Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tsu08g00458 ATGGGAAAAAGGAACGTTTTTGAAGGAATTACAGGTTTGTTTGCTGCAACAGGAGCATCAAAGAACATCCTAATTCTTGCTCCAATCATGGTTAACTTTCAGAATTCAATGGGTGATTTCTCATTGATTTGTCTAAAAGATTTTGATTTCACTTCATTATGTTCTCTAAGGAGCGCTATAGACACAGTCAATATACTTTTTGCCTGTGCCTACTACACGTCTTTGTTTATCAGTTTAATCAGAGAAACTTCTGCAAATAGGAGCCACAAAAGAAGTTGGATTTTCAAACTTGTTTCAATCTGTTCTGCCCTTGTTAGCATTACTTTTTTGGTTATTGGCTTGTGGAATCTCATAGACAAAACTGGTAACTCTAAGGAGCTGAGCTGGTTAGCTTGTAGTATCAAAGAAATCATTTGGATTTCTTTAACAGTTTCTTTGCTTGTTCAGAGAGTTAAATGGATTAAAATACTAAACTCTGTCTGGTGGGCATCTTCCAGTGTATTAGTTTCAGCTCTCAACATTGAGATTCTGTTCAAAGGTCATGATGCCTTTGAAACTTTTGATATCATAATATGGCTTTTACACTTTCTTCTACTATTATGTGCATTCAAAAATCTTGGTGATTTAGGAACTCATAGTGCCCAAGAATGTTTGTCTGAACCATTATTAGctcagaaaattgaaactaaaCAAACAGGACTAGCTCATGCTACTTTTCTTAGCAAGTTGGTTTTCTCTTGGGTTAACTCTTTACTCAGTTTAGGTTACTCAAAACCACTAGCTCTTGAAGACATACCTTCCCTTGTTTCTGAAGATGAAGCAAGCACTGCCTATCAAAACTTTGTGCATGCATGGGAATCCCTTGAAAAGGAGAGGACTAAGAACAGTACAAAGAGCTTGGTTCTTTGGTCTGTAGTTAAAACTTACTTTAAAGAAAACACATTAATAGCATTCTATGCACTACTCAGAACTATTTCTGTTGTAGTTTCACCTCTAATACTCTATGCTTTTGTTAACTACTCAAAAAGAACTGAGGCTAATCTCAAAGAAGGTTTTTCCATAATTGGTTTTCTAATTCTAGCCAAATTGGTAGAGTCTCTGTCTCAAAGACATTGGTTTTTTGACTCAAGGAGGTCAGGAATGAAAATTAGATCAGCTCTGATGGTAGCAGTTTATCAAAAGCAGCTAAAGCTTTCTAGCTCAGCAAGGACAAGACACTCGGCAGGCGAAATTGTGAATTACATTGCAGTTGATGCATACAAAATGGGAGAATTCCCATGGTGGTTTCATATAACATGGACTTCTGTATTGCAACTTGTCCTGTCTATTGCTATCCTTTTTGGTGTTGTTGGTATTGGTGCTCTTCCTGGTTTAGTCCCTCTTCTTATATGTGGACTTCTCAATGTACCATTTGCAAGGATCCTACAAAATTGTCAGTCACAGTTTATGACTGCACAGGACGAACGTCTTCGATCAACTTCAGAAATTCTAAATAGTATGAAGATCATTAAGTTACAATCATGGGAAGAAAAATTTAAGAACTTAGTCGAGTCGTTACGTGATAAAGAGTTTGTGTGGTTGTCTAAAGCACAGATCCTGAAAGCTTCTAGttcatttcttttttggttGTCTCCTACAGTTATATCTGCTGTTGTTTTCATTGGATGTGCCGTTTCCAAGAGTGCACCATTGAATGCTGAAACCATTTTCACAGTTCTTGCAACATTGAAGAACATGGGAGATCTAGTTAAAATGATCCCAGAGGCTCTATCCATTATGATTCAAGTTAAGGTCTCCTTTGATCGTCTTAATAAATTTTTGCTTGATGAAGAactaaaaaatgatgaaaaaagtGAAAGAAACATAAAGCAATGTTCAGCTAATGCTGTGGAAATTCAAGCTGGCAACTTCACTTGGGATCATGAATCTGTGTCCGCCGCTTTAACAGATGTTAACTTAGAAATAAAATGGGGACAGAAAATAGCAGTTTGTGGACCAGTTGGAGCTGGAAAATCATCTCTTTTGTATGCAATACTTGGAGAGATTCCCAAGATTCAAGGAACTGTTAATGTAGGTGGCACCCTTGCCTATGTTTCTCAATCCTCTTGGATACAAAGTGGAACAGTTCGAGATAATATACTTTTTGGCAAGCCAATGGATAAAACAAGATATGAGAATGCTATTAAAGTGTGTGCTTTGGATGAGGATATCAATGATTTTAGTCACGGGGATCTTACAGAAATAGGTCAGAGAGGGATTAACCTAAGTGGAGGACAAAAGCAAAGGATTCAACTAGCTCGAGCAGTCTACAGAGATGCTGATATCTATCTCCTCGACGACCCTTTCAGTGCAGTCGACGCGCACACTGCTGCTATTCTGTTCAAGGACTGCGTTATGACTGCTCTAAGAGAGAAAACAATCATTCTTGTGACACATCAAGTGGAGTTTCTCCCAGAAGTTGATACAATATTGGTAATGGAGGATGGAAAAGTTATTCAATCAGGCAGTTATGAGAATCTGCTGACAGCTGGGACAGCCTTTGAACAACTTGTGAACGCCCATAAAGACACAGTTACTGAGTGGAATCAagataacaaaaacaaaagaggtTCCGAAAATGTTGTTTTGGCTAATCCACAAGAGACACGTAGTTTTCATCTCACTAAAAATCAAAGCAAGAGGGAGAGTTCTGCCAGAGGTCAATTTGGGGTACAACTTACaaaagaggaagaaaaagaGATTGGCGATGTAGGCTTGAAACCATTCTGGGATTATATTTCTTATTCCAGGGGGTCATTCATGTTGTGTTTTATCGTGTTAGCACAATTTGCTTTTATGGCTTTGCAGACTGCATCAACCTTTTGGCTTGCTATTGCCATTGAAATTCCAAAAGTAACTAGTGCCACATTGATTGGAGTTTATTCCTTAATTTCTTGTGCTGGTGTTATGTTTGTATATCTAAGGTCTTACTTGAATGCACATCTCGGATTAAAAGCTTCTACTGCATACTTCTCAAGCTTCACTACAGCTATCTTCAATTCTCCTATGATGTTCTTTGATTCGACCCCTGTAGGAAGAATTTTAACCCGAGTAAGATTTGTTTATTCCCAATGGGGAAAAATCTATATATCTTCCTTCTATTCATTCATTACTATCTAA 3159 0.3682 MGKRNVFEGITGLFAATGASKNILILAPIMVNFQNSMGDFSLICLKDFDFTSLCSLRSAIDTVNILFACAYYTSLFISLIRETSANRSHKRSWIFKLVSICSALVSITFLVIGLWNLIDKTGNSKELSWLACSIKEIIWISLTVSLLVQRVKWIKILNSVWWASSSVLVSALNIEILFKGHDAFETFDIIIWLLHFLLLLCAFKNLGDLGTHSAQECLSEPLLAQKIETKQTGLAHATFLSKLVFSWVNSLLSLGYSKPLALEDIPSLVSEDEASTAYQNFVHAWESLEKERTKNSTKSLVLWSVVKTYFKENTLIAFYALLRTISVVVSPLILYAFVNYSKRTEANLKEGFSIIGFLILAKLVESLSQRHWFFDSRRSGMKIRSALMVAVYQKQLKLSSSARTRHSAGEIVNYIAVDAYKMGEFPWWFHITWTSVLQLVLSIAILFGVVGIGALPGLVPLLICGLLNVPFARILQNCQSQFMTAQDERLRSTSEILNSMKIIKLQSWEEKFKNLVESLRDKEFVWLSKAQILKASSSFLFWLSPTVISAVVFIGCAVSKSAPLNAETIFTVLATLKNMGDLVKMIPEALSIMIQVKVSFDRLNKFLLDEELKNDEKSERNIKQCSANAVEIQAGNFTWDHESVSAALTDVNLEIKWGQKIAVCGPVGAGKSSLLYAILGEIPKIQGTVNVGGTLAYVSQSSWIQSGTVRDNILFGKPMDKTRYENAIKVCALDEDINDFSHGDLTEIGQRGINLSGGQKQRIQLARAVYRDADIYLLDDPFSAVDAHTAAILFKDCVMTALREKTIILVTHQVEFLPEVDTILVMEDGKVIQSGSYENLLTAGTAFEQLVNAHKDTVTEWNQDNKNKRGSENVVLANPQETRSFHLTKNQSKRESSARGQFGVQLTKEEEKEIGDVGLKPFWDYISYSRGSFMLCFIVLAQFAFMALQTASTFWLAIAIEIPKVTSATLIGVYSLISCAGVMFVYLRSYLNAHLGLKASTAYFSSFTTAIFNSPMMFFDSTPVGRILTRVRFVYSQWGKIYISSFYSFITI 1052
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tsu08g00458 1052 CDD ABCC_MRP_domain1 630 830 - -
Tsu08g00458 1052 ProSiteProfiles ABC transporter integral membrane type-1 fused domain profile. 315 595 IPR011527 GO:0005524|GO:0016021|GO:0055085|GO:0140359
Tsu08g00458 1052 Pfam ABC transporter 648 782 IPR003439 GO:0005524
Tsu08g00458 1052 CDD ABC_6TM_ABCC_D1 315 603 IPR044746 GO:0140359
Tsu08g00458 1052 Pfam ABC transporter transmembrane region 935 1031 IPR011527 GO:0005524|GO:0016021|GO:0055085|GO:0140359
Tsu08g00458 1052 Pfam ABC transporter transmembrane region 328 575 IPR011527 GO:0005524|GO:0016021|GO:0055085|GO:0140359
Tsu08g00458 1052 ProSiteProfiles ABC transporter integral membrane type-1 fused domain profile. 937 1031 IPR011527 GO:0005524|GO:0016021|GO:0055085|GO:0140359
Tsu08g00458 1052 Gene3D ABC transporter type 1, transmembrane domain 877 1050 IPR036640 GO:0005524|GO:0016021
Tsu08g00458 1052 Gene3D - 639 876 IPR027417 -
Tsu08g00458 1052 SUPERFAMILY ABC transporter transmembrane region 920 1032 IPR036640 GO:0005524|GO:0016021
Tsu08g00458 1052 SMART AAA_5 657 830 IPR003593 -
Tsu08g00458 1052 ProSitePatterns ABC transporters family signature. 755 769 IPR017871 GO:0005524
Tsu08g00458 1052 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 628 853 IPR027417 -
Tsu08g00458 1052 ProSiteProfiles ATP-binding cassette, ABC transporter-type domain profile. 632 853 IPR003439 GO:0005524
Tsu08g00458 1052 PANTHER ATP-BINDING CASSETTE SUB-FAMILY C 90 1031 - -
Tsu08g00458 1052 Gene3D ABC transporter type 1, transmembrane domain 283 612 IPR036640 GO:0005524|GO:0016021
Tsu08g00458 1052 PANTHER NHPM BACTERIOCIN SYSTEM ABC TRANSPORTER, PEPTIDASE/ATP-BINDING PROTEIN-RELATED 90 1031 - -
Tsu08g00458 1052 SUPERFAMILY ABC transporter transmembrane region 302 609 IPR036640 GO:0005524|GO:0016021
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tsu08g00458 Tsu-Chr8 4509769 4517322 Dispersed/Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tsu08g00458 607 897 Calmodulin-binding Proteins AT2G36910 25.000 4.39e-22 101
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tsu08g00458 - - gmx:100784827 1469.52