Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tsu08g00460 ATGAGTCGAGAGGTGCAGAAGAGGGGGAAACAAGAGAAAGGTTGTGATGGTGCTATGAAGGTTATTGTTGCTGTTAAGGCATCATCAAAGGAAATTCCAAAGACTGCTCTTGTTTGGTCATTGACTCATGTTGTTCAACCTGGTGATTGCATTACACTTCTAGTGGTTGTTCCTTCACAAACTTCAGGTAGAAAATGGGGTTTTCCTAGATTTGCTGGTGATTGTGCCAGTGGTATGAAGAAGTGTCCCCCAGGAACAATTTTAGAGCAGAAGAGTGATATCACTGATTCTTGCTCTCAGATGATTCTTCAGCTCCATGATGTCTATGATCCAAATAAGATAAATGTCAGAATTAAAATTGTTTCCGGATCACCATGTGGATCGGTTGCTGCAGAAGCCAAGAAAGGACAAGCCAGTTGGGTTGTATTAGACAAACATCTCAAACCTGAGGAAAAGAAATGCATGGAAGAGCTGCAGTGTAACATTGTTGTTATGAAGCGTGCTCAACCGAAAGTGCTTCGCTTGAACTTGATTGGACCACAAAAGAACGAAGTTGAAGAAGCAGGTACATCACCTTCTGTGCAAGGCGATATACTTGAAAAGCATACCAAAAACAATATTGATTCTTTAGTAGATTCTATCAAAGGACCGAATGTTACTCCAACTAGCAGCCCTGAGCTAGGGACACCATTCACTATTACTACTGAAGCCGGTACTTCATCAGCTTCAAGCTCTGATCCCGGAACTTCACCGTTCTTTATATCAGAGATGAATAGTGAGTCAAAGAAAGAGGAAACCATTAAGGAAAGTCAAGAACTTTGTGATACTAATTCCGACACAGAAAGTGAAAGTCTTTCCACATCTTCGGCTAGCTTTAGATACCAACCTTGGATCACAGAATTGCTTTTACATCAACAATCATCTCAACGCAATGAAGAAAAATCAGAGACGTATCATGGTATGCCTCAAGCAACTACAACCAAAGCTTTGCTGGAAAAGTATTCTAGGCTTGATAGAGGAGCTGGAATTGAAATGTCGGCAGCATATAGAAATGACTCTGATTTTAGTGGTAATTTAAGAGAAGCAATAGCATTATCGGGAAATGCTCCGCTTGGTCCACCTCCGTTGTGTTCAATATGTCAACACAAGGCACCTGTATTTGGAAAACCTCCAAGGTGGTTCAGCTATGCTGAGTTGGAACTCGCCACCGGTGGATTTTCACAAGCTAACTTCTTGGCGGAAGGAGGGTTTGGATCGGTTCATCGAGGGGTTCTACCAGAAGGACAAGTCATTGCTGTCAAGCAACATAAATTGGCTAGTTCTCAAGGTGATGTTGAGTTTTGCTCCGAGGTAGAAGTCTTGAGTTGTGCTCAGCACCGAAATGTTGTTATGCTTATTGGATTCTGTATAGAGGATAAGAGAAGGCTACTGGTTTACGAGTACATATGCAACGGATCATTGGATTCACATTTATATGGGCGACAAAGGGATCCATTAGAATGGTCCGCACGACAGAAAATTGCTGTTGGAGCTGCTCGTGGGTTAAGGTATCTTCACGAAGAGTGCAGAGTTGGTTGTATCATCCACCGTGACATGAGGCCAAACAACATTCTCATAACTCATGATTTTGAACCTCTGGTTGGTGATTTTGGACTGGCAAGGTGGCAGCCTGATGGAGACATGGGTGTGGATACTAGAGTAATTGGAACATTTGGCTATTTGGCTCCTGAATATGCTCAAAGTGGCCAAATCACTGAAAAAGCTGATGTTTATTCCTTTGGGGTGGTACTGGTGGAGCTTGTTACTGGTAGAAAAGCTGTTGATCTCACTAGGCCCAAGGGACAACAGTGCCTTGCTGAGTGGGCACGACCACTGTTAGAAGAATACGCCATTGACGAACTGATTGACCCGAGGTTGGGAGGTCACTATTTAGAACATGAAGTCTATTGCATGCTGCATGCTGCTTCATTATGCATAAGGAGAGATCCTCATTCTAGACCACGCATGTCACAGGTTCTCCGAATTCTAGAGGGTGACATGGTGGTGGACACAAATTACAATTCGACTCCAGGCTATGATGTTGGAAACAGGAGTGGTCGCATTTGGTCTGAGCCACTGCAGAGGCAGCACCAATACAGTGGTCCCCTCTTAGAAGATTCATTGGAGTCATCATTCAGTGGAAAGCTATCTATTGACAAGTACAAGCCTGCTTCTTATTGGGATAAGAGTAGGGACAAAACTAAAAGAGCATCATGTGAAGATGATATTTGA 2271 0.4315 MSREVQKRGKQEKGCDGAMKVIVAVKASSKEIPKTALVWSLTHVVQPGDCITLLVVVPSQTSGRKWGFPRFAGDCASGMKKCPPGTILEQKSDITDSCSQMILQLHDVYDPNKINVRIKIVSGSPCGSVAAEAKKGQASWVVLDKHLKPEEKKCMEELQCNIVVMKRAQPKVLRLNLIGPQKNEVEEAGTSPSVQGDILEKHTKNNIDSLVDSIKGPNVTPTSSPELGTPFTITTEAGTSSASSSDPGTSPFFISEMNSESKKEETIKESQELCDTNSDTESESLSTSSASFRYQPWITELLLHQQSSQRNEEKSETYHGMPQATTTKALLEKYSRLDRGAGIEMSAAYRNDSDFSGNLREAIALSGNAPLGPPPLCSICQHKAPVFGKPPRWFSYAELELATGGFSQANFLAEGGFGSVHRGVLPEGQVIAVKQHKLASSQGDVEFCSEVEVLSCAQHRNVVMLIGFCIEDKRRLLVYEYICNGSLDSHLYGRQRDPLEWSARQKIAVGAARGLRYLHEECRVGCIIHRDMRPNNILITHDFEPLVGDFGLARWQPDGDMGVDTRVIGTFGYLAPEYAQSGQITEKADVYSFGVVLVELVTGRKAVDLTRPKGQQCLAEWARPLLEEYAIDELIDPRLGGHYLEHEVYCMLHAASLCIRRDPHSRPRMSQVLRILEGDMVVDTNYNSTPGYDVGNRSGRIWSEPLQRQHQYSGPLLEDSLESSFSGKLSIDKYKPASYWDKSRDKTKRASCEDDI 756
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tsu08g00460 756 Pfam Protein tyrosine and serine/threonine kinase 410 675 IPR001245 GO:0004672|GO:0006468
Tsu08g00460 756 Gene3D Transferase(Phosphotransferase) domain 1 482 689 - -
Tsu08g00460 756 ProSiteProfiles Protein kinase domain profile. 406 682 IPR000719 GO:0004672|GO:0005524|GO:0006468
Tsu08g00460 756 PANTHER OS01G0253100 PROTEIN 16 711 IPR045271 GO:0004714|GO:0006468
Tsu08g00460 756 SUPERFAMILY Protein kinase-like (PK-like) 390 682 IPR011009 -
Tsu08g00460 756 ProSitePatterns Tyrosine protein kinases specific active-site signature. 527 539 IPR008266 GO:0004672|GO:0006468
Tsu08g00460 756 MobiDBLite consensus disorder prediction 257 287 - -
Tsu08g00460 756 CDD STKc_IRAK 412 678 - -
Tsu08g00460 756 PANTHER KINASE WITH ADENINE NUCLEOTIDE ALPHA HYDROLASES-LIKE DOMAIN-CONTAINING PROTEIN 16 711 - -
Tsu08g00460 756 MobiDBLite consensus disorder prediction 258 275 - -
Tsu08g00460 756 Gene3D Phosphorylase Kinase; domain 1 378 481 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tsu08g00460 Tsu-Chr8 4597279 4603298 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tsu08g00460 345 672 Trihelix Transcription Factor Family AT1G68690 50.301 2.83e-103 330
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_PERK-2 Tsu08g00460 PK_Tyr_Ser-Thr 1.5e-40 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tsu08g00460 - - cam:101503019 1355.5
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Tsu08g00460 08 4597279 4603298 Tsu08g00460 08 4597279 4603298 ECH
Tsu02g05387 02 62418340 62423344 Tsu08g00460 08 4597279 4603298 PCT