Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tsu08g00465 ATGGATGAAACACCTACAATCCTCCATGGAACAATTGAAGCTACCATCTTCAATACCTCACCTTACACATCCTTTTTCCCCTTCAATTGCATATGTAGAAAGGGAAAGCCTGCTTATGTAACCATAAAGATAGACAACAAAAAGGTTGCAAAAACAAGCAAAGAAAGAAACCGTATTTGGAACCAAACATTTCATATTCAATGTGCTCATCCAACTAATTCAATTATCACAATTacattaaaaacatcaaattccATATTAGGAAAATATCATATCAAGGCCCAACAACTTTTAAATGAAGGAAGTAATTTAATCAATGGATTATTCCCTCTCCTCATGGAAAATGAAAAACCAAACCCAAAacttaaattgaaatttatattaTGGTTTAAGCCTGCAAGATTGGAACAAAGTTTATCAAAGGTGCTAAGCAATAGGGAATTTCAAGGGCTAAAGGATGCAACATTTCCACTAAGGTCTAATTGTCAAGTCAAACTTTATCATGATGCTCATCATTGTTCTACCTTCCAACCTCCCTTTGATCCATGTGGTACTCCAAAAAATCTATGGGAGGATGTGTATAAAGCCATTGAAGGTGCAAAGTATATAGTTTATATTGCAGCTTGGTCCCTCAATCCCATGATGGTTTTGGTAAGAGATCCTCATACAGAAATCCAACATGCAAGAGGAATGAGTTTAGGTGAGCTATTGAAAAAGAAAGCAGATGAAGGAGTGGCTGTGAGAGTTATGCTTTGGGATGATGAAACAGCATTGCCCTTAATTAAGAACAAAGGTCTAATGAACACACATGATGAAGATGCTCTTACATATTTCAACCATACAAAAGTAATATGCAAACAATGTCCTAGATTACACCACAAGTTCCCAACACTATTTTCTCACCATCAAAAAACTATAACAGTTGACACCAAAGTACTCAAATCTGATAATGATAGACAAATTATGAGCTTTGTTGGTGGATTAGATTTGTGTGATGGTAGATATGATACAGAACAACATTCATTGTTTCAAACACTTATTAAGGAATCACATTGTTATGATTTTTACCAACCAAACATTATAGGAGCTAACCTTAACAAAGGAGGACCAAGAATTCCTTGGCATGATTCTCATGCTTGTGTTATTGGAGAAGCTGCTTGGGATGTGTTAACAAACTTTGAGCAAAGATGGACAAAACAATGTGACCCTTCTCTTTTAGTCCCTTCTAGCACCTTGATGAAACTTGTTCCTCAAGCAAACTCAAACACTTCAATAGAAAATAATTGGAAAGTTCAAGTTTATAGGTCAATTGATCATGCTTCTGTTGATGATTTGTGTGGAAATTTCAATGCAGAGAGAACCGTCCATGAAGCTTATGTTGAAGCAATTAGACATGCTGAGAAGTTTATATACATTGAAAACCAATACTTTATTGGAGGATGTCAAATGTGGGAAAAAGATAAGAATATTGGTTGCACAAATTTGATTCCTATTGAAATTGCATTAAAAGTGGTAAATATATTGTATTGGACAAGAGAAACTGTGGCAATGATGTATAGGTTGATTGGTGAAGCAATGAAAGAAAGTGGTGAAATAGGACATCCAAGAGATTACTTGAATTTCTTTTGTCTTGCAAATAGAGAGCTTAAGGGAAAAGGAGAGTATCTTCCTTTAGATTCTCCTCATCCTCAAACAGATTATTGGAATGCACAGAAAAATAGAAGATTCATGGTTTATGTTCATTCTAAGCTCATGATAGTGGATGACATGTACATATTAATAGGTTCAGCTAACATGAACCAAAGATCAATGGATGGGAAAAGGGACACAGAGATTGCAATAGGATGCTTCCAAATTCAAAATGAAGTTGAGAAACAAATGAACCTTAGTGATGTTCATGCATATAGAATGTCACTATGGTATGAGCACACAAATAGTTTCAATGAATTATTCTTAGAGCCACAAAATTTGGaatgtgtgaaaatgatgtgtTCAATTGGTGATCAAATGTGGGAAATTTATAGCAATGAAGACATTGTTGACATGGAAGGTGTGCACCTTGTTAGTTACCCTATGAAGGTAACACAAGAAGGGTATGTGAAAGATTTGAGTAATGGAGTTTATTTTCCAGATACAAATTCTCTAGTGAAGGGGAAGAGATCTACATTGTTGCCCCCTAACTTGACTACTTag 2193 0.3443 MDETPTILHGTIEATIFNTSPYTSFFPFNCICRKGKPAYVTIKIDNKKVAKTSKERNRIWNQTFHIQCAHPTNSIITITLKTSNSILGKYHIKAQQLLNEGSNLINGLFPLLMENEKPNPKLKLKFILWFKPARLEQSLSKVLSNREFQGLKDATFPLRSNCQVKLYHDAHHCSTFQPPFDPCGTPKNLWEDVYKAIEGAKYIVYIAAWSLNPMMVLVRDPHTEIQHARGMSLGELLKKKADEGVAVRVMLWDDETALPLIKNKGLMNTHDEDALTYFNHTKVICKQCPRLHHKFPTLFSHHQKTITVDTKVLKSDNDRQIMSFVGGLDLCDGRYDTEQHSLFQTLIKESHCYDFYQPNIIGANLNKGGPRIPWHDSHACVIGEAAWDVLTNFEQRWTKQCDPSLLVPSSTLMKLVPQANSNTSIENNWKVQVYRSIDHASVDDLCGNFNAERTVHEAYVEAIRHAEKFIYIENQYFIGGCQMWEKDKNIGCTNLIPIEIALKVVNILYWTRETVAMMYRLIGEAMKESGEIGHPRDYLNFFCLANRELKGKGEYLPLDSPHPQTDYWNAQKNRRFMVYVHSKLMIVDDMYILIGSANMNQRSMDGKRDTEIAIGCFQIQNEVEKQMNLSDVHAYRMSLWYEHTNSFNELFLEPQNLECVKMMCSIGDQMWEIYSNEDIVDMEGVHLVSYPMKVTQEGYVKDLSNGVYFPDTNSLVKGKRSTLLPPNLTT 730
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tsu08g00465 730 Pfam Phospholipase D C terminal 649 719 IPR024632 -
Tsu08g00465 730 SUPERFAMILY Phospholipase D/nuclease 151 410 - -
Tsu08g00465 730 SUPERFAMILY Phospholipase D/nuclease 429 658 - -
Tsu08g00465 730 Pfam C2 domain 38 99 IPR000008 -
Tsu08g00465 730 ProSiteProfiles Phospholipase D phosphodiesterase active site profile. 297 334 IPR001736 GO:0003824
Tsu08g00465 730 Gene3D Endonuclease Chain A 447 630 - -
Tsu08g00465 730 SUPERFAMILY C2 domain (Calcium/lipid-binding domain, CaLB) 37 126 IPR035892 -
Tsu08g00465 730 PANTHER PHOSPHOLIPASE D 5 506 IPR015679 -
Tsu08g00465 730 PANTHER PHOSPHOLIPASE D 505 730 IPR015679 -
Tsu08g00465 730 PANTHER PHOSPHOLIPASE D ALPHA 5 506 - -
Tsu08g00465 730 PANTHER PHOSPHOLIPASE D ALPHA 505 730 - -
Tsu08g00465 730 ProSiteProfiles Phospholipase D phosphodiesterase active site profile. 576 603 IPR001736 GO:0003824
Tsu08g00465 730 Pfam Phospholipase D Active site motif 298 334 IPR001736 GO:0003824
Tsu08g00465 730 Pfam Phospholipase D Active site motif 579 603 IPR001736 GO:0003824
Tsu08g00465 730 Gene3D C2 domain 33 130 IPR035892 -
Tsu08g00465 730 Gene3D Endonuclease Chain A 169 431 - -
Tsu08g00465 730 SMART pld_4 297 334 IPR001736 GO:0003824
Tsu08g00465 730 SMART pld_4 576 603 IPR001736 GO:0003824
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tsu08g00465 Tsu-Chr8 4621827 4626008 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tsu08g00465 30 730 Phospholipase D Gene Family (Wang group) AT1G55180 57.838 0.0 869
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tsu08g00465 K01115 - gmx:100812642 1185.24
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Tsu08g00465 08 4621827 4626008 Tsu08g00465 08 4621827 4626008 ECH
Tsu02g05382 02 62393646 62397207 Tsu08g00465 08 4621827 4626008 PCT