Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tsu08g00488 ATGTGCAACATACTTCTTTCCAAGTTACTAAGGGAAGATCTTCATATTGACACTTGTAAAGCAATACCATCCATGATCATTAGAAGACTCAAACGTATGAAATCTTTCATTGTACTAGATGATGTACATACTTTAGAACTTCTGCAAAACTTGATTGGAGTGGGAAGTGGTTGGCTAGGAACTGGTAGCATAGTCATTGTGACAACAAGAGATAAGCATGTGCTAATAAGTGGAGGAATTCAAAAAATTCATCAAGTTAAAAAGATGAACCCCCAAACTTCTCTTAAACTTTTTAGCATGAATGCTTTTGACAAAGTATTACCTAAGGAGGGATATGTGGAGTTGTCAAAAAGAGCAATTGATTATGCTGAAGGCAACCCTTTAGCTCTGAGAGTATTAGGATCATTTCTTCGTTGCAAAAGTGAAATAGAATGGAACTCTGCACTAGCTAAATTGAAGGAAATTCCCAATACTGATATTGATAGAATATTGAGATGGAGTTATAATGAATTGGATGATAAAGAGAAAAGCATATTTTTGGACATTGCATGCGTTTTGAAAGGTTATAAATGGGATAgtgtaacaaaaatattaaatgagtGTGGCTTCTTTGCAGATATAGGGTTAAGAGATCTTTTAGACAAGGCTCTTATAAGAGTTGACTTTGAATATCGCATACAAATGCATGATTTGATACAAGAAATGGGAAAACAAATTGTTCGTGAAGAATCTCCTAATCATCCCGGAGAACGCAGTAGATTATGTGATCCTAAGGAAATTTGTGACGTGTTGATGAATAATAAAGGGACTGAGTTTGTTGAAgccatatttttttatgctactgaatatataaatataactttAAGTCCCAACGCATTTGAAAAGATGGTAAACCTAAGGTTACTTGTTTTTCAAGACCACAAGGAAATTAAATCGGTAAGCCTTCCACATGGTCTTGATTTATTGCCagaaaatttgagatatttgttGTGGAATGGATATCCATGGAAGTCTCTGCCTCCAACCTTTTGTCCTCAAATGCTTGTGGAGCTTTGCATGCAACACAGTAATGTAGAAAAACTCTGGAATGGAAAAATGAATTTGCCAAATTTAAAGACACTTAACCTCAATTCCTCCCACAAGTTGATAGAGTGTCCAAATCTGTCTGGTTCCCCGAATCTAACGTTTTTAAGTCTTGAAGATTGTCAAAGCATGCTTGAAGTTGATTCATCAATTTTCTTTCTCCAAAAGCTTCAAATTTTAAAGTTGATAGGATGTACATCACTTAAGAACCTTTCGAGTAACACTTGTTCACCAGTCCTTCAAGAATTATATGCCTGGGATTGCATCAATCTCAAAGAGTTTTCAGTCACATTTACCTCCGTGGATCAGTTGCGTGTTGGTATATCAGAGTATGGTGGGAATGAACTTCCATCATCATTATTGAAACTAAAGAATCTTGAAATCTTTTTCTTTCCTATGATTGAATGTCTTGTGGATCTTCCTGAAAACTTTGCCAATCATATTAACCTTTGGAGTTCAGTGAATCCTGAGCATGATCCTTTCATCACCTTACATAAAGTATTTTCTAGTCCTGCCCTCATCACTTTAAAACACTTATACCTTAATGGTACTCCTACCTTGTCTGAAATCCCAGATAGTATCTCCTTATTATCATCATTAGAGTCTTTAATGCTAAGGGATATGGCCATTACAAGCTTGCCCGAGAACATTAAGTATCTCCCCCAACTCAATCAACTTAATGTTGTCCGTTGTGAAAAGCTTCAATCTATTCCAGCGCTTTCGCAGTACATTCCATTTTTCATTGTCATGAATTGTGAATCTCTAGAGAAAGTGTTGAGTTCAATGGATGAAGCATGTGACAAACCCAATCCTTGTTTTACTGTGCTCATTAACTGCAAAAAATTGGATCAACATTCATACCAAACAGTTTTGGAAGATGCTATTGATGGGATTGAACTTAGAGCAAGACTAAATTCAGCAAATGAAGATGATACTATTGGGTACTTGTTACCTGATATGCCTGGCAGAGAATATTGGTTCAATTACCGTTCTACACAAATTTCTTTCACTCTTGAATTTCCTCCTaatttgttgggttttgcctaCTACTTGGTTCTTTCTCAAGGCTATATGCAAAAACGTGTAGATTTTGGATGTGAGTGCTACTTGGAATATAGTTCAGGGGAAAGGATTTATATAACAAGTTTCACAAGATCCAACTCGTTCATTTTGGAATTAAGTTACAGTCCTTTACTCCACATGATGTCAGATCATGTGGTTTTATGGTATGATCCAATAAGTTGCAAGAAGATAATGGAAGACATAAAAGCCATTAATGATGCGAACATCACCAGTTGCTGTCCAAAGCTTGCATTTAGATTCTTTATTGATGAAGCTTTACATGATGGAACTTCGGATGATGAAGTAGCGATAAAAGAGTGTGGGTTTCGCTGGATATATAAAGAAGCAGAAGATTTTTCAACAGTTTCTGAATcccaagaagatgaagaagcaaaagaaagaattcatCCAAGAAAGACATCTTCGAAAATCTTGAAATATTGGGGTATTTATTGA 2601 0.3426 MCNILLSKLLREDLHIDTCKAIPSMIIRRLKRMKSFIVLDDVHTLELLQNLIGVGSGWLGTGSIVIVTTRDKHVLISGGIQKIHQVKKMNPQTSLKLFSMNAFDKVLPKEGYVELSKRAIDYAEGNPLALRVLGSFLRCKSEIEWNSALAKLKEIPNTDIDRILRWSYNELDDKEKSIFLDIACVLKGYKWDSVTKILNECGFFADIGLRDLLDKALIRVDFEYRIQMHDLIQEMGKQIVREESPNHPGERSRLCDPKEICDVLMNNKGTEFVEAIFFYATEYINITLSPNAFEKMVNLRLLVFQDHKEIKSVSLPHGLDLLPENLRYLLWNGYPWKSLPPTFCPQMLVELCMQHSNVEKLWNGKMNLPNLKTLNLNSSHKLIECPNLSGSPNLTFLSLEDCQSMLEVDSSIFFLQKLQILKLIGCTSLKNLSSNTCSPVLQELYAWDCINLKEFSVTFTSVDQLRVGISEYGGNELPSSLLKLKNLEIFFFPMIECLVDLPENFANHINLWSSVNPEHDPFITLHKVFSSPALITLKHLYLNGTPTLSEIPDSISLLSSLESLMLRDMAITSLPENIKYLPQLNQLNVVRCEKLQSIPALSQYIPFFIVMNCESLEKVLSSMDEACDKPNPCFTVLINCKKLDQHSYQTVLEDAIDGIELRARLNSANEDDTIGYLLPDMPGREYWFNYRSTQISFTLEFPPNLLGFAYYLVLSQGYMQKRVDFGCECYLEYSSGERIYITSFTRSNSFILELSYSPLLHMMSDHVVLWYDPISCKKIMEDIKAINDANITSCCPKLAFRFFIDEALHDGTSDDEVAIKECGFRWIYKEAEDFSTVSESQEDEEAKERIHPRKTSSKILKYWGIY 866
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tsu08g00488 866 Gene3D - 1 79 IPR027417 -
Tsu08g00488 866 PANTHER LEUCINE-RICH REPEAT-CONTAINING PROTEIN 5 765 IPR044974 GO:0006952
Tsu08g00488 866 Gene3D - 89 172 IPR042197 -
Tsu08g00488 866 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 10 182 IPR027417 -
Tsu08g00488 866 SUPERFAMILY L domain-like 227 618 - -
Tsu08g00488 866 Pfam NB-ARC domain 13 170 IPR002182 GO:0043531
Tsu08g00488 866 PRINTS Disease resistance protein signature 123 137 - -
Tsu08g00488 866 PRINTS Disease resistance protein signature 366 382 - -
Tsu08g00488 866 PRINTS Disease resistance protein signature 29 43 - -
Tsu08g00488 866 PANTHER RESISTANCE PROTEIN (TIR-NBS-LRR CLASS), PUTATIVE-RELATED 5 765 - -
Tsu08g00488 866 Gene3D Ribonuclease Inhibitor 263 468 IPR032675 -
Tsu08g00488 866 Gene3D Ribonuclease Inhibitor 469 647 IPR032675 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tsu08g00488 Tsu-Chr8 4972381 4975821 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tsu08g00488 5 587 WRKY Transcription Factor Family AT4G12020 34.396 6.40e-74 263
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tsu08g00488 - - mtr:MTR_8g018480 1115.91