Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tsu08g00451 ATGAATTACTTTGAGAACACAATAGgtGAAATTTCTGAGCCATTGCTAGCTCAGAAAGTTGACACAAAACAAACAGGACTAAGCCATGCTACTTTTCTCAGCAAGTTGATTTTCTGTTGGATTAATTCTTTACTCAGTTTAGGTTACTCAAAGCCACTAGCTCTTGAAGACATACCTTCCCTTGTTTCTGAAGATGAAGCAAACATGGCCTATCAAAAATTTGTTCATGCTTGGGAGTCACTTGTTAGAGAGAGGGGGAAAAATAATACAAAGAGTTTAGTTCTATGGTCTATTGTTAGAACTTACTTAAAAGAAAACTTATTAATAGCATTTTATGCATTAATCAGAACTATTTCTGTTGTAGTTTCACCTTTAATATTATATGCTTTTGTTAACTACTCAAATAGATCTGAGGAAGATCTTAGAAAAGGTCTTTCCATAGTTTGTTTTTTCATTGTCACCAAAGTGTTCGAGTCTTTGTCGCAAAGACATTGGTTTTTTAACTCAAGGAGGTCAGGAATGAAAATGAGATCAGCTCTGATGGTAGCAGTTTATCAAAAGCAGTTAAGGCTTTCTAGCTCGGCAAGGACGAGACACTCGGCCGGTGAAATTGTGAATTATATTGCAGTCGATGCATATAGAATGGGAGAATTTCCATGGTGGTTTCATATAACATGGACTTCTGCATTGCAACTTGTTCTTTCCATTGGTGTTCTTTTCAGTGTTGTTGGTATCGGTGCTCTTCCTGGTTTAGTACCTCTTGTTATATGTGGGTTTCTCAATGTACCAATTGCAAGGTTCCTACAAAATTGTCAGTCACAGTTCATGTTTGCACAGGATGAGCGTCTTCGGTCTACTTTGGAGATTCTTAATAGTATGAAGATTATTAAGTTACAATCATGGGAAGAAAAATTCAAGAACTTAGTCGAGTCGCTACGCGATAAAGAGTTCGTATGGTTGTCTAAGGCACAAATCCTGAAAGCTTATAGTTCCTTTCTTTATTGGATGTCTCCTACAGTTATATCTGCTGTTGTTTTCCTTGGATGTTCTGTTTCCAAGAGTGCGCCATTGAATGCTGAAACCATTTTCACAGTTCTTGCAACACTGAGGAATATGGGAGACCCTGTTATAATGATTCCTGAGGCTCTATGCATTATGATTCAGGTTAACGTTTCGTTCGACCGTCTTAATAGCTTTTTGCTTGATGAAGAACTAAATAATGATGATAGCGAAAGAAACTTAAAGCAATGTTCGGTTAATGCTGTGGAGATTCAAGATGGCAACTTCATCTGGGATCATGAATCTGTGTCTCCAACTTTAAGAGATGTGAATTTAGAAATCAAATGGAGACAAAAAGCTGCAATTTGTGGACCAGTTGGAGCTGGAAAATCATCTCTTTTGTATGCAATACTTGGAGAGATTCCCAAGATTCTTGGAACTGTTAATGTAGGTGGCACACTAGCATATGTCTCTCAATCTTCATGGATACAAAGTGGAACAGTTCAAGATAATATACTCTTTGGCAAGCCAATGGACACAACAAGATACGAGAAAGCAATTAAAGCTTGTGCCTTGGATAAGGATATAAGTGATTTTAGCCATGGTGATCTTACAGAAATTGGTCAAAGAGGGATCAACATGAGTGGAGGACAAAAGCAAAGGATTCAACTAGCTAGAGCAGTCTACAATGATGCTGATATCTATCTCCTTGACGATCCTTTCAGTGCAGTTGATGCACATACAGCTGCGACGCTATTCAATGATTGTGTCATGACTACTTTAAGAGAGAAAACAGTCATTCTAGTTACTCATCAAGTGGAGTTTCTCTCAGAAGTTGATACTATCTTGTTAATGGAGGGTGGGAAAGTTAGTCAATCAGGTACTTATGAAAATCTTCTGACAGCTGGAACAACCTTTGAACGACTTGTGAGTGCTCATAAAGAAACAATTACCGAGTTGAATCAagataatgaaaataaattaggaGGTTCTCAAAATGAGGTTTTGTCTAATCTTCAATACTCTCACGGTTTTTGTCTCACTAAAAATCAAAGTGAGAATGAGATTTCTAGTATCAAGGATCCAATTGGTGCACAACTTACACAAGAGGAAGAAAAAGTGATTGGTAATGTTGGATGGAAGCCATTCTGGGATTATATTAACTATTCGAAAGGGACatgcatgatgtgtttcatAATGTTAGCACAATGTGCTTTTTTGACTTTTCAAACTGCATCAACCTTTTGGCTTGCTATTGCCATTGAAATTCCAAAAGTATCCAATGTCACCTTGATTGGAGTTTACGCTTTAACTTCTTTTGCTAGCGTTGTTTTTGTACATATAAGGACTTACTTGACTGCACTTCTTGGATTAAAAGCTTCTACTACTTTCTTCTCAAGCTTCAATACAGCTATCTTCAATGCTCCAATGCTTTTGTTTGATTCAACTCCTGTAGGAAGGATTTTAACTAGAGCTTCATCAGATTTGAGTATTTTGGACTTTGATATACCGTATTCCTTCACCTTTGTAGCATCTGTATCGATTGAAATTTTGGTGATAATTTGTATAATGGTTTCAATCACATGGCAAGCTCTTATTGTTGCTATTCCTGCAATGGTTGCATCAATATTTATTCAGCAATATTATCAAGCTTCTGCAAGGGAACTAATACGGATCAACGGTACCACCAAAGCTCCAGTCATGAATTTTGCAGCTGAGACATCACTTGGAGTGGTTACTGTTAGAGCTTTCGGCATGGTAGACAGATTTTTCGAAAAATACTTAAAACTTGTGGACACAGATGCTTCATTATTCTTTCATTCTAACGTGGCAATGGAATGGGTAGTTTTAAGGGTCGAAGCACTTCAAAATTTGACTGTCATCACTGCAGCTTTGTTGCTTATTCTAGTGCCTCAGGGATATGTATCCCCAGGCCTTGTGGGACTGTCTCTTTCTTATGCTTTTACCTTGACAGGAGCCCAAATATTTTGGACTCGATGGTTTTCTAACTTATCAAACTATATTATATCTGTTGAAAGAATCAAGCAATTCATTCACATACCTGCTGAGCCTCCTGCCATTGTGGATAATTACCGACCTCCAGCTTCATGGCCTTCCAAGGGCAAGATTGATCTTCGAGGCTTAGAGATTAGATATCGTCCTAATGCTCCAATAGTCCTTAAGGGAATAACTTGTACATTTAAAGAAGGGAGTAGGGTCGGAGTTGTTGGAAGGACTGGAAGTGGTAAAAGTACACTGATTAGTGCTTTGTTTCGCTTAGTTGAGCCTTCAAGAGGTGATATTCTTATTGATGGGATGAACATTTGTTCAATGGGATTGAAGGATTTGAGGCTGAGGCTAAGCATAATCCCTCAAGAACCGACTCTTTTCAAGGGTATCATTAGAACAAACCTGGACCCTCTAGGTCTGTACTCAGATGATGAAATATGGAAGGCTTTAGAGAAGTGTCAGCTTAAGGAAACAATCAGCAAGCTACCAAGACTTTTGGACTCTTCTGTGAGTGATGAAGGTGGAAATTGGAGCTTGGGACAAAGGCAATTGTTTTGTCTTGGAAGAGTTCTACTTAAGAGAAACAGAATTCTTGTTTTGGATGAAGCTACTGCATCCATTGACTCTGTCACAGATGCCATTCTACAAAGAGTGATTAGACAAGAATTTGCAGAATGCACAGTTATAACTGTGGCTCACAGAGTTCCAACTGTCATAGACAGTGACATGGTCATGGTTTTATCTTATGGGAAATTGGTGGAATATGATGAGCCTTCAAAGCTAATGGACACCAACTCTTCATTCTCTAAGCTGGTTGCTGAATATTGGTCCAGTTGCAGGAAAAATTCCCTCCCAGATATTAGCAGGCAACATCAATGA 3888 0.3799 MNYFENTIGEISEPLLAQKVDTKQTGLSHATFLSKLIFCWINSLLSLGYSKPLALEDIPSLVSEDEANMAYQKFVHAWESLVRERGKNNTKSLVLWSIVRTYLKENLLIAFYALIRTISVVVSPLILYAFVNYSNRSEEDLRKGLSIVCFFIVTKVFESLSQRHWFFNSRRSGMKMRSALMVAVYQKQLRLSSSARTRHSAGEIVNYIAVDAYRMGEFPWWFHITWTSALQLVLSIGVLFSVVGIGALPGLVPLVICGFLNVPIARFLQNCQSQFMFAQDERLRSTLEILNSMKIIKLQSWEEKFKNLVESLRDKEFVWLSKAQILKAYSSFLYWMSPTVISAVVFLGCSVSKSAPLNAETIFTVLATLRNMGDPVIMIPEALCIMIQVNVSFDRLNSFLLDEELNNDDSERNLKQCSVNAVEIQDGNFIWDHESVSPTLRDVNLEIKWRQKAAICGPVGAGKSSLLYAILGEIPKILGTVNVGGTLAYVSQSSWIQSGTVQDNILFGKPMDTTRYEKAIKACALDKDISDFSHGDLTEIGQRGINMSGGQKQRIQLARAVYNDADIYLLDDPFSAVDAHTAATLFNDCVMTTLREKTVILVTHQVEFLSEVDTILLMEGGKVSQSGTYENLLTAGTTFERLVSAHKETITELNQDNENKLGGSQNEVLSNLQYSHGFCLTKNQSENEISSIKDPIGAQLTQEEEKVIGNVGWKPFWDYINYSKGTCMMCFIMLAQCAFLTFQTASTFWLAIAIEIPKVSNVTLIGVYALTSFASVVFVHIRTYLTALLGLKASTTFFSSFNTAIFNAPMLLFDSTPVGRILTRASSDLSILDFDIPYSFTFVASVSIEILVIICIMVSITWQALIVAIPAMVASIFIQQYYQASARELIRINGTTKAPVMNFAAETSLGVVTVRAFGMVDRFFEKYLKLVDTDASLFFHSNVAMEWVVLRVEALQNLTVITAALLLILVPQGYVSPGLVGLSLSYAFTLTGAQIFWTRWFSNLSNYIISVERIKQFIHIPAEPPAIVDNYRPPASWPSKGKIDLRGLEIRYRPNAPIVLKGITCTFKEGSRVGVVGRTGSGKSTLISALFRLVEPSRGDILIDGMNICSMGLKDLRLRLSIIPQEPTLFKGIIRTNLDPLGLYSDDEIWKALEKCQLKETISKLPRLLDSSVSDEGGNWSLGQRQLFCLGRVLLKRNRILVLDEATASIDSVTDAILQRVIRQEFAECTVITVAHRVPTVIDSDMVMVLSYGKLVEYDEPSKLMDTNSSFSKLVAEYWSSCRKNSLPDISRQHQ 1295
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tsu08g00451 1295 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 420 644 IPR027417 -
Tsu08g00451 1295 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 1034 1276 IPR027417 -
Tsu08g00451 1295 ProSiteProfiles ATP-binding cassette, ABC transporter-type domain profile. 1045 1277 IPR003439 GO:0005524
Tsu08g00451 1295 ProSiteProfiles ABC transporter integral membrane type-1 fused domain profile. 107 388 IPR011527 GO:0005524|GO:0016021|GO:0055085|GO:0140359
Tsu08g00451 1295 ProSitePatterns ABC transporters family signature. 547 561 IPR017871 GO:0005524
Tsu08g00451 1295 ProSiteProfiles ATP-binding cassette, ABC transporter-type domain profile. 422 645 IPR003439 GO:0005524
Tsu08g00451 1295 SMART AAA_5 449 622 IPR003593 -
Tsu08g00451 1295 SMART AAA_5 1069 1261 IPR003593 -
Tsu08g00451 1295 Gene3D ABC transporter type 1, transmembrane domain 83 404 IPR036640 GO:0005524|GO:0016021
Tsu08g00451 1295 Gene3D ABC transporter type 1, transmembrane domain 693 1024 IPR036640 GO:0005524|GO:0016021
Tsu08g00451 1295 PANTHER ATP-BINDING CASSETTE SUB-FAMILY C 27 1288 - -
Tsu08g00451 1295 Pfam ABC transporter 440 574 IPR003439 GO:0005524
Tsu08g00451 1295 Gene3D - 1026 1277 IPR027417 -
Tsu08g00451 1295 CDD ABC_6TM_ABCC_D2 725 1018 IPR044726 GO:0140359
Tsu08g00451 1295 ProSiteProfiles ABC transporter integral membrane type-1 fused domain profile. 731 993 IPR011527 GO:0005524|GO:0016021|GO:0055085|GO:0140359
Tsu08g00451 1295 Gene3D - 429 671 IPR027417 -
Tsu08g00451 1295 Pfam ABC transporter 1060 1208 IPR003439 GO:0005524
Tsu08g00451 1295 PANTHER NHPM BACTERIOCIN SYSTEM ABC TRANSPORTER, PEPTIDASE/ATP-BINDING PROTEIN-RELATED 27 1288 - -
Tsu08g00451 1295 CDD ABC_6TM_ABCC_D1 108 396 IPR044746 GO:0140359
Tsu08g00451 1295 Pfam ABC transporter transmembrane region 109 368 IPR011527 GO:0005524|GO:0016021|GO:0055085|GO:0140359
Tsu08g00451 1295 Pfam ABC transporter transmembrane region 729 993 IPR011527 GO:0005524|GO:0016021|GO:0055085|GO:0140359
Tsu08g00451 1295 CDD ABCC_MRP_domain1 422 622 - -
Tsu08g00451 1295 SUPERFAMILY ABC transporter transmembrane region 714 1025 IPR036640 GO:0005524|GO:0016021
Tsu08g00451 1295 CDD ABCC_MRP_domain2 1041 1261 - -
Tsu08g00451 1295 SUPERFAMILY ABC transporter transmembrane region 95 402 IPR036640 GO:0005524|GO:0016021
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tsu08g00451 Tsu-Chr8 4431837 4437705 Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tsu08g00451 422 653 Calmodulin-binding Proteins AT2G36910 28.400 8.23e-20 94.4
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tsu08g00451 - - gmx:100784827 2035.38