Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tsu08g00368 ATGTCAATGGCCTGCAAGGATGGTAGTAATAAGCATTTAATGGATAATGGTAAGTATGTCCGTTATACACCTGAGCAGGTTGAAGCTCTTGAAAGACTTTATCATGATTGTCCTAAACCTAGTTCCATTCGAAGACAACAACTTATTAGGGAGTGTCCTATTCTCTCTAATATTGAGCCAAGGCAAATCAAAGTTTGGTTCCAAAATAGAAGATGTAGAGAGAAGCAGAGGAAAGAATCTTTTCGGCTGCAAGGTGTGAATAGAAAGTTGACAGCTATGAACAAGTTGCTGATGGAGGAAAATGATAGGTTGCAGAAGCAGGTGTCTCATCTGGTGTATGAGAATGGCTATTTTCGTCAAAACACCCAAAATGCAACCAAAGACACGAGTTGTGAGTCAGTTGTGACTAGTGGTCAGCACAATATGACTAGTCAACATCCCCCAAGGGATGCAAGTCCTGCAGGgCTTTTGTCCATTGCAGAAGAAACTTTAGCAGAATTTCTTTCAAAGGCTACTGGAACTGCTGTTGAGTGGGTCCAAATGCCTGGAATGAAGCCTGGTCCGGATTCCATTGGAATCATTGCTATTTCTCATGGTTGCACTGGTGTGGCAGCAAGAGCTTGCGGTCTAGTGGGACTAGAGCCCACTAGGGTTGcggaaatcctcaaagatcgtCCTTTGTGGTTTCGTGATTGCCGAGCTGTTGATATTGTCAATGTGCTGCCCACTGCAAATGGTGGAACCATTGAGCTGCTTTATATGCAGCTATATGCACCAACCACATTGGCACCTGCTCGAGATTTCTGGTTGTTACGTTACACTTCTGTTGTAGAAGATGGCAGCCTAGTGATCTGTGAGAGGTCTCTTAAAAATACTCAAAATGGTCCAAGCATGCCTCCTGTGCCGCATTTTGTTAGAGCAGACATGCTGCCTAGTGGGTACCTGATAAGACCTTGTGAAGGAGGTGGTTCCATCATCCACATTGTTGATCATATGGACTTGGAGCCATGGAGTGTGCCAGAAGTACTGCGTCCACTATATGAATCACCAACAGTGCTGGCTCAGAAGACTACTATGGCGGCCTTACGCCATCTAAGGCAGATTTCGCATGAAGTTTCTCAGCCCAACGTCACTGGGTGGGGTAGACGACCAGCAGCTCTGCGTGCACTTAGCCAGAGATTGAGCCGGGGTTTCAATGAGGCACTCAATGGGTTTACTGATGAAGGATGGACTATGATGGGCAATGATGGTGTAGATGATGTTACTATTCTAGTGAATTCATCACCTGACAAGTTAATGGGTCTGAATCTTTCCTTTGGCAATGGATTCCCGTCTGTCAGTAATGCAGTGTTATGTGCCAAGGCCTCAATGCTATTACAGAATGTACCTCCAGCCATTCTCCTAAGGTTCCTGCGGGAACACAGATCAGAATGGGCAGATAATAACATGGATGCATACACAGCTGCTGCCATTAAAGTTGGTCCTTGTAGCCTAACAGGATCTCGCATAGGAAATTATGGGGGTCAAGTTATACTCCCGCTAGCACACACTATTGAGCACGAGGAGTTTTTGGAAGTCATCAAGTTGGACGGTGTTGCCCATTCTCCTGAAGAGACAATGATGGCCAGAGAATTGTTTCTGTTGCAACTCTGCAGCGGGATGGATGAGAATGCTATTGGCACCTGTGCAGAACTTATATTTGCTCCAATTGATGCTTCATTTGCTGATGATGCTCCACTTCTACCTTCTGGATTTCGCATCATTCCTCTTGAATctggaaagGAAGCCTCCAGTCCTAATCGCACTCTTGACCTTGCATCTGCCCTTGACGTTGGTGGCCCTACTGGAAACCGAGCTTCAAGTGATAATGCAGGAAATTCTGGCTGTGTGAGATCTGTGATGACAATAGCATTTGAATTTGCATTTGAAAGTCATATGCAAGAGAATGTAGCATGCATGGCACGTCAATATGTTCGCAGTATTATATCATCAGTCCAAAGGGTAGCATTAGCACTTTCTCCTTCTCATCTGAGTTCACATGCTGGGCTGAGGTCACCTTTAGGTACTCCTGAAGCACAAACCCTTGCTCATTGGATCTGCAACAGTTATAGGTGCTACTTGGGTGTGGATCTACTTAAATCTAATAACGAAGGAAAAGAACCTCTACTCAAGTCCTTGTGGCATCACTCAGATGCTGTATTATGCTGCACACTAAAGGCATTGCCGGTGTTCACTTTCTCAAACCAAGCAGGGCTTGACATGCTGGAAACTACCCTAGTTGCATTACAAGATATAACTTTGgagaaaatatttgatgatCATGGTCGAAAAACACTCTTCTCTGAGTTTCCCCAGATTATTCAACAGGTCTAG 2373 0.4408 MSMACKDGSNKHLMDNGKYVRYTPEQVEALERLYHDCPKPSSIRRQQLIRECPILSNIEPRQIKVWFQNRRCREKQRKESFRLQGVNRKLTAMNKLLMEENDRLQKQVSHLVYENGYFRQNTQNATKDTSCESVVTSGQHNMTSQHPPRDASPAGLLSIAEETLAEFLSKATGTAVEWVQMPGMKPGPDSIGIIAISHGCTGVAARACGLVGLEPTRVAEILKDRPLWFRDCRAVDIVNVLPTANGGTIELLYMQLYAPTTLAPARDFWLLRYTSVVEDGSLVICERSLKNTQNGPSMPPVPHFVRADMLPSGYLIRPCEGGGSIIHIVDHMDLEPWSVPEVLRPLYESPTVLAQKTTMAALRHLRQISHEVSQPNVTGWGRRPAALRALSQRLSRGFNEALNGFTDEGWTMMGNDGVDDVTILVNSSPDKLMGLNLSFGNGFPSVSNAVLCAKASMLLQNVPPAILLRFLREHRSEWADNNMDAYTAAAIKVGPCSLTGSRIGNYGGQVILPLAHTIEHEEFLEVIKLDGVAHSPEETMMARELFLLQLCSGMDENAIGTCAELIFAPIDASFADDAPLLPSGFRIIPLESGKEASSPNRTLDLASALDVGGPTGNRASSDNAGNSGCVRSVMTIAFEFAFESHMQENVACMARQYVRSIISSVQRVALALSPSHLSSHAGLRSPLGTPEAQTLAHWICNSYRCYLGVDLLKSNNEGKEPLLKSLWHHSDAVLCCTLKALPVFTFSNQAGLDMLETTLVALQDITLEKIFDDHGRKTLFSEFPQIIQQV 790
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tsu08g00368 790 CDD homeodomain 18 78 IPR001356 GO:0003677
Tsu08g00368 790 Pfam Homeodomain 18 76 IPR001356 GO:0003677
Tsu08g00368 790 CDD START_ArGLABRA2_like 153 368 - -
Tsu08g00368 790 Pfam START domain 159 367 IPR002913 GO:0008289
Tsu08g00368 790 SMART START_1 158 368 IPR002913 GO:0008289
Tsu08g00368 790 ProSiteProfiles START domain profile. 149 349 IPR002913 GO:0008289
Tsu08g00368 790 CDD bZIP 70 109 - -
Tsu08g00368 790 PANTHER HOMEOBOX-LEUCINE ZIPPER PROTEIN ATHB-14 1 789 IPR044830 GO:0003700
Tsu08g00368 790 Coils Coil 87 107 - -
Tsu08g00368 790 Gene3D - 195 371 IPR023393 -
Tsu08g00368 790 PANTHER CLASS III HD-ZIP PROTEIN CNA1 1 789 - -
Tsu08g00368 790 SUPERFAMILY Bet v1-like 158 368 - -
Tsu08g00368 790 Gene3D - 10 82 - -
Tsu08g00368 790 SMART HOX_1 15 81 IPR001356 GO:0003677
Tsu08g00368 790 ProSiteProfiles 'Homeobox' domain profile. 13 77 IPR001356 GO:0003677
Tsu08g00368 790 Pfam MEKHLA domain 694 789 IPR013978 -
Tsu08g00368 790 SUPERFAMILY Homeodomain-like 18 79 IPR009057 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tsu08g00368 Tsu-Chr8 3587121 3595506 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tsu08g00368 1 790 Homeobox Transcription Factor Family AT1G52150 82.893 0.0 1374
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF HB-HD-ZIP Tsu08g00368 START 1.1e-52 CL0209
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tsu08g00368 K09338 - gmx:100800165 1470.29
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Tsu08g00368 08 3587121 3595506 Tsu08g00368 08 3587121 3595506 ECH
Tsu02g05432 02 62827551 62834944 Tsu08g00368 08 3587121 3595506 PCT