Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tsu08g00486 atGGCTTCTTCATCCTCTCATGCTGTGACTACAGTGTCTctgaaaaaatatgatgttttCATCAGTTTTAGAGGCGAGGACACTCGATCTAGTTTCACAAGCCATCTTCACGCTGCCTTGAAGCGAAGATATTTGGAGACATACATAGACTACAGGATTGAAAAAGGAAACCAAGTTTGGGCTGAACTTGAGAAAGCAATCAAAGATTCAACTCTGTTTCTTGTTGTGTTCTCAGAGAACTATGCAAATTCAACGTGGTGTTTGAATGAACTTGTTGAAATAATGGAATGCCACAAAAATGAACAAGGTGTTGTGGTTATTCCTGTGTTCTACCGAATTGACCCTTCACACGTTCGGAAGCAGACCGGGAGTTACGGCACAGCGTTGGCAAAACACAAGAAGCGAGGCAAGATTGATGATAAGATGATGCACAATTGGAAGAATGCTCTTTTTCAAGCAGCTAATTTATCCGGTTTTCATTCTACTACAAACGGGACCGAATCTGATTTGATCGAAGAGATTACTCGAGATGTATTAGGAAAGTTAAACCGCAATTACCCAAATGAGCTTAGATGTAATTTTATATTGGATGAAAACTACAGGAAAGTTCAGTCTTTCATAAAACAAATTGATTCATCAGAAGTTCAAATCATTGGACTTTGGGGCATGGGGGGCATAGGAAAGACAACACTTGCTACTGTTATCTTTCAGAAACTCTCTTTTCAGTATGAAGGCAGCTGTTTCTTAGAAAATGTGACTGAAGTTTCAAAAACGCATGGAATCAATTATACCTGCAACAAACTTCTCTCCAAGTTACTAAAGGAAGATTTTGATATTGATACTTCTAAATTAATACCATCCATGATCATTGAAAGACTCAAGCGCATGAAATCTTTCATTGTATTAGATGATGTACATACTTCAGAACTTCTGCAAAACTTGATTGGAGTGGGACATGGTTGGCTAGGATCTGGTAGCACGGTCATTGTGACGACAAGGGATAAGCATGTTCTAATAAGTGGAGGAATTGAAAAAATTCATCAAGTTAAGAAGATGAACTCCCAAAACTCTCTCCAACTTTTTAGCTTGAATGCATTTGGCAAAGTCTTGCCTAAGGAGGAATATGTGGAGCTATCAGAAAGAGCAATTGGTTATGCCGATGGCAACCCTTTAGCTCTAGAAGTATTAGGATCATTTCTTCGTTGCAAAAGTGAAATAGAATGGAAATGTGCACTAGCTAAATTGAAGGAAATTCCCAATGCCAAAATTGATAGGATCTTGAAATGGAGTTATGATGAATTGGATGATAAAGAGAAAAACATATTTCTGGACATTGCATTCGTTTTCAAAGGTTATAGACGGGATAaggtaacaaaaatattaaataagtgtgGTTTTTTTGCAGATATAGGGATAAGCCGTCTTTTAGACATGACTCTTATAAGAATTGACTTTGAAAATTGCATACAAATGCACGATTTAATACAAGCAATGGGAAAACAAATTGTTTTCGAAGAATCTCCTAAAAATCCTGGACAACGCAGTAGATTATGTGATCCCAAGGAAGTTTGTGACGTATTGAAAAATAATAGCGTAACAGATATTGTTGAAGTTATAGTTATAGATGCtaatgaaaatacaaaaatcaatttaagCCCCAAAGCATTTAAAAAGATGGTAAACCTAAGGTTACTTGCTTTTCGAAACCATGGGGGAATCAAATCAGTAAGCCTTCCTCGTGGTCTTGACTTATTGCCAGAGAATTTGAGATATTTTTTGTGGGACGGATATCCATTAAAGTCTCTGCCTCCAACTTTTTGTCCTGAAATGCTTGTAGAGCTTTCCCTGCAAGATAGCCTCGTAGAAAAACTTTGGAATGGAGAAATGGCGAATTTGCCGAATTTAGAGATACTTGACCTTGCTGGCTCCAAAAAGTTGATAGAGTGTCCAAATGTGTCTGGTTCCCCGAATCTACAATATATAAGACTTGATTATTGTGAAAGCATGCCTGAAGTTGATTCATCCATTTTCCTTCTCCAAAAGCTTGTAAGTTTAAGCATGTATGAATGTAAGTCAGTTAAGAGCCTTTCTAGTAACACTTGTTCGCCAGCACTAGTTGAATTAATTGCTACCGGTTGCATCAATCTCCGAGAGTTCTCAATCTCATTTGCTTCCACTAAACATTTGAATTTGGGTATATCAAATTGGGATGGGAATGAACTTCCATCAtcaatattgaataaaaaaaatcttgaaagcTTCTTCTTTCCTCTGATTGAATGTCTTATGGATCTTCCTGAAAACTTTGCCGAACGTATTTGCCTTGCGACTCCATTGAATCATGAACTTGACCCTTCCATCACCTTACATAAAGTACTTCCTAGTCCCGCCTTCATAACTTTAAAACACTTGCTCATTTCTGATATCCCTACGTTGTCTGACATCCCAGACAATATCTCCTTACTATCATCATTAGAGTCTTTAACACTAATTGATATTGGTATTAGAAGCTTGCCTGAAACCATTAAGTATCTTCCCCAACTCTTTGAACTTAGTGTTTTTAACTGTGAAATGCTTCAATCTACTCCGGCGCTTTCACAGTTCATTCAATATTTCATTGTCTCAAATTGTGAATCTCTTGAGACAGTGTTGAGTTCAATGGGGGAACCTTATGACAAACCCATTCCTTGTACTGTTCTCCTTAATTGCAAAAATTTGGATTCTCATTCTTACCATACAGTTCTGAAAGATGTTATTTCTGGGATTGAACTTGGAGCAAGACTAAATTCAGCAAATGAAGAAGGTGATGATACCATTCAGTACCTGTTACCTGCTATGCAAGGCATAGAATATTGTTCCCATTACAGTTCTACACAAGTCTCTTTCACTCTTGAGCTTCCTCCAAATTTGTTCGGTTTCGCCTACTACTTTGTTCTTTCTCAAGGCCATGTGGGAGAAGGTGTAGGTTTTGGATGTGACTGCTACTTGGACGACATTTCAGGTGAAAGGATCTGTATAACAAGAGAAAACATCTTCAAATTTCGCTGGCAGTGTGATGAGCGTATAATCCTCTTGAACTCAGATCATGTGGTTTTATGGTATGATCCAGTAAGCTGCAAGAAGATAATGGAAGAAATAAAAGCCATTAATGATGTAAACAACACCAGTTACAATCCAAAGCTTACATTTAGATTCTTTATTGATGAAAATGTATGTGATGAGGTAGTGATACAAGAATGTGGGTTTCTCTGGATATATCAAGAAGAAATGGTTTCTGCAACAATTTTTGAATCCCGTGATCAAGAAGAAACTGTGTCTCCGTCAGATTTGCAATCCAATTATCAAGAAGAAGCAGTTCCTCCA 3363 0.3669 MASSSSHAVTTVSLKKYDVFISFRGEDTRSSFTSHLHAALKRRYLETYIDYRIEKGNQVWAELEKAIKDSTLFLVVFSENYANSTWCLNELVEIMECHKNEQGVVVIPVFYRIDPSHVRKQTGSYGTALAKHKKRGKIDDKMMHNWKNALFQAANLSGFHSTTNGTESDLIEEITRDVLGKLNRNYPNELRCNFILDENYRKVQSFIKQIDSSEVQIIGLWGMGGIGKTTLATVIFQKLSFQYEGSCFLENVTEVSKTHGINYTCNKLLSKLLKEDFDIDTSKLIPSMIIERLKRMKSFIVLDDVHTSELLQNLIGVGHGWLGSGSTVIVTTRDKHVLISGGIEKIHQVKKMNSQNSLQLFSLNAFGKVLPKEEYVELSERAIGYADGNPLALEVLGSFLRCKSEIEWKCALAKLKEIPNAKIDRILKWSYDELDDKEKNIFLDIAFVFKGYRRDKVTKILNKCGFFADIGISRLLDMTLIRIDFENCIQMHDLIQAMGKQIVFEESPKNPGQRSRLCDPKEVCDVLKNNSVTDIVEVIVIDANENTKINLSPKAFKKMVNLRLLAFRNHGGIKSVSLPRGLDLLPENLRYFLWDGYPLKSLPPTFCPEMLVELSLQDSLVEKLWNGEMANLPNLEILDLAGSKKLIECPNVSGSPNLQYIRLDYCESMPEVDSSIFLLQKLVSLSMYECKSVKSLSSNTCSPALVELIATGCINLREFSISFASTKHLNLGISNWDGNELPSSILNKKNLESFFFPLIECLMDLPENFAERICLATPLNHELDPSITLHKVLPSPAFITLKHLLISDIPTLSDIPDNISLLSSLESLTLIDIGIRSLPETIKYLPQLFELSVFNCEMLQSTPALSQFIQYFIVSNCESLETVLSSMGEPYDKPIPCTVLLNCKNLDSHSYHTVLKDVISGIELGARLNSANEEGDDTIQYLLPAMQGIEYCSHYSSTQVSFTLELPPNLFGFAYYFVLSQGHVGEGVGFGCDCYLDDISGERICITRENIFKFRWQCDERIILLNSDHVVLWYDPVSCKKIMEEIKAINDVNNTSYNPKLTFRFFIDENVCDEVVIQECGFLWIYQEEMVSATIFESRDQEETVSPSDLQSNYQEEAVPP 1121
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tsu08g00486 1121 Gene3D - 351 435 IPR042197 -
Tsu08g00486 1121 SUPERFAMILY Toll/Interleukin receptor TIR domain 15 159 IPR035897 -
Tsu08g00486 1121 PANTHER RESISTANCE PROTEIN (TIR-NBS-LRR CLASS), PUTATIVE-RELATED 11 1021 - -
Tsu08g00486 1121 Pfam TIR domain 16 189 IPR000157 GO:0007165
Tsu08g00486 1121 ProSiteProfiles TIR domain profile. 15 182 IPR000157 GO:0007165
Tsu08g00486 1121 PRINTS Disease resistance protein signature 217 232 - -
Tsu08g00486 1121 PRINTS Disease resistance protein signature 386 400 - -
Tsu08g00486 1121 PRINTS Disease resistance protein signature 292 306 - -
Tsu08g00486 1121 PRINTS Disease resistance protein signature 630 646 - -
Tsu08g00486 1121 Gene3D Ribonuclease Inhibitor 475 769 IPR032675 -
Tsu08g00486 1121 Gene3D - 12 182 IPR035897 -
Tsu08g00486 1121 SUPERFAMILY L domain-like 537 886 - -
Tsu08g00486 1121 SUPERFAMILY "Winged helix" DNA-binding domain 422 528 IPR036390 -
Tsu08g00486 1121 MobiDBLite consensus disorder prediction 1098 1121 - -
Tsu08g00486 1121 Gene3D Ribonuclease Inhibitor 782 942 IPR032675 -
Tsu08g00486 1121 MobiDBLite consensus disorder prediction 1098 1115 - -
Tsu08g00486 1121 Pfam NB-ARC domain 203 432 IPR002182 GO:0043531
Tsu08g00486 1121 Gene3D - 183 342 IPR027417 -
Tsu08g00486 1121 SMART till_3 16 156 IPR000157 GO:0007165
Tsu08g00486 1121 PANTHER LEUCINE-RICH REPEAT-CONTAINING PROTEIN 11 1021 IPR044974 GO:0006952
Tsu08g00486 1121 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 185 445 IPR027417 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tsu08g00486 Tsu-Chr8 4927951 4959188 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tsu08g00486 13 851 WRKY Transcription Factor Family AT4G12020 32.515 4.67e-96 335
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tsu08g00486 - - mtr:MTR_8g018480 1567.36