Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tsu08g00364 atgacAACGacgacgacaacaacaacatctTCGGAAACAACCACAACCTCAAACTCCTCAACCTCTTCAACATCTTCAACCCAAAATCAAAGCCCAAAAAAGGCGGCCCAAAAGCCCAAAGACACTAAACACCCAACTTACCATGGTGTTAGAAAACGTAATTGGGGTAAATGGGTTTCAGAAATTCGTGAACcaagaaaaaaatcaagaatttgGTTAGGAACATTCTCAACGCCAGAAATGGCAGCAAGAGCACATGATGTAGCAGCTTTAACAATCAAAGGAAAAACCGCAATACTAAATTTTCCTCATTTATCAAACATGTTACCTAGACCTGCCACGTCAGCACCACGTGACATTCAAGCCGCAGCTACTGCAGCAGCTGCTATGGTTGACTTTGATGATGATGTGCACGTCACAACAGAACAACAACAATGTtgttgtgatgatgatgaatctgaGGAACAAGAACTTAGTCAGATTGTTGAACTTCCTAAaattaatgaagaaggtgaagatgACTCGGTTGTTGACTCAGTTAATGCTGAGTTTGTTTTGCTTGATGACTCGGTAATTGATAGTAGTAATTGGGTTTATCATCTTTCTCATGAGTCAATTGGGTTTGAAGGAATTGAATTCTATTCAACTTTttctgatgatttttttttacccatTTGGGATTAA 684 0.3363 MTTTTTTTTSSETTTTSNSSTSSTSSTQNQSPKKAAQKPKDTKHPTYHGVRKRNWGKWVSEIREPRKKSRIWLGTFSTPEMAARAHDVAALTIKGKTAILNFPHLSNMLPRPATSAPRDIQAAATAAAAMVDFDDDVHVTTEQQQCCCDDDESEEQELSQIVELPKINEEGEDDSVVDSVNAEFVLLDDSVIDSSNWVYHLSHESIGFEGIEFYSTFSDDFFLPIWD 227
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tsu08g00364 227 ProSiteProfiles AP2/ERF domain profile. 46 103 IPR001471 GO:0003700|GO:0006355
Tsu08g00364 227 PANTHER AP2 DOMAIN CLASS TRANSCRIPTION FACTOR 10 220 - -
Tsu08g00364 227 MobiDBLite consensus disorder prediction 1 35 - -
Tsu08g00364 227 MobiDBLite consensus disorder prediction 1 51 - -
Tsu08g00364 227 Pfam AP2 domain 46 95 IPR001471 GO:0003700|GO:0006355
Tsu08g00364 227 Gene3D AP2/ERF domain 46 104 IPR036955 GO:0003700|GO:0006355
Tsu08g00364 227 SMART rav1_2 46 109 IPR001471 GO:0003700|GO:0006355
Tsu08g00364 227 PRINTS Ethylene responsive element binding protein signature 47 58 IPR001471 GO:0003700|GO:0006355
Tsu08g00364 227 PRINTS Ethylene responsive element binding protein signature 69 85 IPR001471 GO:0003700|GO:0006355
Tsu08g00364 227 SUPERFAMILY DNA-binding domain 46 104 IPR016177 GO:0003677
Tsu08g00364 227 PANTHER ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR ERF042-RELATED 10 220 - -
Tsu08g00364 227 CDD AP2 47 105 IPR001471 GO:0003700|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tsu08g00364 Tsu-Chr8 3530235 3531095 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tsu08g00364 16 188 AP2-EREBP Transcription Factor Family AT5G11590 50.000 1.08e-51 166
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2/ERF-ERF Tsu08g00364 AP2 3.4e-13 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tsu08g00364 K09286 - gmx:100804056 207.223
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Tsu08g00364 08 3530235 3531095 Tsu08g00364 08 3530235 3531095 ECH