Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tsu08g00386 ATGGTTAATGTAGGAAAAAACCCCAATTTGAAGTTACTTCAGTTTCTTCTATTTCTGTTTCTATTTTACCTTAATTTCAATAGAGTCAGTTCTTATCAGATGTCAGCTATGAACTGTACAGACACAAGACGTGTTTGTACTTCTTTCTTGGCCTATAAGCGTCAAAAAAACCAAACTTTAGGAGTGATTCAGAGTATGTTTGATGTGTTACCAAGTGATATCACAGTTGAAGGAAATGGTTGGGATTATTTATTCATAAGGAAGAATTGTTCTTGTGCATCTGGTCTCAAGAAATATGTGTCTAATACCACTTACACTGTGAAATCAAATGAAGggtttgttgatgatttggttaTGGATGCATATGATGGGCTTATTTTGCTTCCAAACACTTCAAGGAAAGCAAGGAATGGTGCTGTTATATCATTGAGGTTGTTTTGTGGCTGTTCTAGTGGATTATGGAACTATTTGTTGAGTTATGTGTTGAGAGATGGGGATAGTGTTGAATCTTTGGCTAGTAGATTTGGGGTTAGTATGGATAGTATTGAAGGTGTGAATGGTCTTGATGGTCCTGATAATGTTACTGTCGGTTCACTTTATTACATTCCTCTTGATTCTGTTCCTGGCGACCCTTATCCTCTGAATAATGCTTCTCCACCAGCTTCTGTTCCTACCCCTTCTGTTGATGATTTATCAGGTGATGATGCCAATCATAAGTATCATGTACCCTATGCATTGATCATTGGTGGTTTAGGAGTCGGTCTTGTTCTGATAATATTAGGCATAGTTCTATGCGTTTGCCTGAGATCGTCAAATTGTTATTCTGATTCCAGAAGTCATGAAAAAGATGGCGAGGGAAAGGTCTCTCATAAATTCCATATTCTTCGGAATCCAAGTTTTTTGTGTGGTTCTGGAAGGTACATATGCGGCAAACATGTTGGCCACAAGCAAACAGACGGCGACTCCAGCACTCACACAATTACCGTTCCAAAAGCTTCAACTCTAGGGCCGGACGTATTTGATATGGATAAACCTGTAGTTTTTGCATATGAAGAGATTTTTTCGTCAACCGAAGGCTTCTCTGATTCAAATCTACTTGGACATGGAACATATGGATCTGTCTACTATAGCCTCCTTCGCGACCAGGAAGTTGCCATTAAAAGAATGACGgctacaaaaacaaaagaattcaCATCAGAGATTAAAGTTTTATGCAAGGTTCATCATGCTAATCtgGTAGAGTTGATTGGCTATGCAGCTAGTCATGATGAGCTTTTCCTAGTTTATGAATATGCTCAAAAGGGTTCACTCAGAAGCCATTTGCATGATCCTCAAAATAAGGGTCATTCACCACTATCATGGATCATGAGGGTTCAAATTGCACTTGATGCTGCTAGGGGACTTGAATATATACACGAGCACACGAAAGCTCATTACGTTCACCGAGATATAAAGACAAGCAACATTTTACTTGATGCTTCCTTTAAAGCAAAGATTTCAGATTTTGGATTGGCGAAACTTGTCGGGATAACAAATGAGGGGGATGTTTCAACTACCAAAGTTGTTGGTACATATGGATATCTTGCTCCGGAATACTTGAGTGATGGCCTTGCAACAACCAAAAGTGATGTTTATGCATTTGGTGTTGTTCTTTTTGAGACTATAACCGGAAAGGAGGCCATTATTCGAACAGAAGGCATGATGACAAAAAATCCTGAAAGACGATCACTGGCATCAATAATGTTGGCAGTTCTTAGGAACTCACCTGATTCATTGAGCATGTCAAGCTTGAAAGATTACATTGATCCAAATATGATGAATCTGTATCCCCATGATTGTGTATTTAAGATGGCTTTGCTAGCAAAGCAATGTGTGGACGATGATCCGATCTTACGACCAGATATGAAACAAATAGTGATTTCCATCTCGCAGATTCTTTTATCATCTATTGAGTGGGAAGCAACACTAGCTGGGAATAGCCAAGTATTCAGTGGACTTGTTCAAGGAAGATAg 2013 0.382 MVNVGKNPNLKLLQFLLFLFLFYLNFNRVSSYQMSAMNCTDTRRVCTSFLAYKRQKNQTLGVIQSMFDVLPSDITVEGNGWDYLFIRKNCSCASGLKKYVSNTTYTVKSNEGFVDDLVMDAYDGLILLPNTSRKARNGAVISLRLFCGCSSGLWNYLLSYVLRDGDSVESLASRFGVSMDSIEGVNGLDGPDNVTVGSLYYIPLDSVPGDPYPLNNASPPASVPTPSVDDLSGDDANHKYHVPYALIIGGLGVGLVLIILGIVLCVCLRSSNCYSDSRSHEKDGEGKVSHKFHILRNPSFLCGSGRYICGKHVGHKQTDGDSSTHTITVPKASTLGPDVFDMDKPVVFAYEEIFSSTEGFSDSNLLGHGTYGSVYYSLLRDQEVAIKRMTATKTKEFTSEIKVLCKVHHANLVELIGYAASHDELFLVYEYAQKGSLRSHLHDPQNKGHSPLSWIMRVQIALDAARGLEYIHEHTKAHYVHRDIKTSNILLDASFKAKISDFGLAKLVGITNEGDVSTTKVVGTYGYLAPEYLSDGLATTKSDVYAFGVVLFETITGKEAIIRTEGMMTKNPERRSLASIMLAVLRNSPDSLSMSSLKDYIDPNMMNLYPHDCVFKMALLAKQCVDDDPILRPDMKQIVISISQILLSSIEWEATLAGNSQVFSGLVQGR 670
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tsu08g00386 670 Gene3D Phosphorylase Kinase; domain 1 336 431 - -
Tsu08g00386 670 PANTHER BNAA06G02020D PROTEIN 37 670 - -
Tsu08g00386 670 Gene3D Transferase(Phosphotransferase) domain 1 433 656 - -
Tsu08g00386 670 ProSitePatterns Protein kinases ATP-binding region signature. 366 387 IPR017441 GO:0005524
Tsu08g00386 670 SMART serkin_6 360 646 IPR000719 GO:0004672|GO:0005524|GO:0006468
Tsu08g00386 670 ProSitePatterns Serine/Threonine protein kinases active-site signature. 479 491 IPR008271 GO:0004672|GO:0006468
Tsu08g00386 670 ProSiteProfiles LysM domain profile. 158 202 IPR018392 -
Tsu08g00386 670 CDD LysM 159 202 IPR018392 -
Tsu08g00386 670 SUPERFAMILY Protein kinase-like (PK-like) 339 639 IPR011009 -
Tsu08g00386 670 SUPERFAMILY LysM domain 159 203 IPR036779 -
Tsu08g00386 670 SMART LysM_2 159 203 IPR018392 -
Tsu08g00386 670 Pfam Protein tyrosine and serine/threonine kinase 364 639 IPR001245 GO:0004672|GO:0006468
Tsu08g00386 670 PANTHER CHITIN ELICITOR RECEPTOR KINASE 1-RELATED 37 670 IPR044812 GO:0019199|GO:0045087
Tsu08g00386 670 Pfam LysM domain 160 197 IPR018392 -
Tsu08g00386 670 Gene3D LysM domain 155 208 IPR036779 -
Tsu08g00386 670 ProSiteProfiles Protein kinase domain profile. 360 647 IPR000719 GO:0004672|GO:0005524|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tsu08g00386 Tsu-Chr8 3765750 3771010 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tsu08g00386 37 670 Receptor kinase-like Gene Family AT1G51940 67.290 0.0 837
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LysM Tsu08g00386 PK_Tyr_Ser-Thr 4.5e-48 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tsu08g00386 - - gmx:100796989 1085.48
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Tsu08g00386 08 3765750 3771010 Tsu08g00386 08 3765750 3771010 ECH