Tsu08g00497 484 SUPERFAMILY beta-beta-alpha zinc fingers 60 157 IPR036236 -
Tsu08g00497 484 Pfam Zinc-finger double-stranded RNA-binding 61 83 IPR022755 -
Tsu08g00497 484 Gene3D Classic Zinc Finger 130 196 - -
Tsu08g00497 484 ProSitePatterns Zinc finger C2H2 type domain signature. 63 83 IPR013087 -
Tsu08g00497 484 MobiDBLite consensus disorder prediction 1 45 - -
Tsu08g00497 484 SMART c2h2final6 137 157 IPR013087 -
Tsu08g00497 484 SMART c2h2final6 61 83 IPR013087 -
Tsu08g00497 484 SMART c2h2final6 102 132 IPR013087 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tsu08g00497 Tsu-Chr8 5114471 5117212 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tsu08g00497 1 484 IDZ Gene Family AT3G13810 47.417 1.79e-137 403
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Tsu08g00497 zf-C2H2_jaz 7e-05 CL0361
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tsu08g00497 K25870 - gmx:100808344 541.576
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Tsu02g05363 02 62181628 62184682 Tsu08g00497 08 5114471 5117212 PCT