Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tsu08g00387 ATGTGGCAAAGAAGCCACAAGTCTTCTTTAGAGGAGGAAAGGAAACTGGAGCTTAGACTTGGTCCACCTGGTGAAGATGAGTCCTACAatgaaaaaaacatgaaaaatgtcaaaaaagaaagagatgaatcaCAACCCTCTTGCACAAATTTGACCAACAAGTCTCAAAAAAGAAATGCAACTAGTCCAGTAGTGGGTTGGCCTCCGATTCGTTCTTTCAGGAAGAACATTGCAAGCGGAAGCTCTTCTAAGTCCCCGACTGAGTCACAACACGCTGTTCAAGACAAGGTTGCCGCTAGCAACAAACCTATTAGCAACTCTGGTAAAGGCTTGTTTGTGAAGATCAATATGGATGGAATTCCCATTGGGAGAAAAGTAGACATCAATGCTTATGATAGCTATGAAAAACTTTCATCTGCTGTTGATGACCTATTTAGAGGTCTCCTTGAAGAGATAAATTTATCTCATGACAACAAGCAAGAGGAAGATAAAGGCATGATGAAAGGTTCATTGATTGGAAGTGGAGAATATACTCTTGTTTATGAAGATAATGAAGGAGACAAGATGCTTGTAGGGGACGTGCCGTGGCACATGTTTGTATCAACAGTGAAGAGATTGCGAGTGTCCAAGAGTTCTGACCTTCCTGCTTTTAACCGTAGTAAGAAAGACTAG 672 0.3943 MWQRSHKSSLEEERKLELRLGPPGEDESYNEKNMKNVKKERDESQPSCTNLTNKSQKRNATSPVVGWPPIRSFRKNIASGSSSKSPTESQHAVQDKVAASNKPISNSGKGLFVKINMDGIPIGRKVDINAYDSYEKLSSAVDDLFRGLLEEINLSHDNKQEEDKGMMKGSLIGSGEYTLVYEDNEGDKMLVGDVPWHMFVSTVKRLRVSKSSDLPAFNRSKKD 223
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tsu08g00387 223 MobiDBLite consensus disorder prediction 46 62 - -
Tsu08g00387 223 MobiDBLite consensus disorder prediction 1 101 - -
Tsu08g00387 223 Gene3D - 105 221 - -
Tsu08g00387 223 ProSiteProfiles PB1 domain profile. 110 211 IPR000270 GO:0005515
Tsu08g00387 223 PANTHER AUXIN-RESPONSIVE PROTEIN IAA26 38 220 - -
Tsu08g00387 223 MobiDBLite consensus disorder prediction 75 101 - -
Tsu08g00387 223 Pfam AUX/IAA family 37 214 IPR033389 -
Tsu08g00387 223 SUPERFAMILY CAD & PB1 domains 102 209 - -
Tsu08g00387 223 PANTHER AUXIN-RESPONSIVE PROTEIN IAA17 38 220 IPR003311 GO:0005634|GO:0006355
Tsu08g00387 223 MobiDBLite consensus disorder prediction 1 45 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tsu08g00387 Tsu-Chr8 3779772 3782937 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tsu08g00387 113 208 B3 DNA Binding Superfamily AT4G23980 34.375 2.04e-13 67.0
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR AUX/IAA Tsu08g00387 AUX_IAA 1.3e-63 CL0072
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tsu08g00387 K14484 - gmx:100305794 240.35
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Tsu08g00387 08 3779772 3782937 Tsu02g05413 02 62634972 62639332 ECH
Tsu08g00387 08 3779772 3782937 Tsu08g00387 08 3779772 3782937 ECH
Tsu02g05413 02 62634972 62639332 Tsu08g00387 08 3779772 3782937 PCT