Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tsu08g00367 ATGGAAGCACCGGATTACTTTGTCGGTGGCTACTACGGTGCCGGAGTTCACGGCGGAATCGACCAATTCTCACCGGAAAAGCGTCACGGTCACGGTGCTGACCAGAAGCCTTGTGAGTCTTTTGCCATTGATGACTTACTTGATTTCTCCAATGCTGATGCTATTATGTCTGATGGTTTCTTCGACAATGTCGCCGGAAATTCCACCGACTCTTCCAATGTCACCGCCGTTGATAGCTGTAACTCGTCTGGCTCCGGTGGTGATAATCGCTTTGGAGGCACAATTGTTCCGTATGGTTTCTCCGGTGATGTTCAACTCACCGGTGAACTCTGTGTTCCGTATGATGAAATGGCGGAATTGGAATGGCTGTCGAATTTCGTGGAAGATTCATACTCCGCCGAAGAGGAATTGAAAACACTGCAACTTCTCTCCGGTGCCGGCGCCGTCAAACCACAAACACCGGAGTCTTCCTCTTCAACCGACACTCTCCCAGCGTTTTCATCTGACGAGAATGCTCGGAACGTTAACGCGTCGTTTCTCCGACCGGAAACACCACTCCCTGGAAAAGCACGAAGCAAACGCTCACGCGCTGCACCAGGCGATTGGTCCACGCGCCTACTTCATATCCCTGACGCGCCACCACAACAGATGAAAATTTGTCAATTGAAAAAACGTGAGGATCCTAATGTAGAATGTTCTGGAAGGAAATGTCTCCACTGCGGCACCGATAAAACGCCGCAGTGGAGAACCGGTCCAATGGGACCAAAAACACTTTGTAATGCTTGTGGTGTTAGGTTTAAGTCCGGTAGGTTAGTGCCGGAGTATCGACCGGCGGCGAGTCCAACTTTTGTATCGGCGAAGCATTCAAATTCACATAGGAAAGTTTTGGAACTTAGGAGACAGAAAGAGATGCAAAGATCACAGCATCAACAACTTCTGAGTCACAGTTCAATTTTCGGCGTATCATCTAACGGTGGAGATGACTTCAtcaattatcatcatcatcatcattgtgGGCCAGAATTTAGGCATGTTATCTAG 1041 0.4784 MEAPDYFVGGYYGAGVHGGIDQFSPEKRHGHGADQKPCESFAIDDLLDFSNADAIMSDGFFDNVAGNSTDSSNVTAVDSCNSSGSGGDNRFGGTIVPYGFSGDVQLTGELCVPYDEMAELEWLSNFVEDSYSAEEELKTLQLLSGAGAVKPQTPESSSSTDTLPAFSSDENARNVNASFLRPETPLPGKARSKRSRAAPGDWSTRLLHIPDAPPQQMKICQLKKREDPNVECSGRKCLHCGTDKTPQWRTGPMGPKTLCNACGVRFKSGRLVPEYRPAASPTFVSAKHSNSHRKVLELRRQKEMQRSQHQQLLSHSSIFGVSSNGGDDFINYHHHHHCGPEFRHVI 346
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tsu08g00367 346 MobiDBLite consensus disorder prediction 150 178 - -
Tsu08g00367 346 MobiDBLite consensus disorder prediction 148 208 - -
Tsu08g00367 346 CDD ZnF_GATA 236 283 IPR000679 GO:0006355|GO:0043565
Tsu08g00367 346 ProSitePatterns GATA-type zinc finger domain. 237 262 IPR000679 GO:0006355|GO:0043565
Tsu08g00367 346 SMART GATA_3 231 281 IPR000679 GO:0006355|GO:0043565
Tsu08g00367 346 Pfam GATA zinc finger 237 270 IPR000679 GO:0006355|GO:0043565
Tsu08g00367 346 PIRSF Txn_fac_GATA_plant 26 325 IPR016679 GO:0003677|GO:0005634|GO:0045893
Tsu08g00367 346 PANTHER GATA TRANSCRIPTION FACTOR 1 346 - -
Tsu08g00367 346 ProSiteProfiles GATA-type zinc finger domain profile. 231 267 IPR000679 GO:0006355|GO:0043565
Tsu08g00367 346 Gene3D - 232 313 IPR013088 GO:0006355|GO:0008270
Tsu08g00367 346 PANTHER GATA TRANSCRIPTION FACTOR 9 1 346 - -
Tsu08g00367 346 SUPERFAMILY Glucocorticoid receptor-like (DNA-binding domain) 234 294 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tsu08g00367 Tsu-Chr8 3566258 3567830 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tsu08g00367 39 346 C2C2-Gata Transcription Factor Family AT4G32890 48.589 1.54e-85 259
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2C2-GATA Tsu08g00367 GATA 6.9e-16 CL0167
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tsu08g00367 - - cam:101510199 614.764
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Tsu08g00367 08 3566258 3567830 Tsu08g00367 08 3566258 3567830 ECH