Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tsu08g00415 ATGGATGGTTTGAATTGGGATGGCTCACAATTTGAAGAGAACACACCAATCATGTGGAATACACAAAACTTTGAAGGAGGCTACAACACATCAAACTCTCTTACTCATCAAATACAAGAGATGCATAAAGTTCAAATTGGTAACACATATTCCAATTCTGAAAGAGTGATTCCAAACACAAATCTTTCACAGCATGCAACAACTTTGACAGTCAAATCAAAAGCTGGATCCAGCTGGAGAGAAGAGCCTTTAATACCTCAATCATATAAGTCTCTTTCTTCTTACAACATTATGCCAGATTTCAACATGGCCCACCAACAAAAACAACTCAACAActcttttgattgtttgcttTCAGCTAGTAATAGTAACACAGCAGACACTTCTgttgaaaatgatgatgatggaatttcaaagttattttctgACTGCAAAAATTTATGGAACTTCAGTTATGTCAGTACTACAGCTTCCTCTGGTGAAGCAGATAGTAATGTTTCAAATGGTACAAgctatgaagcaccgacacaaATACAGGCACCAAACAAGGCTTCAATCAGAAGTGTCGGTTCAAACGGTACAAGCTATCTGGCACAAACATGCACACCAGACACACATTCAATCAGAAGTGTTGGTTCAAATGGTAAAAGCTATGAAGCTCCAACACAAATACAAACACTAGACAAATCTTCAATCAGAAATGTCGGTTCAAATGGTACAAgctatgaagcaccgacacagACACAGATGCAGACATCAGACACATCTTTGATCAGAAGTGTTGGTGCTACAGAGTGTACAAGAAACAAAGACACGCAGTGTCCACTCAGTATTGAACTTGATGAAACAATGTCTCAAAGCTCATCAGATCAATATATgaatcaaagaaaaacaatacaTTCAAGTACTATTCATAATTCTTCATCTGTTGAAGATGGTTTTAGACTTATCACTGATAAACCACCAAAAAGCAAGAAACCAAGATGTGATAAGGGACCTTGTTCaactaatataaattttcaacaaccaaattcatcatcatcaatgtgTTATTCTTCTTCAAATGAAGAACCAGATCCAGAGGCAATAGCACAAATGAAGGAAATGATGTATAGAGCAGCAGCATTTAGACCAGTGAATTTTGGAATGGATGATATTGATGTGATTGAAAAAAAGCCTAAAAGGAAGAATGTTAAGATATCAAATGATCCACAAACAGTGGCTGCAAGACATAGAAGGGAAAGAATAAGTGATAGGATTAGGGTTTTGCAAAAGATTGTTCCTGGTGGAAACAAAATGGACACTGCTTCAATGCTTGATGAGGCTGCAAATTATCTCAAGTTTTTAAGATCACAAGTTAAGGCACTTGAAAGTTTAGGGAACAAAGTTAATTCAATGGATTGTAATCCAACTAGTATTGCTTTTTCTTTTAACCCTTCTTTTCACATGCAAATTCCTAATCACAACAATCATAATTCACAGGGTTGa 1488 0.3266 MDGLNWDGSQFEENTPIMWNTQNFEGGYNTSNSLTHQIQEMHKVQIGNTYSNSERVIPNTNLSQHATTLTVKSKAGSSWREEPLIPQSYKSLSSYNIMPDFNMAHQQKQLNNSFDCLLSASNSNTADTSVENDDDGISKLFSDCKNLWNFSYVSTTASSGEADSNVSNGTSYEAPTQIQAPNKASIRSVGSNGTSYLAQTCTPDTHSIRSVGSNGKSYEAPTQIQTLDKSSIRNVGSNGTSYEAPTQTQMQTSDTSLIRSVGATECTRNKDTQCPLSIELDETMSQSSSDQYMNQRKTIHSSTIHNSSSVEDGFRLITDKPPKSKKPRCDKGPCSTNINFQQPNSSSSMCYSSSNEEPDPEAIAQMKEMMYRAAAFRPVNFGMDDIDVIEKKPKRKNVKISNDPQTVAARHRRERISDRIRVLQKIVPGGNKMDTASMLDEAANYLKFLRSQVKALESLGNKVNSMDCNPTSIAFSFNPSFHMQIPNHNNHNSQG 495
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tsu08g00415 495 Coils Coil 439 459 - -
Tsu08g00415 495 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 406 459 IPR036638 GO:0046983
Tsu08g00415 495 SMART finulus 406 455 IPR011598 GO:0046983
Tsu08g00415 495 PANTHER TRANSCRIPTION FACTOR HEC3-RELATED 1 489 IPR045843 GO:0003700|GO:0006355
Tsu08g00415 495 MobiDBLite consensus disorder prediction 334 358 - -
Tsu08g00415 495 Gene3D - 405 468 IPR036638 GO:0046983
Tsu08g00415 495 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 400 449 IPR011598 GO:0046983
Tsu08g00415 495 CDD bHLH_AtIND_like 401 459 - -
Tsu08g00415 495 PANTHER TRANSCRIPTION FACTOR BHLH87 1 489 - -
Tsu08g00415 495 Pfam Helix-loop-helix DNA-binding domain 410 449 IPR011598 GO:0046983
Tsu08g00415 495 MobiDBLite consensus disorder prediction 319 358 - -
Tsu08g00415 495 MobiDBLite consensus disorder prediction 232 254 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tsu08g00415 Tsu-Chr8 4164195 4167231 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tsu08g00415 300 491 Basic Helix-Loop-Helix Transcription Factor Gene Family AT3G21330 61.000 1.55e-62 206
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Tsu08g00415 HLH 2.2e-05 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tsu08g00415 - - gmx:100793830 282.722
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Tsu08g00415 08 4164195 4167231 Tsu08g00415 08 4164195 4167231 ECH