Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tsu08g00390 ATGGGAAAAGCTAGTAGGTGGTTGAAGAATTTGTTAGTAGGAAAcaagaaaaaggaaaaggatTTGAAGGACCACAACAATGACATTAATTCAGGTTTCATGACACCTGACAATACCAAcaaaaaggagaagaaaagaTGGAGTTTTGCAAAACAAGGGAAGAATGTGGAAGTTGAACCAAACATTACTTCAAATTCATCTTCTGATGGTTCCTGGCTTAGATCCTATATTgctgatactgaaaatcagcagAACAAACATGCAATTGCTGTTGCAGCTGCTACGGCGGCCGCTGCTGATGCTGCGGTCGCCGCCGCTCAGGCTGCCGTCGCGGTTGTGAGACTAACTAGTCATGGAAGAGGTACATTGTTTAGTGGAAGTAGAGAGAAATGGGGTGCTGTAAAGATCCAAACTTTCTTCAGAGGCTATTTGGCAAGGAAAGCTCTTAGAGCATTGAAAGGATTGGTTAAGATTCAAGCTCTTGTTAGAGGCTATCTAGTTAGGAAAAGAGCTGCTGCTACTCTTCACAGTATGCAAGCTCTATTTAGAGCTCAAACTTCTGTTAGAACACAAAGAGCTCGGCGATCCTTGAGCAAAGAAAATCGATTCCTACCTGAAATTCTTGCAAGAAAATCTATGGAACGTTGTGATGAAACAAGGAGTGAGTTCCACAGCAAAAGATTACCAACATCATATGATACTTCAATCAATGGATATGATGAACAAAGTCCTAAGATTGTTGAAATTGACACATCATACAAGACAAGAACAAAATCTAGGAGATTTACCTCAACAATGTCTGAATGTGGCGAAGAATTACCACCTTGTCACGCAATTTCATCGTCACCTCTTCCAGGTAGAATCTCAATTCCAGCTGATTGtagaaatcatcatcatcaacaacaacaagacTTCGATTGGTATTTCAACAATCTTGAAGATGCTATTTCTAGGTACCCTACAACACATAACACACCGCGTTTCAATCATTCATCTATGCGTCCAAATATCGCTCCAAACACACCGTCAAAGAGTGTTTGTGGTGACACTTTCTTTAGACCTTATTACTACTCAAATTTCCCTAATTACATGGCTAATACTCAGTCATTTAAGGCTAAACTAAGGTCTCATAGTGCACCTAAACAAAGACCTGAAGTTAAGAAAAGGCTTTCACTCAATGAAATGATGGCTGCAAGAAACAGTATAAGTGGTGTTAGAATGCAAAAGCCACCATCTTCAAATTTTCAGACACAACATGAACAAGAATCTTGGAATTCTTGA 1281 0.3716 MGKASRWLKNLLVGNKKKEKDLKDHNNDINSGFMTPDNTNKKEKKRWSFAKQGKNVEVEPNITSNSSSDGSWLRSYIADTENQQNKHAIAVAAATAAAADAAVAAAQAAVAVVRLTSHGRGTLFSGSREKWGAVKIQTFFRGYLARKALRALKGLVKIQALVRGYLVRKRAAATLHSMQALFRAQTSVRTQRARRSLSKENRFLPEILARKSMERCDETRSEFHSKRLPTSYDTSINGYDEQSPKIVEIDTSYKTRTKSRRFTSTMSECGEELPPCHAISSSPLPGRISIPADCRNHHHQQQQDFDWYFNNLEDAISRYPTTHNTPRFNHSSMRPNIAPNTPSKSVCGDTFFRPYYYSNFPNYMANTQSFKAKLRSHSAPKQRPEVKKRLSLNEMMAARNSISGVRMQKPPSSNFQTQHEQESWNS 426
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tsu08g00390 426 Pfam IQ calmodulin-binding motif 156 170 IPR000048 GO:0005515
Tsu08g00390 426 Pfam IQ calmodulin-binding motif 132 150 IPR000048 GO:0005515
Tsu08g00390 426 ProSiteProfiles IQ motif profile. 129 157 IPR000048 GO:0005515
Tsu08g00390 426 Pfam Protein of unknown function (DUF4005) 325 414 IPR025064 -
Tsu08g00390 426 SMART iq_5 151 172 IPR000048 GO:0005515
Tsu08g00390 426 SMART iq_5 128 150 IPR000048 GO:0005515
Tsu08g00390 426 Gene3D - 132 172 - -
Tsu08g00390 426 ProSiteProfiles IQ motif profile. 153 180 IPR000048 GO:0005515
Tsu08g00390 426 PANTHER - 1 415 - -
Tsu08g00390 426 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 128 171 IPR027417 -
Tsu08g00390 426 MobiDBLite consensus disorder prediction 402 426 - -
Tsu08g00390 426 MobiDBLite consensus disorder prediction 18 42 - -
Tsu08g00390 426 MobiDBLite consensus disorder prediction 405 426 - -
Tsu08g00390 426 PANTHER IQ-DOMAIN 5-RELATED 1 415 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tsu08g00390 Tsu-Chr8 3809485 3811930 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tsu08g00390 1 407 IQD Protein Family AT3G16490 51.923 4.55e-102 307
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Tsu08g00390 08 3809485 3811930 Tsu08g00390 08 3809485 3811930 ECH
Tsu02g05412 02 62618213 62619956 Tsu08g00390 08 3809485 3811930 PCT