Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tsu08g00494 ATgaaaaacatcaacaaaaacaacaacacaacTCAAGCATGTGCTGCATGTAAATACCAACGTAGGAAATGTGCTCCTGATTGCATATTAGCACCTTATTTTCCTCATGATCgtcaaaaacaatttcttaatGCACACAAATTATTTGGTGTtagtaatattaataaaatcattAAATATCTTGATCCTCCTCTAAAAGATCAAGCCATGAGAACAATCATTTATCAATCTAATATGCGGGCCAATGATCCTGTCGGTGGTTGTTATAAATACATTCAAGATCTTCAAGCTCAGATTGAATATTGTAAAATAGAACTTGATCTTGTTCTTCAACAACTCGCGGTTTTTCGAGCACAGTCTCatcctcaacaacaacaacaacaacaacaacaagtgGTTAATTATGGTGATCAAGCTATTATGAATTCAGATTCATTGTTAGGTTATTATAATCCATCTGGATCTGTTGTTTCGGCTACCACGCCGGCTCATTATTACAATGTTCAACAAGTGGTGACACCATTACAAGAACATGAACAAGAACAATACCTTATGATGCAAGAAAGtaatagtagtagtattaataGTACTACTCCTTTGCAACAACATATTAATAATTGGGGGGATATGCAAAACTCTATTTCTTTATCATCTTTGTCATTGCATGGACAAAGTAGTAATGCTAGTGATGAGTATGATCATAAGCCAACTCTTGATATACCATGTGAAGAAAGAAATGAATTAGGATTTGATTCCGGAGAAATACTTCACCACatTGATGAAGCAGTTTTGTTTAAGATAGATGATGGATTAATTAAAGCAGAGGGTGGCTACATTCAAGAAACACAAGCTGAAGAACAAGATCATGATCTAAAAGGAGCAGCAACATTGTTTACTCTAACAAATTGTACTAGTTGA 918 0.3072 MKNINKNNNTTQACAACKYQRRKCAPDCILAPYFPHDRQKQFLNAHKLFGVSNINKIIKYLDPPLKDQAMRTIIYQSNMRANDPVGGCYKYIQDLQAQIEYCKIELDLVLQQLAVFRAQSHPQQQQQQQQQVVNYGDQAIMNSDSLLGYYNPSGSVVSATTPAHYYNVQQVVTPLQEHEQEQYLMMQESNSSSINSTTPLQQHINNWGDMQNSISLSSLSLHGQSSNASDEYDHKPTLDIPCEERNELGFDSGEILHHIDEAVLFKIDDGLIKAEGGYIQETQAEEQDHDLKGAATLFTLTNCTS 305
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tsu08g00494 305 PANTHER LOB DOMAIN-CONTAINING PROTEIN 4-RELATED 8 243 - -
Tsu08g00494 305 Pfam Lateral organ boundaries (LOB) domain 13 108 IPR004883 -
Tsu08g00494 305 ProSiteProfiles LOB domain profile. 12 113 IPR004883 -
Tsu08g00494 305 PANTHER LOB DOMAIN-CONTAINING PROTEIN 22 8 243 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tsu08g00494 Tsu-Chr8 5098558 5099831 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tsu08g00494 12 152 AS2 family AT3G13850 60.544 2.20e-58 186
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF LOB Tsu08g00494 LOB 2.5e-35 No_clan
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Tsu08g00494 08 5098558 5099831 Tsu08g00494 08 5098558 5099831 ECH
Tsu02g05365 02 62200010 62200864 Tsu08g00494 08 5098558 5099831 PCT