Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tsu08g00406 ATGTTTCTGCATTTTCTTTTGGTATTGCATGCTGTCCTTACTATTTTGGTTTTCATACAAGCTCAAGCTCAGCAGGATGATCAATCAGGATTCACTAGCATAGATTGTGGTCTACCTGAAAATTCAAACTACACTGAGAAGAGTACAGGCATAAATTACATATCAGATGCCGATTTCGTAGATACAGGTGTAAGTAAGAGCATATCACCTGCAGAGAGGATTACTCATCAACAACAATTACATTTTGTAAGGAGCTTTCCTAATGGAGTGAGAAACTGTTACAGAATAAATGTTAACATTGGTACTGAATATTTAATCAGAGCTACCTTCTATTATGGAAACTATGATAGTCTAAATAAGCCACCACAATTTGAACTTCATTTTGGAGTTAATTTGTGGGATACAGTGAAGTTCCCAAATGCATCACGCACGATAATGAGTGAGATCATTTACATTCCATCAAAAGATTACATACAACCATGTCTTGTTAACACTGGCAAAGGGACGCCATTCATTTCAGCTATAGAATTGAGGACTTTGAACAATAAAACTTATATCGGAGACTCAAAAGACTCAGATAAACTAGTATTATCACTCTCCATGAGATATGATTTAGGTTCCATCACAAATTTAGAATACagGTACAAAGATGATGTTTATGACCGTATTTGGGAGCCTTATGAATTATCCAGTGATTGGAGACAATTAAACGCCTCACTTAACAATGATGAACTAGTTCAGAATATTTATAAACCACCAGCAATTGTGATGAGCACTGCTGTTACACCAGTAAATGCCAGTGCCCCTTTACAATTTCATTGGGATGCAGATAATGTAAATGACCAATACTACATCTGTTTGCACTATACTGAGGTTGAGAAGTTGGCTGGAAATGAAACTAGAGCATTCAATATCACACTTAATGGAGACTTTTGGTATGGACCTGTGATACCAAAATACCGGGAAGCACACACCCTAATTACTACAATATCTAACACGGGATCCAATCAAATTTCCCTTTTGAAGACAGAGATGTCAACTCTTCCACCCATCCTCAATGCCATTGAGATTTATAAAAGAATAGACTTCTCACAATCAGAAACACTACAGGATGATGTTATAGCTATGACAAACATCAATAATGCTTATGGGGTGGCTAGAAATTGGCAAGGAGATCCATGTTTCCCTGTGAATTACATGTGGGAAGGCCTGAACTGTAGTATTGATGGCAATAACATTTCAAGAATCACATCCTTAGATTTGTCTTCAAGTGAATTGACAGGGAATGTAGCATCTTCCATCTCAAAGCTCACTATGTTGCAACACTTGGATTTATCAAATAATAGCTTAAACGGTTCCCTACCTGATTTTCTGATGCAACTGAGGTCACTAAAAGTCTTAAACGTGAGGAAGAATAAACTTAAGGGGTTAGTTCCAAGTGGACTCCTTGAGAGATCACAAAATGGTTCACTATCACTTAATGTGGATGATAATCCTGAACTTTGTATGATGGAATCCTGTAGAAAGCAGAATTTGTTTGTACCACTTATTACATCGTTTTCGGCATTAATTGTTgtaatcctcttcatttctctTGGATTTTGGATATTCAAAAGACAAAAAGGTACTTCAACTATATGGTCAAATTCTAAGAAAAGCGTTTCAATGAAATCAAAGCATCAAAGATTTAGTTACAGTGAAATTCTCAATATGACTGATAACTTCAAAACTATTATTGGAGATGGAGGATTTGGAAAAGTTTACATTGGCATTTTACAAGAACACACTCAAGTTGCTGTTAAGATGCTTTCGACATCATCAAAGCAAGGTTATAAGGAATTTCAATCCGAGGCACAACTTCTAACGATCGTTCATCATAGAAATTTGGTATCTCTCATGGGATACTGTGATGAAGGTGAAATCAAAGCATTGGTTTATGAATACATGACCAATGGAAATCTCCAACAACACTTATTCGgtaatttatgtttttgtcTTTAG 2001 0.3543 MFLHFLLVLHAVLTILVFIQAQAQQDDQSGFTSIDCGLPENSNYTEKSTGINYISDADFVDTGVSKSISPAERITHQQQLHFVRSFPNGVRNCYRINVNIGTEYLIRATFYYGNYDSLNKPPQFELHFGVNLWDTVKFPNASRTIMSEIIYIPSKDYIQPCLVNTGKGTPFISAIELRTLNNKTYIGDSKDSDKLVLSLSMRYDLGSITNLEYRYKDDVYDRIWEPYELSSDWRQLNASLNNDELVQNIYKPPAIVMSTAVTPVNASAPLQFHWDADNVNDQYYICLHYTEVEKLAGNETRAFNITLNGDFWYGPVIPKYREAHTLITTISNTGSNQISLLKTEMSTLPPILNAIEIYKRIDFSQSETLQDDVIAMTNINNAYGVARNWQGDPCFPVNYMWEGLNCSIDGNNISRITSLDLSSSELTGNVASSISKLTMLQHLDLSNNSLNGSLPDFLMQLRSLKVLNVRKNKLKGLVPSGLLERSQNGSLSLNVDDNPELCMMESCRKQNLFVPLITSFSALIVVILFISLGFWIFKRQKGTSTIWSNSKKSVSMKSKHQRFSYSEILNMTDNFKTIIGDGGFGKVYIGILQEHTQVAVKMLSTSSKQGYKEFQSEAQLLTIVHHRNLVSLMGYCDEGEIKALVYEYMTNGNLQQHLFGNLCFCL 666
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tsu08g00406 666 SUPERFAMILY L domain-like 366 484 - -
Tsu08g00406 666 ProSitePatterns Protein kinases ATP-binding region signature. 579 601 IPR017441 GO:0005524
Tsu08g00406 666 PANTHER LRR RECEPTOR-LIKE KINASE PLANT-LIKE PROTEIN 20 660 - -
Tsu08g00406 666 Gene3D Ribonuclease Inhibitor 374 501 IPR032675 -
Tsu08g00406 666 Pfam Leucine rich repeat 415 474 IPR001611 GO:0005515
Tsu08g00406 666 Pfam Protein tyrosine and serine/threonine kinase 575 658 IPR001245 GO:0004672|GO:0006468
Tsu08g00406 666 ProSiteProfiles Protein kinase domain profile. 573 666 IPR000719 GO:0004672|GO:0005524|GO:0006468
Tsu08g00406 666 SUPERFAMILY Protein kinase-like (PK-like) 546 662 IPR011009 -
Tsu08g00406 666 PANTHER OS07G0107800 PROTEIN-RELATED 20 660 - -
Tsu08g00406 666 Pfam Malectin-like domain 34 359 IPR024788 -
Tsu08g00406 666 Gene3D Phosphorylase Kinase; domain 1 546 648 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tsu08g00406 Tsu-Chr8 4060682 4078459 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tsu08g00406 2 660 Receptor kinase-like Gene Family AT1G05700 44.206 0.0 539
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-I-1 Tsu08g00406 Malectin_like 8.9e-113 CL0202
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tsu08g00406 - - mtr:MTR_8g014700 898.271
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Tsu08g00406 08 4060682 4078459 Tsu08g00406 08 4060682 4078459 ECH