Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tsu08g00405 ATGGAGAAAGTTCTTAGATCGTTAGATCCAAAGTTTGAGCATATTGTCACCGTCATCGAAGAGACAAAGGATTTAGAGGCCATGACAATAGAGCAACTTCTTGGGTCGTTGCAAGCTTATgaggaaaggaaaaagaagaaggaagataTCGAGGAGCAATTACTCAAGACACGAGTCGATTCACCTATAGAAGAGCATGGTCGAAGCAACCAAAGACGAGGTGACGATCGAGGACGTGGACGTGGTCGTGGATATGGAGGCGGACGAGGTTGGAGGCCTAATGATGACAACAACCAAAGAGGAGAAATCTCATCAAGAGGTCGTGGGAGAGGATCTCCAAAACCAAGGTACGATAAGTCACGAATCAAATGCTACAATTGTGAAAAGTTTGGGCATTATGCTTCCGAATGTAGAGCTCCTATCAATCGTAAAGTTGAAGAGAAGGCCAACTATGTTGAAGAAATAAACCAAGAAGATGGAACATTATTGTTGGCGCACAAAGACAATGAAAGGGGTGGAGATAATCAATGGTACCTTGACAGCGGTGCAAGCAACCATATGTGCGGGCGAAGAAACATGTTCGTAGAGCTAGATGAATCAGTGAACGGAAACGTGGCTTTTGGAGATGAATCAAAAGTGGCAGTGAAAGGTAAAGGAAATGTTCTCATCCGTTTGAAGAATGGAGATCATCAATTTATTTCCAATGTTTACTATGTGCCAAACATGAAGAGCAACATCTTGAGTCTAGGACAACTCTTAGAGAAAGGTTATGACATTCGATTGAAGAATAATAACCTTTCAATAAGAGATCATTCAAACAAGTTTATTGCTAAGGTGCCAATGTCAAGAAATAGAATGTTCGTGCTCAACATACAAAACGATGTCGCGCAATGTCTTAAGATGTGCTACAAAGAGGAGTCGTGGCTTTGGCATCTTCGATTTGGGCATCTCAATTTTGGAGGATTAGAGTTGCTATCTAAGAAGGAAATGGTTAGAGGGTTGCCTTACATTAATCACCCCAATCAAGTATGCGAAGGATGTCTACTTGGAAAGCAGTTCAAAATGAGCTTTCCCAAGGAGTCAAGCTCAAGAGCGCAAAACCCATTAGAGCTCATACATACGGATGTGTGCGGTCCGATCAATCCAAGATCACTTggtaagagtaactacttcctTCTCTTTATTGacgatttttcaagaaaaacatgGGTGTACTTTTTGAAGGAGAAATCAGAAGTGTTTGAGAACTTCAAAAAGTTTAAAGCCCTTGTTGAGAAGGAAAGTGGTCGTGTGATCAAAGCCATAAGATCCGACCGAGGAGGAGAATTCACATCAAATGAATTTTTGAAGTATTGTGAAGACAACGGAATTCGGAGACAACTGACGGTGCCAAGATCCCCCCAACAAAACGGAGTagcagagagaaagaatagGACAATCCTTGAGATGGCAAGGAGCATGCTAAAAAGCAAAAGACTACCAAAGGAACTATGGGCAGAAGCTATTGCATGCGCGGCTCAGGATCAATCAGGATTTATTAGTTTAGATTGTGGTCAATCTGAAGATGTGAGCTATTCGGCGTATCCGACAGGCATAAATTACACATCAGATGCCAAATTCGTAGATACAGATACAAGTAAAAGAAAGGGGATACCATTCATTTCAACAATAGAATTGAGGCCTTTACCCAATACAGCTTATGAAACAGTCTCAGCTATATCAGTATTATCACTCAAACAACCGCCTTTACCCAATAGAATTGGGCGATATGGTTTAGGTTCCAACCCAGACAAAGCATACAGGTACAAAGATGATCTTTATGACCGTATCTGGGGGCCTTATTATGAATTATCTAGTGATTGGAGACGATTAAGCACCTCAGTTAACAATGTAAATCTATCATCATTTCCTGATCAGAATATTTATAAACCACCAGCAATTGTGATGAGCACTGCGGTTACACCAGTAAATGCCAATGCCCCTTTACAATTTCATTGGGATGCAAATAATGTACATGAGAAATTTTACTTGTACATGTACTTCTATGAGGTTCAAGAGTTGGCAGCCAATGAAACTAGAATATTTAATATCTCAGTGAATAATGTCATCTCGTATGGACGTGTGGCGCCACCAAATTACGTATATGCTAGAGGTTTGACCGGACACAAAACGTATCTAATCACCCTTTCTAAGACAGAGATGTCAACTCTTCCACCCATCCTTAATGCTTTTGAGATTTATAAAGTAAAAGACTTCTCACAATCAGAAACTCAAAAGGATGATGTTGATTCTATCACAAACATCAAGAAGACTTATAGGGTGGAAAGAAATTGGCAAGGAGATCCATGTGCCCCTGTTGAGTACATATGGCAAGGCCTAAACTGTAGTGTTGATGGCAATAACATACCAAGAATCACATCCTTGGACTTGTCTTCAAGCGGATTGACAGGGAAGATAACATCTTCCATCTCAAAGCTCACTATGTTACAGCACTTGGATTTATCAAATAATAGCTTAAATGGTCCCCTACCTGATTTCCTGATGCAACTGCGGTCACTAAAAGTATTAAACGTGGAAAAGAACAAACTTACAGGGTTAGTCCCAAGTGAACTCGTTGAGAGATCAAAACGAGGTTTACTATCATTAAGTGTGGATGATAATCCTGGTCTTTGTATGACTGCATCATGCggaaagaagaagaatttgTCTGTACCACTGATTGCATCGTTTTCGGCATTAGTTGTTGTAATCCTGTTGATTTCTCTTGGATATTGGTTATTTAGAAGATCAAAAGTTATGTCTACATATTCTAAGAAAAAGGTTTCAATGAAATCAAAGCATCAAACATTCCGTTATACTGAAATTCTCAATATTACTGATAACTTCAAAACTATTATTGGAGATGGAGGATTTGGAAAAGTTTATCTTGGTTTTCTACAAAATCACACTCAAGTTGCTGTTAAGATACTTTCACCATCTTCAATGCAAGGTTATAAGGAATTTCAATCAGAGGCACAACTTCTAATGATTGTTCATCATAGAAATTTGGTCTCTCTCATTGGATATTGTGATGAAGGTGAAATTAAAGCATTGATTTATGAATACATGGCTAATGGAAATCTCCAACAACACTTATTAGTGGAAAATTCAAATATCTTACAATGGAATGAGAGACTTAACATTGCAGTAGATGCAGCATATGGATTGGATTATCTGCATAATGGATGTAAACCACCAATTATGCATAGAGATTTGAAGCCTTCCAACATATTACTAGATGAAAACATGCATGCCAAGATTGCTGATTTTGGTCTAAGTAGAGCGTTTGGTAATGACATTGATTCGCATATATCCACGCGTCCTGCTGGTACACTTGGTTATGCTGATCCCGAaTTTCAAAGGTCCggaaacacaaataaaaaaaatgatgtgtaCAGCTTTGGGGTAATTCTATTTGTGTTGATCACTGGTCGTCAAGCAATAGTAAGAGCAGGTGGAGAAAACTACCACATTCTTGAAAGGGTTATTCCTACAATCAAAGGAGGAGATATTCAAAATGTTATTGATCCAAGATTGGAGGGTGAATTCAGCATCAATTCAGCATGGAAAGTGGTAGAGATTGCCATGTCATGCGTTTCACCAAATGTCGCTGAAAGGCCGGACATTAGCCAAATATTGATAGAACTGAAGGAGAGTCTATCTTTAGAGATGGTTCATAGACACGGAGAAAGAGAAAACGATGAAGTAGGTAATGGAGTAGGACAGTGTCAACTTGAGGAATGGGACCAGTTTGAGGAATACTTGAGGGAGAAGCTTAGATTGTGTCAACATGAAGATGTGAGATATTCTGCTTTGAAGACAAACATAAATTACATTTCAGATGCCAAATTCATAGATACTGGTGTAAGTAAAAGGTTAGGAAAATTTGTTCAACAACAACTAACCTATGTGAGGAGCTTTCCTAATGGAGTGAGAAATTGTTACAGAATAAATGTAGCAAGTGGTACTAAATATTTAATCAGAGCTTCTATCTATTATGGTAACTATGACAATCTAAATAAGCCACCACAATTTGATCTTCATCTTGGAGCTAATGTGTGGGATACTGTGAAGTTGTTCTCCAATGAATCAGATATCACAACCAGGGAAATCATTTACACTTCACCACTCAATTACATACAAACATGTCTTGTTAACACAGGAAATGGAATTCCATTCATATCAGCTGTAGAATTGAGGTCTTTGAACAGTTCTATTTATGTCCCGTTCTCAGAGGCCTTTCCACACATATACGAAGCTAAATCCATCTTATATCAAGCGATACAATTTAGCGATTGGGGTGGTTATAAACCACTGGAAATTGTGATGAGAACTGCTGTTACACCAGTAAATGCCAGTGCCCCTTTACATTTTCATTGGGATGCAGATAATGTAAATGACCGATTCTACGTCTTCATGCACTTCTATGACTTCGAAGAGCGGGCAGCTAATGCAACTAGAGCGTTAAATATCACTGTGAATGACATGTATATATTCAGAAAAGATACCTGA 4551 0.3784 MEKVLRSLDPKFEHIVTVIEETKDLEAMTIEQLLGSLQAYEERKKKKEDIEEQLLKTRVDSPIEEHGRSNQRRGDDRGRGRGRGYGGGRGWRPNDDNNQRGEISSRGRGRGSPKPRYDKSRIKCYNCEKFGHYASECRAPINRKVEEKANYVEEINQEDGTLLLAHKDNERGGDNQWYLDSGASNHMCGRRNMFVELDESVNGNVAFGDESKVAVKGKGNVLIRLKNGDHQFISNVYYVPNMKSNILSLGQLLEKGYDIRLKNNNLSIRDHSNKFIAKVPMSRNRMFVLNIQNDVAQCLKMCYKEESWLWHLRFGHLNFGGLELLSKKEMVRGLPYINHPNQVCEGCLLGKQFKMSFPKESSSRAQNPLELIHTDVCGPINPRSLGKSNYFLLFIDDFSRKTWVYFLKEKSEVFENFKKFKALVEKESGRVIKAIRSDRGGEFTSNEFLKYCEDNGIRRQLTVPRSPQQNGVAERKNRTILEMARSMLKSKRLPKELWAEAIACAAQDQSGFISLDCGQSEDVSYSAYPTGINYTSDAKFVDTDTSKRKGIPFISTIELRPLPNTAYETVSAISVLSLKQPPLPNRIGRYGLGSNPDKAYRYKDDLYDRIWGPYYELSSDWRRLSTSVNNVNLSSFPDQNIYKPPAIVMSTAVTPVNANAPLQFHWDANNVHEKFYLYMYFYEVQELAANETRIFNISVNNVISYGRVAPPNYVYARGLTGHKTYLITLSKTEMSTLPPILNAFEIYKVKDFSQSETQKDDVDSITNIKKTYRVERNWQGDPCAPVEYIWQGLNCSVDGNNIPRITSLDLSSSGLTGKITSSISKLTMLQHLDLSNNSLNGPLPDFLMQLRSLKVLNVEKNKLTGLVPSELVERSKRGLLSLSVDDNPGLCMTASCGKKKNLSVPLIASFSALVVVILLISLGYWLFRRSKVMSTYSKKKVSMKSKHQTFRYTEILNITDNFKTIIGDGGFGKVYLGFLQNHTQVAVKILSPSSMQGYKEFQSEAQLLMIVHHRNLVSLIGYCDEGEIKALIYEYMANGNLQQHLLVENSNILQWNERLNIAVDAAYGLDYLHNGCKPPIMHRDLKPSNILLDENMHAKIADFGLSRAFGNDIDSHISTRPAGTLGYADPEFQRSGNTNKKNDVYSFGVILFVLITGRQAIVRAGGENYHILERVIPTIKGGDIQNVIDPRLEGEFSINSAWKVVEIAMSCVSPNVAERPDISQILIELKESLSLEMVHRHGERENDEVGNGVGQCQLEEWDQFEEYLREKLRLCQHEDVRYSALKTNINYISDAKFIDTGVSKRLGKFVQQQLTYVRSFPNGVRNCYRINVASGTKYLIRASIYYGNYDNLNKPPQFDLHLGANVWDTVKLFSNESDITTREIIYTSPLNYIQTCLVNTGNGIPFISAVELRSLNSSIYVPFSEAFPHIYEAKSILYQAIQFSDWGGYKPLEIVMRTAVTPVNASAPLHFHWDADNVNDRFYVFMHFYDFEERAANATRALNITVNDMYIFRKDT 1516
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tsu08g00405 1516 ProSiteProfiles Integrase catalytic domain profile. 364 503 IPR001584 GO:0015074
Tsu08g00405 1516 Pfam GAG-pre-integrase domain 293 352 IPR025724 -
Tsu08g00405 1516 ProSitePatterns Serine/Threonine protein kinases active-site signature. 1080 1092 IPR008271 GO:0004672|GO:0006468
Tsu08g00405 1516 PANTHER OS07G0107800 PROTEIN-RELATED 1448 1510 - -
Tsu08g00405 1516 PANTHER OS07G0107800 PROTEIN-RELATED 1274 1424 - -
Tsu08g00405 1516 PANTHER OS07G0107800 PROTEIN-RELATED 500 548 - -
Tsu08g00405 1516 PANTHER OS07G0107800 PROTEIN-RELATED 549 1245 - -
Tsu08g00405 1516 Pfam Integrase core domain 367 467 IPR001584 GO:0015074
Tsu08g00405 1516 Gene3D Ribonuclease Inhibitor 762 879 IPR032675 -
Tsu08g00405 1516 Gene3D - 113 190 - -
Tsu08g00405 1516 Pfam Protein tyrosine and serine/threonine kinase 962 1227 IPR001245 GO:0004672|GO:0006468
Tsu08g00405 1516 SUPERFAMILY L domain-like 776 902 - -
Tsu08g00405 1516 CDD STKc_IRAK 966 1231 - -
Tsu08g00405 1516 ProSiteProfiles Protein kinase domain profile. 960 1233 IPR000719 GO:0004672|GO:0005524|GO:0006468
Tsu08g00405 1516 Pfam Zinc knuckle 122 138 IPR001878 GO:0003676|GO:0008270
Tsu08g00405 1516 Gene3D Transferase(Phosphotransferase) domain 1 1036 1251 - -
Tsu08g00405 1516 Gene3D Phosphorylase Kinase; domain 1 941 1035 - -
Tsu08g00405 1516 SUPERFAMILY Protein kinase-like (PK-like) 944 1228 IPR011009 -
Tsu08g00405 1516 SUPERFAMILY Ribonuclease H-like 364 505 IPR012337 -
Tsu08g00405 1516 MobiDBLite consensus disorder prediction 95 118 - -
Tsu08g00405 1516 ProSiteProfiles Zinc finger CCHC-type profile. 123 138 IPR001878 GO:0003676|GO:0008270
Tsu08g00405 1516 SUPERFAMILY Retrovirus zinc finger-like domains 105 142 IPR036875 GO:0003676|GO:0008270
Tsu08g00405 1516 PANTHER LRR RECEPTOR-LIKE KINASE PLANT-LIKE PROTEIN 1448 1510 - -
Tsu08g00405 1516 PANTHER LRR RECEPTOR-LIKE KINASE PLANT-LIKE PROTEIN 1274 1424 - -
Tsu08g00405 1516 PANTHER LRR RECEPTOR-LIKE KINASE PLANT-LIKE PROTEIN 500 548 - -
Tsu08g00405 1516 PANTHER LRR RECEPTOR-LIKE KINASE PLANT-LIKE PROTEIN 549 1245 - -
Tsu08g00405 1516 Coils Coil 30 57 - -
Tsu08g00405 1516 Gene3D - 359 508 IPR036397 GO:0003676
Tsu08g00405 1516 ProSitePatterns Protein kinases ATP-binding region signature. 966 988 IPR017441 GO:0005524
Tsu08g00405 1516 SMART c2hcfinal6 123 139 IPR001878 GO:0003676|GO:0008270
Tsu08g00405 1516 Pfam Leucine rich repeat 803 863 IPR001611 GO:0005515
Tsu08g00405 1516 SMART serkin_6 960 1238 IPR000719 GO:0004672|GO:0005524|GO:0006468
Tsu08g00405 1516 Pfam Malectin-like domain 1447 1511 IPR024788 -
Tsu08g00405 1516 Pfam Malectin-like domain 1279 1420 IPR024788 -
Tsu08g00405 1516 Pfam Malectin-like domain 546 749 IPR024788 -
Tsu08g00405 1516 MobiDBLite consensus disorder prediction 53 83 - -
Tsu08g00405 1516 MobiDBLite consensus disorder prediction 53 118 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tsu08g00405 Tsu-Chr8 3985609 4054470 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tsu08g00405 502 545 Receptor kinase-like Gene Family AT2G19230 54.545 7.19e-07 52.4
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-I-1 Tsu08g00405 PK_Tyr_Ser-Thr 1e-44 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tsu08g00405 - - mtr:MTR_8g014700 918.302