Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tsu08g00485 atgttCATGGCTTCTTCATCCTCTCAAACTGTCACCGCTGTAGATCTGAAAAAGTATGATGTTTTCATCAGCTTTAGAGGCGACGACACTCGATCTGGTTTCACAAGCCATCTTCACGCTGCCTTGAAGCGAAGCTATTTGGAGACTTATATAGACTACAGGATTGAAAAAGGAAACCAAGTTTGGACAGAACTTGTGAAAGCAATCAAATATTCCACTCTGTGTCTTGTTGTGTTCTCAGAGAACTATGCATCTTCAACATGGTGTTTGAACGAACTTGTTGAAATAATGGAATGCCACAAAAATGGACAAGTTGTTGTTCCTGTATTCTACCAAACTGACCCTTCACATGTAAGGAAACAAACAGGGAGTTATGGCACTGCGTTGGCAAAACACAAGAAGCAAGTTGGCAAGAATGATAATCATAAGATCCAAAATTGGAAGAATGCTCTAACTCAAGCAGCTGATTTATCTGGTTTTCCTTCTACAACATCCGGGACcgaatttgatttgattgaagACATTGTCAGAGTTGTATTACGAAAGTTAAACCACAACTACACACACGAGCTTACATGTAATTTTATATTGGATGGAAACTATTGGACAATTCGGTCTTCAATAAATGAAATTGATTCAACAGAAGTTCAAACCATTGGACTTTGGGGCATGGGGGGCATAGGTAAGACAACACTTGCTCTTGCTATGTTTCACAAAGTCTCTTCTAAGTATGAAGGTAGTTGCTTCTTAGAAAATGTGACAGAAGTATCAACAAGGCATGGAATAAACTATACATGCAACAAACTTCTTTCCAAGTTACTAAGGGAAGATGTTGATATCGACACTTCTAAAGCAATACCATCCATGATCATTAGAAGACTCAAACACATGAAGTCTTTTATTGTACTAGATGATGTACATACTTTAGAACTTCTCCAAAATTTGATTGGAGTGGAACATAGTTTGCTAGGAGCTGGTAGCACGGTCATTGTGACGACAAGGGATAAACATGTCTTGATAAGTGGAGgaattgaaaatattcatcaagtTAAAAAGATGAACTCCCAAAACTCTCTCCAACTTCTTAGCTTGAATGCTTTTGACAGAGTCTTACCTAAGGAGGGATTTATGGAGCTCTCAGAAAGAGCAATTGATTATGCCGAAGGCAACCCTTTAGCTCTGAAAGTTTTAGGATCATTTCTTCGTTACAAAAGTGAAATAGAATGGAATTGTGCACTAGCTAAACTGAAGGAAATTCCTAACGCAAAAATTGATAGGGTATTGAGATGGAGTTATAATGAATTGGACGATatggagaaaaaaatatttctagaCATTACATTGTTTTTCAAAGGATATAATCTGGATAgggtaacaaaaatattaaatgggtGTGGTTTCTATGCAGATATAGGGATAAGCCGTCTTTTAGACATGGCTCTTATAAGAGTTGACTTTCAAAATTGCATACAAATGCACAATTTGATACAAGAAATGGGAAAACAAATTGTTCTCGAAGAATGTCCGAAAAATCCCGGACAACGTAGTAGATTATGTGATCCCAATGAAGTTTGTGACgtattgaaaaataatagagGAACAGAGATTGTTGAAGCCATAGTTTTAGATGCTACtaaatatacaaatatcaatttaaGCCCCAAATCATTTGAAAAGATGGTAAACCTTAGGTTACTTGTTTTTCGAGACCCCCATGGAATCAGAACTGTAAGCCTTCCACATGGTCTTGACTTTTTGCCAgaaaatttgagatttttttcatGGGATGGATATCCATTGAAGTCGTTGCCTTCAACATTTTCTCCTAAAATGCTTGTGGAGCTTTCCATGCAACATAGCTGTGCAGAAAAACTTTGGAATGGAGAAATGAATTTACCAAATTTAGAGATACTTGACCTCAGTGGATCCAAAAAGTTGATAAAGTGTCCAAATGTGTCTGGTTCTCCGAATCTAAAAGGTATAACACTTGATTATTGTGAAAACTTGCCTGAAGTTGATTCATCAATTTTCCTTCTCCAGAAGCTTGAAAGGTTATCGTTGTGGAGATGTATATCACTTAAGAGCCTTTCCAGTAACACTTGTTCACCAGCCCTCATTGAATTATATGCTTGGAATTGCATCAATCTCCAAGAGTTCTCAATCCCATTTGCTTCCACTGATGGTTTGCTTTTGTGTTTAACAAAGGCTTGGAATGGGAATGAACTTCCATCATcaatattgaataaaacaaatCTTAAAAGCTTTTACTTTCCTTTGATTGAATGTCTTGTGGATCTTCCTGAAAACTTTGCCCATCGTATCTCCCTCAATACTCCACCAAATGGTGACCATGACCCTTCCATCACCTTACATAAAGTACTTTCTAGTCCTGCCTTCATCACTTTAAGACACTTAATCCTTTGTAATATTCCTACCTTGTCTGAAATCCCAGACAATATCTCCTTACTATCATCATTAGAGACTTTAGAACTATATTATATTGGCATTAGAAGCTTGCCCGAAACCATTAAGTATCTTCCACGACTCTACCGGCTTTATGTTTACAGTTGTAGAATGCTTCAATCTATTCCAACGCTTCCACTCAATCTAGTCGATTTCTCTGTCATAGATTGTGAATCTCTTGAGACAGTGTTGAGTTCAATGGAAGAACCATATGACAAACCCAATCCTTGTACTGTTCTTCTCCGTAACTGCAAAAAATTGGATCCTCATTCGTATCATACAGTTTTGAACAATGCTATTGCTGGGATTGAACATGGACCAACTGGAGAAGATAATACCATTCAGTACCTGTTAGTGTTACCTCATATGCCTGGCAGAGAGTGTCCGTTCCATTACCGTTCTACACAAGTTTCATTCACTCTTGAGCTTCCTCCTAATTTGGTGGGTTTCGCCTATTACTTGGTTCTTACTCAAGGCTTTGTAGGAGAAGGTGCGCATTTTGGATGTGAGTGCTACTTGGACAGTAGTTCTGGTGAAAGTGAAAGGATCTGTATAACAAGATTCCCTAGAGCCGACATCTTCCAATATTGCGGGTGTTGTGGTAATGAGACTATAATCTACATGTGGTCAGATCATGTGGTTTTATGGTATGATCCAGTAACTTGCAAGGAGATAATGGAAGcagttgaaaaaataaaagccaTTAATGATAAGAACAGCACCGGTTACAATCCAAAGCTTACATTTAGCTTCTTTATAGATGAAAGTGTATATGATAACGTAGTGATACAAGAATGTGGGTTTCGCTggatatataaaaaagaaacagtTCCTCCAACAAGGAAATTAAAGCAACATGTCTTTGGAACTCCAATGCCAAGCCTAGAATTAGATGAAACAAAAGGCTTGAGGTATTTACTTGAATAA 3390 0.3596 MFMASSSSQTVTAVDLKKYDVFISFRGDDTRSGFTSHLHAALKRSYLETYIDYRIEKGNQVWTELVKAIKYSTLCLVVFSENYASSTWCLNELVEIMECHKNGQVVVPVFYQTDPSHVRKQTGSYGTALAKHKKQVGKNDNHKIQNWKNALTQAADLSGFPSTTSGTEFDLIEDIVRVVLRKLNHNYTHELTCNFILDGNYWTIRSSINEIDSTEVQTIGLWGMGGIGKTTLALAMFHKVSSKYEGSCFLENVTEVSTRHGINYTCNKLLSKLLREDVDIDTSKAIPSMIIRRLKHMKSFIVLDDVHTLELLQNLIGVEHSLLGAGSTVIVTTRDKHVLISGGIENIHQVKKMNSQNSLQLLSLNAFDRVLPKEGFMELSERAIDYAEGNPLALKVLGSFLRYKSEIEWNCALAKLKEIPNAKIDRVLRWSYNELDDMEKKIFLDITLFFKGYNLDRVTKILNGCGFYADIGISRLLDMALIRVDFQNCIQMHNLIQEMGKQIVLEECPKNPGQRSRLCDPNEVCDVLKNNRGTEIVEAIVLDATKYTNINLSPKSFEKMVNLRLLVFRDPHGIRTVSLPHGLDFLPENLRFFSWDGYPLKSLPSTFSPKMLVELSMQHSCAEKLWNGEMNLPNLEILDLSGSKKLIKCPNVSGSPNLKGITLDYCENLPEVDSSIFLLQKLERLSLWRCISLKSLSSNTCSPALIELYAWNCINLQEFSIPFASTDGLLLCLTKAWNGNELPSSILNKTNLKSFYFPLIECLVDLPENFAHRISLNTPPNGDHDPSITLHKVLSSPAFITLRHLILCNIPTLSEIPDNISLLSSLETLELYYIGIRSLPETIKYLPRLYRLYVYSCRMLQSIPTLPLNLVDFSVIDCESLETVLSSMEEPYDKPNPCTVLLRNCKKLDPHSYHTVLNNAIAGIEHGPTGEDNTIQYLLVLPHMPGRECPFHYRSTQVSFTLELPPNLVGFAYYLVLTQGFVGEGAHFGCECYLDSSSGESERICITRFPRADIFQYCGCCGNETIIYMWSDHVVLWYDPVTCKEIMEAVEKIKAINDKNSTGYNPKLTFSFFIDESVYDNVVIQECGFRWIYKKETVPPTRKLKQHVFGTPMPSLELDETKGLRYLLE 1129
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tsu08g00485 1129 Coils Coil 1128 1129 - -
Tsu08g00485 1129 PRINTS Disease resistance protein signature 218 233 - -
Tsu08g00485 1129 PRINTS Disease resistance protein signature 293 307 - -
Tsu08g00485 1129 PRINTS Disease resistance protein signature 630 646 - -
Tsu08g00485 1129 PRINTS Disease resistance protein signature 387 401 - -
Tsu08g00485 1129 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 184 446 IPR027417 -
Tsu08g00485 1129 SUPERFAMILY "Winged helix" DNA-binding domain 423 529 IPR036390 -
Tsu08g00485 1129 SUPERFAMILY Toll/Interleukin receptor TIR domain 17 160 IPR035897 -
Tsu08g00485 1129 Pfam NB-ARC domain 211 435 IPR002182 GO:0043531
Tsu08g00485 1129 Gene3D - 16 181 IPR035897 -
Tsu08g00485 1129 ProSiteProfiles TIR domain profile. 17 183 IPR000157 GO:0007165
Tsu08g00485 1129 Gene3D - 352 436 IPR042197 -
Tsu08g00485 1129 PANTHER RESISTANCE PROTEIN (TIR-NBS-LRR CLASS), PUTATIVE-RELATED 13 1008 - -
Tsu08g00485 1129 SMART till_3 18 157 IPR000157 GO:0007165
Tsu08g00485 1129 Pfam Leucine Rich Repeat 612 629 IPR011713 -
Tsu08g00485 1129 PANTHER LEUCINE-RICH REPEAT-CONTAINING PROTEIN 13 1008 IPR044974 GO:0006952
Tsu08g00485 1129 SUPERFAMILY L domain-like 541 909 - -
Tsu08g00485 1129 Pfam TIR domain 18 189 IPR000157 GO:0007165
Tsu08g00485 1129 Gene3D - 182 343 IPR027417 -
Tsu08g00485 1129 Gene3D Ribonuclease Inhibitor 736 917 IPR032675 -
Tsu08g00485 1129 Gene3D Ribonuclease Inhibitor 521 727 IPR032675 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tsu08g00485 Tsu-Chr8 4914012 4921140 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tsu08g00485 17 867 WRKY Transcription Factor Family AT4G12020 31.228 3.89e-89 314
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tsu08g00485 - - mtr:MTR_8g018480 1488.78