Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tsu08g00402 ATGAAGCAAACAATGATGGGAATGTTTCAGCATTTTCTTTCGGTATTGCTTAGTGTCCTTACTATTTTGGTTTTGATACAATCTCAGGATCTATCAGGATTCATTAGCATAGATTGTGGTCTACCAGAACATTTGAGCTATTCTGATAGGAAAACGGGCATAGGCTACATTTCAGATGCCAAATTCATACATACAGGTGTAAGTAAGAGGTTATTAGGCAATTCTGAAAAGCTTAGTCAACAACTGGAATATGTGAGAAGCTTTCCTAAGGGAGTGAGGAATTGTTACAGAATAAATGTAACAAGTGGTACTAAATATTTAATCAGAGCTACTTTCTATTATGGTAACTATGATAATGAAAACTATCTTCCAcaatttgatcttcttcttGGAGCTAATCTGTGGGCTAAAGTGAAGTTCACCAATGCAACATACACCATAAGGGGTGAGATCGTTTACACTCCATCACTAGATTACATACAACCATGTCTTGTTAATACTGGCAAAGGGACTCCATTCATTTCAGCTATAGAGTTGAGGAATTTGAACAATGAAGTTTATGTCACAAACTCAGCTAAATCAGTATTATCAGTCTTCAGGCGATACGATTTAGGTTCCATCACAAACTTAAACTACAGGTACAAAGATGATGTTTATGACCGCATTTGGGCGCCTTCTTTTTTATACAGTGATTGGACACGATTAAACACCTCACTTAACAATGACGATCTGGTTCAGAAAGATTATGAACTACCAGCAATTGTGATGAGTAATGCTATTACACCAGTAAATGCTAGTGCCCCTTTACAATTTGAATGGGAAGCAGATAATGTAAATGAACAATACTACGCATATTTGCACTTTAACGAGGTTGAGAAGCTGGCAGAAAATGAAACTAGAGCATTTAATATCACAATGAATGACGAGTATTGGTATGGACCTTCAGAGATACCTAAATATCAGTCAGTACATAACATAGTTAGTACAAAACCTTTGACTGGAGCCACAAGTTATCTATTTTCCCTTTCTAAGACCGAGAATTCAACCCTTCCACCCATCCTTAATGCCATTGAGGTTTTTAAAGTAAAAGACTTCTCACAATCAGAAACTCAACAAGATGATGTTGATTCTATCACAAACATCAAGAATGCTTATGGGGTGGCTAGAAATTGGCAAGGAGATCCATGTGCTCCTGTGAACTACATGTGGGAAGGTTTAAACTGTAGTATCAATGGCAATAACATCCCAAGAATCACATTTTTGAATTTGTCTTCAAGTGGATTGACAGGCCAGATAGCATCTTCCATATCAAAGCTCACTATGTTACAATCCTTGGATTTATCAAACAATAGCTTAAATGGTCCTATACCAGAATTTTTTATGCAACTGCGGTCACTAAAAGTCTTAAACATAGGAAAAAACAACCTTACAGGATCAATTCCAAGTGGACTCCTTGTGAGGTCAAAAACAGGTTCACTATCACTAAGTGTGGATGATAACCCTAGTCTTTGTACGACGGAATCATGCAAAAAGAAGAATTTGTCTGTACCGCTTATTGCATCGTTTTCAGCATTAATTGTAATCCTCTTGATTTCTCTTGGGGTTTGGAGATTCAGAAGACAAAAAGTTACGTCTTCAAATTCTAAGAAAAAGAGTTCAATGAAATCAAAACATCAAGCATTCAGTTGCAGTGAAATTATCAATATTACTGATAACTTCAAAACTATTATTGGAGAAGGAGGATTTGGAAAAGTTTACTTTGGCACTCTACAAGATCAAACTCAAGTCGCTGTTAAGAGGCTTTCACCATCATCAATGCAAGGATATAAGGAGTTTCAATCAGAGGCACAACTTTTAACGATTGTTCATCATAGAAATTTGGTCTCCCTCCTTGGATATTGTGATGAAGGTGAAATCAAAGCATTGGTTTATGAGTACATGGCCAATGGAAATCTCCAACAACTCTTATTCGGGGAAAATTCAAATATCTTAAAATGGAATGAGAGATTAAACATTGCAGTTGATGCAGCACACGGACTGGATTATCTACATAATGGATGTAAACCACCTATTGTGCATAGAGATTTGAAACCATCCAACATATTACTAGATGATAACATGAGTGCCAAGATAGCAGATTTTGGTCTAAGTAGAGCTTTTGGTAACGATGTTGATTCTCATATATCCACACGCCCTGCTGGTACATTTGGTTATATTGATCCAGAATTTCAGAGAACAGGAAACACGAATAAGAATAATGATATCTATAGCTTTGGGATAATTCTATTTGAATTGATCACTGGCCAGAAAGCACTAGTAAGAGCATCAGGAGAAACCATTCACATACTTCAATGGGTTACTCCCATAGTTAAGAGTGGAGATATTCAAAACATTGTTGATGCGAGGTTGCAGGGTGAATTCAACATCAATTCAGCATGGAAAGTTGTAGAGATAGCTATGTCATGCACTTCACCAAATTCAGTTGAAAGACCAGACACGAGCCAAATATTGGCAGAGCTAAAGGACTGTGTATCTTTGGAGATAGTTCAGAGAAATAGTGGAAGCGCAGCAATATATGAAGTGACTTCTTTATCTATTGGATCAAATACCGCTCCTTTAGCTAGGTAA 2628 0.3661 MKQTMMGMFQHFLSVLLSVLTILVLIQSQDLSGFISIDCGLPEHLSYSDRKTGIGYISDAKFIHTGVSKRLLGNSEKLSQQLEYVRSFPKGVRNCYRINVTSGTKYLIRATFYYGNYDNENYLPQFDLLLGANLWAKVKFTNATYTIRGEIVYTPSLDYIQPCLVNTGKGTPFISAIELRNLNNEVYVTNSAKSVLSVFRRYDLGSITNLNYRYKDDVYDRIWAPSFLYSDWTRLNTSLNNDDLVQKDYELPAIVMSNAITPVNASAPLQFEWEADNVNEQYYAYLHFNEVEKLAENETRAFNITMNDEYWYGPSEIPKYQSVHNIVSTKPLTGATSYLFSLSKTENSTLPPILNAIEVFKVKDFSQSETQQDDVDSITNIKNAYGVARNWQGDPCAPVNYMWEGLNCSINGNNIPRITFLNLSSSGLTGQIASSISKLTMLQSLDLSNNSLNGPIPEFFMQLRSLKVLNIGKNNLTGSIPSGLLVRSKTGSLSLSVDDNPSLCTTESCKKKNLSVPLIASFSALIVILLISLGVWRFRRQKVTSSNSKKKSSMKSKHQAFSCSEIINITDNFKTIIGEGGFGKVYFGTLQDQTQVAVKRLSPSSMQGYKEFQSEAQLLTIVHHRNLVSLLGYCDEGEIKALVYEYMANGNLQQLLFGENSNILKWNERLNIAVDAAHGLDYLHNGCKPPIVHRDLKPSNILLDDNMSAKIADFGLSRAFGNDVDSHISTRPAGTFGYIDPEFQRTGNTNKNNDIYSFGIILFELITGQKALVRASGETIHILQWVTPIVKSGDIQNIVDARLQGEFNINSAWKVVEIAMSCTSPNSVERPDTSQILAELKDCVSLEIVQRNSGSAAIYEVTSLSIGSNTAPLAR 875
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tsu08g00402 875 SMART serkin_6 571 844 IPR000719 GO:0004672|GO:0005524|GO:0006468
Tsu08g00402 875 SUPERFAMILY Protein kinase-like (PK-like) 551 840 IPR011009 -
Tsu08g00402 875 ProSitePatterns Serine/Threonine protein kinases active-site signature. 691 703 IPR008271 GO:0004672|GO:0006468
Tsu08g00402 875 PANTHER LRR RECEPTOR-LIKE KINASE PLANT-LIKE PROTEIN 22 866 - -
Tsu08g00402 875 Gene3D Phosphorylase Kinase; domain 1 543 646 - -
Tsu08g00402 875 ProSiteProfiles Protein kinase domain profile. 571 844 IPR000719 GO:0004672|GO:0005524|GO:0006468
Tsu08g00402 875 Pfam Protein tyrosine and serine/threonine kinase 573 840 IPR001245 GO:0004672|GO:0006468
Tsu08g00402 875 ProSitePatterns Protein kinases ATP-binding region signature. 577 599 IPR017441 GO:0005524
Tsu08g00402 875 Pfam Malectin-like domain 37 362 IPR024788 -
Tsu08g00402 875 Gene3D Ribonuclease Inhibitor 376 500 IPR032675 -
Tsu08g00402 875 Pfam Leucine Rich Repeat 442 460 IPR001611 GO:0005515
Tsu08g00402 875 CDD STKc_IRAK 577 841 - -
Tsu08g00402 875 SUPERFAMILY L domain-like 373 514 - -
Tsu08g00402 875 PANTHER OS07G0107800 PROTEIN-RELATED 22 866 - -
Tsu08g00402 875 Gene3D Transferase(Phosphotransferase) domain 1 647 858 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tsu08g00402 Tsu-Chr8 3887977 3893566 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tsu08g00402 6 872 Receptor kinase-like Gene Family AT2G19230 45.857 0.0 762
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-I-1 Tsu08g00402 Malectin_like 2.1e-110 CL0202
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tsu08g00402 - - mtr:MTR_8g014700 1291.95
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Tsu08g00402 08 3887977 3893566 Tsu08g00402 08 3887977 3893566 ECH