Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tsu08g00489 ATGGCTTCTTCATCCTCTCAGGCTGTGACTACAGTgtctctaaaaaaatatgatgttttCATCAGTTTTAGAGGTGAGGACACTCGATCTGGTTTCACAAGCCATCTTCACGCTGCCTTGAAGAGAAGCTATTTGGAGACTTACATAGACTATAGGATTGAAAAAGGAAACCAAGTTTGGGCAGAACTTGAGAAAGCAATCAAAGATTCCACTCTGTTTCTTGTTGTGTTCTCAGAGAACTATGCATCTTCAACATGGTGTTTGAAAGAACTCGTTGAAATAATGGAGTGCCACAAAAATGGGCAAGTTGTTGTTCCTGTGTTCTACCAAATTGACCCTTCACATGTAAGAAAACAGACCGGCAGTTATGGCATTGCGTTGGCAAAACATGAGAAGCAAGTCAACATTGATGACAAGATGATGCAAAATTGGAAGAATGCTCTTTTTCAAGCAGCTAATTTATCTGGTTTTCATTCTGCTGCATACCGgTCTGAATCTGACCTGATCGAAGAGATTACTAGAGATGTACTAAGAAAATTAAACCACAAGGACACACATGAACTTACATGTAATTTCATACTCGATGAAAACTATTGGAGCATTCgatctttaataaaatttgattcatCAGAAGTTCAAATCATTGGACTTTGGGGTATGGGGGGCATAGGTAAGACAACCCTTGCTGCTGCTATGTTTCAAAGGTTCTCTTCCAAGTATGAAGGCAGCTGCTTCTTAGAAGATGTGACAAAAGAATCAATAAGTCCTGGAATCAAATACACATGCAAAAAACTTTTTTCCAAGTTACTAAAGGAAGATGTTGATATTGACACTTCTAAATTAATACCATCTATGATCGTTAGAAGACTCAAAAGCATGAAATCTTTCATTGTGCTAGATGATGTGCATACTTCAGAACTTCTGCAAAACTTGATTGCAGTTGGATGTGCTTGGCTAGGAGTTGGTAGCACAATCATTGTGACTACAAGAGATAAGCATGTACTGATAAGTGGAAGAATTGACAAAATTCATGAAGTTAAAAAGATGAACTCCCAAAACTCCCTCCAACTTTTCAGCTTGAATGCTTTTAACAAAGTCTTGCCTAAGGAGGGATACACCGAACTCTCAAAGAAAGCAATTGATTACGCCAAAGGAAACCCTTTAGCTGTGAAAGTGTTGGGATCACTTTTATGCTGTAAAAGTGAAATAGAATGGAACTGTGCATTAGCTAAACTGAAGAAAATTCCCAATACAGAAATTGATGGGATACTGAGATGGAGTTATAATGAATTGGACGAACAAGAGAAAGATATACTTCTAGACATTGCATGCTTTTTCAAAGGACATGAAAGGCATAaggtaacaaaaatattaaatgagtGTGGTTTCTTTGCAGATATAGGGATAAAACATCTTTTAGACAAGGCTCTTATAAGAGTTGACATTGAAAATTGCATACAAATGCATGACTTAATACAAGAAATGGGAAAACAAATTGTTCGCGAACAATCTCTTAAAAATCCCGGACAACGCAGTAGATTATGGGATCAGAAGGAAGTGTGCGACgtattgaaaaataatagaGGAACCGAGATTGTTGAAGCCATAATTTTAGATGCAAAtgaatgtacaaaaataaatctgaGCCCCAAAGCATTTGAAAAGATGGTAAACCTAAGACTGCTTGCTTTACAAGACCACAAGGAAATTAAATCTGTAAGCCTTTCACATGGTCTTGACTTATTGCCAGaaagtttgagatatttttTGTGGGATGGATATCCATGGAAGTCTCTACCTCCAAACTTTTGTCCTGAAATGCTTGTGGAGCTTTCCTTGCAAGAAAGCCATGTAGAAAAACTTTGGAATGGAGTACTGGAATTGCCAAATTTGGAGATACTTAACCTTGGTCGCTCCAAAAAGTTGATAGAGTGTCCAAATGTATCTGGTTCTCCAAATCTAACACTTGTATATCTTGGTGGTTGTGAAAGCTTGGTTGAAGTTGATTCATCAATTTTTCTTCTCCAAAAGCTCGAATATTTAAACACGTCTGAATGTGCGTCACTTAAGAGCCTTTCCAGTAACACTTGTTCACCTGCTCTCGTTGAATTGAATGCCACAGATTGCATAAATCTCAAAGAGTTCTCAGTCACATTTGCTTCCGCCGATGGTTTGGTTTTGAATTTAGCAAAGTGGTATGGGAATGAACTTCCACCATcaatattgaataaaaataatctTGCAACCTTTCACTTTCCTTTGATTGAATGTCTTGTGGATCTTCCTCAAAACTTTGCCAGTGGTATTTGGCTTGTTAGTCCACCGAATCGTGAACCTGACCCTTCGATCACCTTACGTAAAATATTTTCTAGTCCTGCCTTCATCAGTTTAAAACTGTTAATCTTATCTGATATTGCTATCTTGTCTGAAATCCCAGACAATATCTCCTTACTATCGTCATTAGAGACTTTAACACTAATTGGTATTGCCATTAGAAGCTTGCCAGAAACCATTATGAATCTTCCCCGACTCAAACAGCTTGAAGTTTACGATTGTAAAATGCTTCAATCTATTCCGGCATTTTCACAATTCATTCCATTTGTCATTGTCTGGAATTGTGAATCCCTCGAGAAAGTGTTGAGTTCAACAGTTGAACCTTCTGATAAAACCACCAAtggttttgttttctttaactGCATACCATTGGATCCACATTCATACCAAACAGTTCTGAAAGATGCTTTTTTAAGGATTGAACTTAGAGCAAGACTAAATTCAGAACGATTTTATGGGTACTTCTTACCTGCTATGCCAGGCATAGAATATTGCTTCCATTACCGTTCTACACAAGGTTCATTCGCTCTTGAGCTTCCTCCTAATTTGTTGGGTTTCTCCTACTACTTGGTTCTTTCTCAGGGGCATCTGGCAGATGGTGTAGAATTTGGATGTGACTGCTACTTGGACAATATTTCAGGTGAAAGGATCCGTATAACAAGTTACGCAAGAGCCTGCCTCTTTACTTATCACAAGAATTCAATCGACATGATATCAGATCATATGATTTTATGGTATGATCCAGAAAGTTTCAAGCAGATAATGGAAGAAATAAATGCCTTTAATGATGTGAACACCACCAGTACTTACAATCCAAAGCTTACATTTGAATTCCTTATTTATGAAAGTGAAAATCTATATGAAGTAGCGATAAAAGAGTGTGGGTTTCGTTGGATATATCAAGAAGAAGCAGCTTCTTTGACAGTTTTTGAATCccatgatgaagatgaagaaacaGTTCCTCCAACAAGGAAATTAAAGCAACGTGTATATGGCCGAACTCCAATGCCAAGCCTAGGATCAGATGAAACAAAAGGGTTGAGGTATTTGCTTGAATAA 3393 0.3613 MASSSSQAVTTVSLKKYDVFISFRGEDTRSGFTSHLHAALKRSYLETYIDYRIEKGNQVWAELEKAIKDSTLFLVVFSENYASSTWCLKELVEIMECHKNGQVVVPVFYQIDPSHVRKQTGSYGIALAKHEKQVNIDDKMMQNWKNALFQAANLSGFHSAAYRSESDLIEEITRDVLRKLNHKDTHELTCNFILDENYWSIRSLIKFDSSEVQIIGLWGMGGIGKTTLAAAMFQRFSSKYEGSCFLEDVTKESISPGIKYTCKKLFSKLLKEDVDIDTSKLIPSMIVRRLKSMKSFIVLDDVHTSELLQNLIAVGCAWLGVGSTIIVTTRDKHVLISGRIDKIHEVKKMNSQNSLQLFSLNAFNKVLPKEGYTELSKKAIDYAKGNPLAVKVLGSLLCCKSEIEWNCALAKLKKIPNTEIDGILRWSYNELDEQEKDILLDIACFFKGHERHKVTKILNECGFFADIGIKHLLDKALIRVDIENCIQMHDLIQEMGKQIVREQSLKNPGQRSRLWDQKEVCDVLKNNRGTEIVEAIILDANECTKINLSPKAFEKMVNLRLLALQDHKEIKSVSLSHGLDLLPESLRYFLWDGYPWKSLPPNFCPEMLVELSLQESHVEKLWNGVLELPNLEILNLGRSKKLIECPNVSGSPNLTLVYLGGCESLVEVDSSIFLLQKLEYLNTSECASLKSLSSNTCSPALVELNATDCINLKEFSVTFASADGLVLNLAKWYGNELPPSILNKNNLATFHFPLIECLVDLPQNFASGIWLVSPPNREPDPSITLRKIFSSPAFISLKLLILSDIAILSEIPDNISLLSSLETLTLIGIAIRSLPETIMNLPRLKQLEVYDCKMLQSIPAFSQFIPFVIVWNCESLEKVLSSTVEPSDKTTNGFVFFNCIPLDPHSYQTVLKDAFLRIELRARLNSERFYGYFLPAMPGIEYCFHYRSTQGSFALELPPNLLGFSYYLVLSQGHLADGVEFGCDCYLDNISGERIRITSYARACLFTYHKNSIDMISDHMILWYDPESFKQIMEEINAFNDVNTTSTYNPKLTFEFLIYESENLYEVAIKECGFRWIYQEEAASLTVFESHDEDEETVPPTRKLKQRVYGRTPMPSLGSDETKGLRYLLE 1130
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tsu08g00489 1130 Gene3D Ribonuclease Inhibitor 726 886 IPR032675 -
Tsu08g00489 1130 Gene3D Ribonuclease Inhibitor 487 725 IPR032675 -
Tsu08g00489 1130 PRINTS Disease resistance protein signature 626 642 - -
Tsu08g00489 1130 PRINTS Disease resistance protein signature 383 397 - -
Tsu08g00489 1130 PRINTS Disease resistance protein signature 214 229 - -
Tsu08g00489 1130 PRINTS Disease resistance protein signature 289 303 - -
Tsu08g00489 1130 SUPERFAMILY "Winged helix" DNA-binding domain 419 525 IPR036390 -
Tsu08g00489 1130 PANTHER RESISTANCE PROTEIN (TIR-NBS-LRR CLASS), PUTATIVE-RELATED 11 1055 - -
Tsu08g00489 1130 PANTHER LEUCINE-RICH REPEAT-CONTAINING PROTEIN 11 1055 IPR044974 GO:0006952
Tsu08g00489 1130 SUPERFAMILY L domain-like 537 874 - -
Tsu08g00489 1130 SMART till_3 16 154 IPR000157 GO:0007165
Tsu08g00489 1130 Pfam NB-ARC domain 204 430 IPR002182 GO:0043531
Tsu08g00489 1130 SMART AAA_5 211 350 IPR003593 -
Tsu08g00489 1130 SUPERFAMILY Toll/Interleukin receptor TIR domain 15 157 IPR035897 -
Tsu08g00489 1130 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 190 442 IPR027417 -
Tsu08g00489 1130 Gene3D - 193 352 IPR027417 -
Tsu08g00489 1130 ProSiteProfiles TIR domain profile. 15 180 IPR000157 GO:0007165
Tsu08g00489 1130 Gene3D - 353 432 IPR042197 -
Tsu08g00489 1130 Pfam TIR domain 16 188 IPR000157 GO:0007165
Tsu08g00489 1130 Gene3D - 13 187 IPR035897 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tsu08g00489 Tsu-Chr8 4980722 4985009 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tsu08g00489 13 827 WRKY Transcription Factor Family AT4G12020 32.381 1.97e-95 333
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tsu08g00489 - - mtr:MTR_8g018480 1558.89