Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tsu08g00404 CGTGGATGATAATCCCGGTCTTTGTACGAAAAAATCCTGTGGAAAGAAGAGTTTGTTTGTACCATTGATTGCATCGTTTTCAGCATTAATTGTTGCAGTCCTCTTGATTTATCTTGGATTTTGGATATTCAGAAGACATAAAGGTATTTTGATTATAATATCAGATTTTACTTTTTTGCTACCtcattcatgttttttttcACATTCTAGCATATATTTTATCACTACTGCAGTAACGTCTAGAAATTCTAAGAAAAGGGGATCACTGGAAACAAAACACCAGGCATTCAGTTACACTGAAATTCTCGATATTACTGATAACTTCAAAACTATTGTTGGAGAAGGTGGATTTGGAAAAGTTTATGTCGGCCTTCTACAAAATCACACTCAAGTTGCGGTTAAGATACTTTCACCATCCTCAATGCAAGGTTATAAGGAATTTCAATCAGAGGCACAACTTCTAATGATTGTTCATCATAGAAATTTGGTCTCTCTCATTGGATattgtgatgaagatgaaatCAAAGCATTGGTTTATGAATACATGGCCAATGGAAATCTTCAACAACACTTATCAGGTAATTATGTTTTGCCCGTAAGTAAACTTTTTGACAATATTCAGTGTTTCAAGACTAATGCCTATAATTTGCATACAGTGAAAAATACAAATATCTTAAAATGGAATGAGAGGCTTAACATTGCAGTTGATTCAGCACACGGATTGGAATATCTGCATAATGGATGTAGACCACCTATTATGCATAGAGATTTGAAACCTTCCAACATACTACTAGATGAGAACTTGCAAGCAAAAATTGCTGATTTTGGTCTAAGTAGAGCTTTTGGTAACGATAATGATTCTCATATATCCACACGTCCCGCTGGTACATTTGGTTACGTTGATCCAGAATTCCAAAGAACAGGAAACATAACTAAGAAAAATGATATCTACAGCTTTGGGATAATTCTATTTGAGTTGATCACCGGAAAGAAAGCAGTAGTAAGAGCATTAGGAGAAAGCACTCACATACTTCAATGGGTTATTCCCATAGTTAAAAGAGGAGATATTCGAAACATTGTTGATACGAGGTTGCAAGGTGAATTCAGCATCAATTCAGCATGGAAAGTTGTCGAGATAGCCATGTCCTGCATTTCACAAAATGCGGTTGAAAGGCCGGACATCAGCCAAATATTGGTAGATTTAAATGAATGTCTATCTTTGGATGTAGGTCGGAGCAATGGTGAAAGAGAAAGAGATATAATTGAATTGACTTCTTTATCTATTGAATCAGAAACTGCTCCATTAGCTAGGTAA 1315 0.3468 VDDNPGLCTKKSCGKKSLFVPLIASFSALIVAVLLIYLGFWIFRRHKGILIIISDFTFLLPHSCFFSHSSIYFITTAVTSRNSKKRGSLETKHQAFSYTEILDITDNFKTIVGEGGFGKVYVGLLQNHTQVAVKILSPSSMQGYKEFQSEAQLLMIVHHRNLVSLIGYCDEDEIKALVYEYMANGNLQQHLSGNYVLPVSKLFDNIQCFKTNAYNLHTVKNTNILKWNERLNIAVDSAHGLEYLHNGCRPPIMHRDLKPSNILLDENLQAKIADFGLSRAFGNDNDSHISTRPAGTFGYVDPEFQRTGNITKKNDIYSFGIILFELITGKKAVVRALGESTHILQWVIPIVKRGDIRNIVDTRLQGEFSINSAWKVVEIAMSCISQNAVERPDISQILVDLNECLSLDVGRSNGERERDIIELTSLSIESETAPLAR 437
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tsu08g00404 437 Gene3D Phosphorylase Kinase; domain 1 87 181 - -
Tsu08g00404 437 PANTHER OS07G0107800 PROTEIN-RELATED 2 50 - -
Tsu08g00404 437 PANTHER OS07G0107800 PROTEIN-RELATED 218 432 - -
Tsu08g00404 437 SUPERFAMILY Protein kinase-like (PK-like) 88 401 IPR011009 -
Tsu08g00404 437 CDD STKc_IRAK 112 403 - -
Tsu08g00404 437 ProSiteProfiles Protein kinase domain profile. 106 405 IPR000719 GO:0004672|GO:0005524|GO:0006468
Tsu08g00404 437 SMART serkin_6 106 405 IPR000719 GO:0004672|GO:0005524|GO:0006468
Tsu08g00404 437 Gene3D Transferase(Phosphotransferase) domain 1 182 415 - -
Tsu08g00404 437 PANTHER OS07G0107800 PROTEIN-RELATED 66 193 - -
Tsu08g00404 437 Pfam Protein tyrosine and serine/threonine kinase 108 400 IPR001245 GO:0004672|GO:0006468
Tsu08g00404 437 PANTHER LRR RECEPTOR-LIKE KINASE PLANT-LIKE PROTEIN 2 50 - -
Tsu08g00404 437 PANTHER LRR RECEPTOR-LIKE KINASE PLANT-LIKE PROTEIN 218 432 - -
Tsu08g00404 437 PANTHER LRR RECEPTOR-LIKE KINASE PLANT-LIKE PROTEIN 66 193 - -
Tsu08g00404 437 ProSitePatterns Serine/Threonine protein kinases active-site signature. 252 264 IPR008271 GO:0004672|GO:0006468
Tsu08g00404 437 ProSitePatterns Protein kinases ATP-binding region signature. 112 134 IPR017441 GO:0005524
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tsu08g00404 Tsu-Chr8 3934932 3969750 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tsu08g00404 1 437 Receptor kinase-like Gene Family AT1G51830 41.850 5.01e-117 356
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_PERK-1 Tsu08g00404 PK_Tyr_Ser-Thr 3.2e-48 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tsu08g00404 - - mtr:MTR_8g014970 571.622