Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tsu08g00455 ATGGCTTACTTTTGGAACTCAATTGGTGAAAATTCATGGATTTGTTTGAAGAATTTTGATTTCAATTCTTTATGTTCACAAAGGAGCTTAATAGACACAATCAACATactctttttttgtgtgtaCTTCATATCTTTGATTATCACtataatcagaaaaaaatctaCAAATGAAAACCACAGAAAAAGTTGGATTTTCCTCATTGTTTCAATTTGTTGTGGTGTTATTAGCATTGCATTTTTCAGTATTGGATTGTGGAATCTCATAGCAAGAACTGATTACTCTGAGAAATTGAATTGGTTAACTTGCATTATCAAAGGATTTATTTGGATTTCTTTTGCTGTTTCTTTGATTGTTCAAAGAGTCAAATGGATTAGAATATTAAACTCTATATGGTGGTTATGTTCTTGTGTATTGGTTTCAGCTTTCAACATTGAAATTCTGATACAAAATCATGCAATTGAAGCTTTAGATATTGTACAGTGGCTTgtacattttcttcttttgtatTGTGCCTACAAAAATGTTGGTTATTTAGGAAATAATAGTGCTCAAGAAGGTTTATCTGAGCCACTATTAggtcaaaaaattgaaactaatcAAACAGGATTAAATCATGCTAATTTCTTCAGCAAGTTGATATTCTGTTGGGTTAATTCTTTAATCAGTTTAGGTTACTCGAAGCCACTCGATCTTGAAGATATACCATCTCTTGTTTCTGAAGATGAATCAAATATGGCTTATCAAAAATTTGTTGATGCTTGGGAATCACTTGTTAGAGAGAGGACTAAGAACAATACAAAGAGTTTGGTTCTTTGGTCTATAGTTAGAATTTacttaaaagaaaatttattaatagCATTTTATGCATTAATCAGAACTATTTCTGTTGTTGTTTCACCTTTAATATTGTATGCTTTTGTTAGCTACTCGAATAGAACCGAGGAAGATCTTAGAAAAGGTCTTTCCATAGTTGGTTTTTTGATTGTCACCAAGGTGTTCGAGTCTTTGTCGCAAAGACATTGGTTTTTTAACTCGAGGAGGTCAGGAATGAAAATGAGATCAGCTTTGATGGTGGCAGTTTATCGAAAGCAGTTAAAGCTTTCTAGCTCGGCAAGGACAAGACACTCGGCTGGCGAAATTGTGAATTACATTGCAGTTGATGCATATAGAATGGGAGAATTTCCATGGTGGTTTCATATAACATGGACTTGTGCATTGCAACTTGTTCTTTCCATTGGTGTTCTTTTCGGTGTTGTTGGTATCGGTGCTCTTCCTGGTTTAGTACCTCTTGCTATATGTGGACTTCTCAATGTACCATTTGCAAGGATCATACAAAATTGTCAGTCACAATTTATGATTGCACAGGACGAACGTCTTCGATCGACTTCAGAGATTCTAAATAGTATGAAGATTATTAAGTTACAATCATGGGAAGAAAAATTCAAGAACTTGGTTGAGTCGCTACGCGATAAAGAGTTTGTATGGTTATCTAAGACACAGATACTGAAAGCTACTAACTCATTTCTTTATTGGATGTCTCCTACAGTTGTTTCTGCTGTTGTTTTCCTTGGATGTGTTGTTACCAAGAGTGCACCATTGAATGCTGAAACCATTTTCACAATTCTCGCAACACTGAGGAACATGGGAGAACCTGTTAGAATGTTCCCTGAGGCTCTATCTATTATGATTCAAGTTAAGGTTTCGTTTGATCGTCTTAATAAGTTTTTTCTTGATGAAGAACTAAACAATGATGATAGTGAAAGAAACTTACAACAATGTTCGGTTAATGCTGTGGAAATTCAAGATGGCAACTTCATTTGGGATCATGAATCTGTCTCTCCAACTTTAAAAGATGTGAATCTAGAAATCAAACGGGGGCAGAAAATTGCTGTTTGTGGACCTGTTGGAGCTGGAAAATCGTCACTTTTGTATGCAATACTTGGAGAGATTCCTAAGATTTCAGGAACTGTTAATGTCGATGGCACACTAGCCTATGTCTCTCAATCTTCATGGATACAAAGTGGAACAGTTCAAGAAAATATACTCTTTGGCAAGCCAATGGATACAACAAGATACGAGAAAGCAATTAAAGCATGTGCCTTGGATAAGGATATCAATGATTTTAGCCATGGTGATCTTACAGAAATTGGTCAAAGAGGGATCAACATGAGTGGAGGACAAAAGCAAAGGATTCAACTGGCTAGAGCAGTCTACAATGATGCTGATATATATCTCCTTGATGATCCTTTCAGTGCAGTTGATGCACATACAGCTTCAATACTATTCAATGATTGTGTCATGACTGCTCTAAGAGAGAAAACAGTCATTCTAGTTACTCATCAAGTGGAGTTTCTCTCAGATGTTGATACTATCTTGGTAATGGAAGATGGAAAAATTATTCAATCAGGTAGTTATGAGAATCTCCTTACAGCTGGAACAGCCTTTGAACTACTTGTGAGTGCTCATAAAGACACAATTACTGACTTGAATCAAGATACTGATAATAAAAAAGGTTCTGAAAATGAGGTTTTGACTAAAAATCAAAGTGAGGGAGAGATTTCTAGTATCAAGGGACCAATTGGTACACAGCTTACACAAGAGGAAGAAAAGGCAATTGGTAATGTTGGATGGAAGCCATTCTGggattatattaattattccaAAGGAACATTCATGCTGTGTATGGTCGTTTTAGCACAATCTGTTTTTTTGGGTTTCCAGACTGCCTCAACATTTTGGCTTGCTATAGCCATTGAAATTCCAAAAGTAACTAATGTCACCTTGATTGGAGTTTATGCAATGATTTCTTTTGCTAGTGCTGCTTTTGTATATGTAAGATCTTACTTGACTGCACTTTTGGGATTAAAAGCTTCTACCGCTTTCTTCTCAAGCTTCACTAAAGCTATCTTCAATGCTCCGATGCTTTTCTTTGATTCAACTCCTGTAGGAAGAATTTTAACTAGAGCTTCATCAGATTTGAGTATTTTGGACTTTGATATACCTTATTCCATCACCTTTGTAATATCTATTGCAATTGAAATTTTGGTGATAATTTGTGTAATGGTTTCAGTCACATGGCAAGTTCTCATTGTTGCTGTTCCTGCAATGGTTGCATCAATATGTGTTCAGCAATATTATCAAGCCACTGCAAGTGAACTAATACGGATCAATGGAACAACCAAAGCTCCAGTCATGAATTTTGCAGCTGAGACATCACTTGGAGTGGTTACTGTAAGAGCATTCAACATGGCAGACAGATTTTTTAAAACCTACTTAAAACTTGTGGACACAGACGCTTCGCTTTTCTTTCACTCTAATGTGACAATGGAATGGGTAGTTTTAAGGATTGAAGCACTTCAAAATGTGACTGTCATCACTGCAGCTTTGTTGCTTATTCTACTACCTCAGGGATATGTATCCCCagGCCTAGTGGGACTGTCACTCTCTTATGCTTTTACCTTGACAGGAGCCCAAATATTTTGGAGTAGATGGTTTTCCAACTTATCAAACTATATTATCTCTGTTGAAagaatcaaacaattcattcacATACCAGTTGAGCCGCCTGCTATTGTGGATAGTAACCGACCTCCATCTTCATGGCCGTCCAAGGGGAAGATTGATCTTCAAGGCTTAGAGATTCGATATCGCCCTAATGCTCCGTTAGTCCTCAAAGGAATCACTTGTACATTTAAAGAAGGGAGTAGGGTAGGAGTTGTTGGAAGGACTGGAAGTGGAAAAAGTACACTTATAAGTGCTTTGTTTCGCTTAGTTGAGCCTTCAAGAGGTGATATTCTCATTGATGGGATGAACATATGTTCAATGGGGTTGAAGGATTTGAGAATGAGGCTAAGCATCATCCCTCAAGAACCAACTCTTTTCAAGGGAAGCATTAGGACAAACCTGGATCCTCTAGGCCTGTACTCAGATGATGAAATATGGAAGGCTGTGGAAAAATGTCAGCTTAAGGAAACAATCAGCAAGCTACCAAATCTCCTGGACTCTTCAGTGAGTGATGAAGGTGGAAATTGGAGCTTAGGACAACGCCAATTGTTTTGTCTTGGAAGAGTTCTACTTAAGAGAAACAGAATTCTTGTTTTGGATGAAGCTACTGCCTCCATTGACTCTGCCACAGATGCCATTCTACAAAGAGTGATTAGACAAGAATTTGCAGAATGCACAGTTATAACTGTGGCTCATAGAGTTCCAACTGTTATAGACAGTGACATGGTCATGGTTTTATCTTATGGGAAATTGGTGGAATATGATGAGCCTTCAAAGCTAATGGACACAAAATCTTCATTTTCTAAGCTGGTAGCTGAATATTGGTCCAGTTGCAGGAAGAATTCCTTAACAAATATTAGCAGCCAGCAGCAATGA 4383 0.3616 MAYFWNSIGENSWICLKNFDFNSLCSQRSLIDTINILFFCVYFISLIITIIRKKSTNENHRKSWIFLIVSICCGVISIAFFSIGLWNLIARTDYSEKLNWLTCIIKGFIWISFAVSLIVQRVKWIRILNSIWWLCSCVLVSAFNIEILIQNHAIEALDIVQWLVHFLLLYCAYKNVGYLGNNSAQEGLSEPLLGQKIETNQTGLNHANFFSKLIFCWVNSLISLGYSKPLDLEDIPSLVSEDESNMAYQKFVDAWESLVRERTKNNTKSLVLWSIVRIYLKENLLIAFYALIRTISVVVSPLILYAFVSYSNRTEEDLRKGLSIVGFLIVTKVFESLSQRHWFFNSRRSGMKMRSALMVAVYRKQLKLSSSARTRHSAGEIVNYIAVDAYRMGEFPWWFHITWTCALQLVLSIGVLFGVVGIGALPGLVPLAICGLLNVPFARIIQNCQSQFMIAQDERLRSTSEILNSMKIIKLQSWEEKFKNLVESLRDKEFVWLSKTQILKATNSFLYWMSPTVVSAVVFLGCVVTKSAPLNAETIFTILATLRNMGEPVRMFPEALSIMIQVKVSFDRLNKFFLDEELNNDDSERNLQQCSVNAVEIQDGNFIWDHESVSPTLKDVNLEIKRGQKIAVCGPVGAGKSSLLYAILGEIPKISGTVNVDGTLAYVSQSSWIQSGTVQENILFGKPMDTTRYEKAIKACALDKDINDFSHGDLTEIGQRGINMSGGQKQRIQLARAVYNDADIYLLDDPFSAVDAHTASILFNDCVMTALREKTVILVTHQVEFLSDVDTILVMEDGKIIQSGSYENLLTAGTAFELLVSAHKDTITDLNQDTDNKKGSENEVLTKNQSEGEISSIKGPIGTQLTQEEEKAIGNVGWKPFWDYINYSKGTFMLCMVVLAQSVFLGFQTASTFWLAIAIEIPKVTNVTLIGVYAMISFASAAFVYVRSYLTALLGLKASTAFFSSFTKAIFNAPMLFFDSTPVGRILTRASSDLSILDFDIPYSITFVISIAIEILVIICVMVSVTWQVLIVAVPAMVASICVQQYYQATASELIRINGTTKAPVMNFAAETSLGVVTVRAFNMADRFFKTYLKLVDTDASLFFHSNVTMEWVVLRIEALQNVTVITAALLLILLPQGYVSPGLVGLSLSYAFTLTGAQIFWSRWFSNLSNYIISVERIKQFIHIPVEPPAIVDSNRPPSSWPSKGKIDLQGLEIRYRPNAPLVLKGITCTFKEGSRVGVVGRTGSGKSTLISALFRLVEPSRGDILIDGMNICSMGLKDLRMRLSIIPQEPTLFKGSIRTNLDPLGLYSDDEIWKAVEKCQLKETISKLPNLLDSSVSDEGGNWSLGQRQLFCLGRVLLKRNRILVLDEATASIDSATDAILQRVIRQEFAECTVITVAHRVPTVIDSDMVMVLSYGKLVEYDEPSKLMDTKSSFSKLVAEYWSSCRKNSLTNISSQQQ 1460
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tsu08g00455 1460 SUPERFAMILY ABC transporter transmembrane region 272 579 IPR036640 GO:0005524|GO:0016021
Tsu08g00455 1460 ProSiteProfiles ABC transporter integral membrane type-1 fused domain profile. 897 1158 IPR011527 GO:0005524|GO:0016021|GO:0055085|GO:0140359
Tsu08g00455 1460 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 596 820 IPR027417 -
Tsu08g00455 1460 Pfam ABC transporter 617 751 IPR003439 GO:0005524
Tsu08g00455 1460 ProSiteProfiles ATP-binding cassette, ABC transporter-type domain profile. 1210 1442 IPR003439 GO:0005524
Tsu08g00455 1460 CDD ABCC_MRP_domain2 1206 1426 - -
Tsu08g00455 1460 ProSiteProfiles ATP-binding cassette, ABC transporter-type domain profile. 599 822 IPR003439 GO:0005524
Tsu08g00455 1460 SUPERFAMILY ABC transporter transmembrane region 879 1190 IPR036640 GO:0005524|GO:0016021
Tsu08g00455 1460 Gene3D ABC transporter type 1, transmembrane domain 860 1188 IPR036640 GO:0005524|GO:0016021
Tsu08g00455 1460 Gene3D ABC transporter type 1, transmembrane domain 259 581 IPR036640 GO:0005524|GO:0016021
Tsu08g00455 1460 Gene3D - 606 852 IPR027417 -
Tsu08g00455 1460 CDD ABCC_MRP_domain1 599 799 - -
Tsu08g00455 1460 PANTHER ATP-BINDING CASSETTE SUB-FAMILY C 58 1451 - -
Tsu08g00455 1460 Gene3D - 1191 1442 IPR027417 -
Tsu08g00455 1460 Pfam ABC transporter 1225 1373 IPR003439 GO:0005524
Tsu08g00455 1460 SMART AAA_5 1234 1426 IPR003593 -
Tsu08g00455 1460 SMART AAA_5 626 799 IPR003593 -
Tsu08g00455 1460 CDD ABC_6TM_ABCC_D1 285 573 IPR044746 GO:0140359
Tsu08g00455 1460 Pfam ABC transporter transmembrane region 286 544 IPR011527 GO:0005524|GO:0016021|GO:0055085|GO:0140359
Tsu08g00455 1460 Pfam ABC transporter transmembrane region 929 1158 IPR011527 GO:0005524|GO:0016021|GO:0055085|GO:0140359
Tsu08g00455 1460 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 1198 1441 IPR027417 -
Tsu08g00455 1460 ProSitePatterns ABC transporters family signature. 724 738 IPR017871 GO:0005524
Tsu08g00455 1460 ProSiteProfiles ABC transporter integral membrane type-1 fused domain profile. 284 565 IPR011527 GO:0005524|GO:0016021|GO:0055085|GO:0140359
Tsu08g00455 1460 CDD ABC_6TM_ABCC_D2 890 1183 IPR044726 GO:0140359
Tsu08g00455 1460 PANTHER NHPM BACTERIOCIN SYSTEM ABC TRANSPORTER, PEPTIDASE/ATP-BINDING PROTEIN-RELATED 58 1451 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tsu08g00455 Tsu-Chr8 4486306 4493082 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tsu08g00455 586 853 Calmodulin-binding Proteins AT2G36910 25.939 3.52e-23 105
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tsu08g00455 - - gmx:100784827 2298.86
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Tsu08g00455 08 4486306 4493082 Tsu08g00455 08 4486306 4493082 ECH