Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tsu08g00354 ATGGCTGAGCAAATTCCATATGGTGTTGTTGCAAGCCTCATTGACAGGTTGGCTTCTGCAGCCTTTCGTGAATTTGGACGGATTTATGATGTTATGGATCAGTTGAAAAGGCTTACCAAAACAATTGAATCTGTCAGAGCTGTGCTCCTTGACGCCGAGGAGAAAGAACAACAAAATCATGCCGTACAAATCTGGATAAGAAGACTCAAAGATGATGTGCTTCATCCTGTTGATGACTTGCTAGATAAATTTGTTATTGAAGATATGAGAcacaaaatgaatgaaaatcCTAAGAAGAAAGTGACACAGGTACTTCATTCCATATCtccaaataaaattgtttttcgcCGTAAAATGGCTGGTGagattgaaaaaatacaaaaaaaaattaatgatgtgATGAAAGATATGTCCGAGTTGAATCTAAACTCAAATGTTGTGGTGGTTGATCAAAATTATAGTGTAAAGAGGGAGAGTAGTTCTTTTGTGTTACAATCAGATATCATTGGAAGACAAGATGATAAAAGTGAGATTATAAGCTTGTTGAGACAACCAAATGGAAATCAAAATGTCTCTGTGTTTGCTATTGTTGGAATTGGTGGTTTGGGAAAGACAGCTGTTGCTCAATTAGTATACAATGATGTCGAATTAAAAAGAGATTTTGAAAAGACTATGTGGGTGTGTGTTGCCGATAACTTTGATGTAAAAGATATTGTAAAGAAAATGTTAAAGTTATTAACCAATGAGAAAATTGATGATACATTGTCATTAGAAAACCTGCAAAATATGCTTCGTGACAATTTAGCTGGTAAACGATACTTGCTAGTTTTAGATGACATTTGGAATGAGAGCTATGAAAAATGGGCTCAATTGAGAACTTATTTGACATGCGGTGCTCAAGATAGTAAGATTGTAGTGACAACTCGTAATAAAATTGTGGCACAAACCATGGGTGTAAGTATCCCTTATGTTTTGAATGGTTTGACTCCAGAAGAATCTTGGAATTTGTTGAAGAACGTCATTACATATGGGGATGAGTTCAAAAGAGTGGACAAAACTCTTGAATCAATCGGTAAGAAGATAGCTGAAAAGTGTTGCGGAGTTCCACTAGCAATCAGAACACTAGGAGGTCTATTACAAGGTAAAAGTGAAGAAAGGGAATGGATTGATGTTTTACAAGGTGACTTTTGGAAGTtatgtgaagatgaagaaagcATTATGCCAGTGCTGAAATTGAGTTACCAAAACTTGTCCCCTCAATTAAGACAATGCTTTGCTTATTGCTCTTTATATCCTAAGGATTGGGAGATACAAACGGATGAATTGATTCAAATGTGGATGGCACAAGGTTATCTTGAATGTTTTACTGTCGGTAAAAAATTCGTGGATATTTTGTTGATGAAGTCATTTTTTCAAGATGCTAAATCTAATATACTTGGTAATGTATCTAGCTTCAAAATGCATGATTTAATACATGATATTGCAACGCAAGTAGCTGGTAATGATTGTTGTTACTTAGATAGCGACGAAAAGAAATTTATAGGAAGTCCCGTGCATGTAATGTTGGAAAGTGATGCTATCGGATTGTTGGAGTCCATAGATGCAAGAAGAATGCGAACTTTGATTTTGTTGTCCAACAATTCAAAGACTATGAATGATAATGAATTGATTgttatttcaaaattcaaatacttACGTGTTTTGAAGCTATCGTGTTGTTATTTGAGTAGGTTGTGCAATCCATTTGTAAAATTGAAGCATTTAAGATATCTTAGCTTACATGACTGTGAAAGATCGGAAAGTCTCTCCAAATCCAAAAGCTCCAAATCCAAAAGCAATCTTGTTTGCTTGCAAACACTAATATTGAAGGCATGTAAAAAGGTTGAAATTTCTACAAAAGATGTCTCAAAGTTAATCAATTTGAAGCATCTTGAAATTACTGGAATTAAAATTCTTGAAGAGAAAAAGACAACATCTGGTTTTGGAAGATTAGGCACAGGACAGCAATACAAGGGTgtaaatttttcaaattggaTTTCTCCACTTGAAAATATTGTtcaaatttctctctcttcttgtAAAGGTTTAAAGTATCTCCCACCAATGGAACGTCTTATGTTCCTTAAGTCTATCCATATAAGTTACCTTGATGAACTCGAGTACATATATTATGAAGAGCCTCTTTTGTCTGAAACATTCTTCCCATCTTTAGAAAGTCTCAATTTAAGCAATTGCAATAAGTTGAGGGGATGGTGGAGGATGAGTGATGATGCCAATGATGGTAACTCATCACAGGTGCATAATCTCTCATTTCCTCCAtgtctttcttttttaacaatCATTGAATGTCGAATGTTGACTCGCGTGCCTACTTTTCCAAATCTTGACAATGGATTGAGATTCTTGGATTCCAATATGGAGACATTGGAAGCAACATTAAACATTATAAGTTCAAAATGTTCAATTGAATACCCTCCTCTTTCCAAGCTAAAACACTTGTACCTCGGAAAAGTTGATCTGGATATGCAAAAACTCCCAGTAAATTGGGTGAAAAATCTAACTTCTCTAAAGCATCTTTGCTTTATGAAGCTTCCAGATCAAACATTTCAAGAAATTGGAACTTGGTTTAATGAAGACGACTTCAACTATCTTCCTTCCCtccaaaatattcatatttcatCTTGTTTAGATCTAAAGACATTGCCTGGTTGGATTTTTAACCTCTCCTCAGTGCAGCATATCACCATTGAGTACTGCAAAAGTATAGCTTCCCTGCCTGAAGAAATGCCTCTCCTTGCCAAATTACATACCCTAGAAATCATTCGATGTCCCGACTTAATTGAAGAATGTGAGACACAAACAAGTGAAACATGGCACAAAATTGCTCACATCCCAAACATAATCTTAAAGAGATCTTCTTATTAA 2925 0.335 MAEQIPYGVVASLIDRLASAAFREFGRIYDVMDQLKRLTKTIESVRAVLLDAEEKEQQNHAVQIWIRRLKDDVLHPVDDLLDKFVIEDMRHKMNENPKKKVTQVLHSISPNKIVFRRKMAGEIEKIQKKINDVMKDMSELNLNSNVVVVDQNYSVKRESSSFVLQSDIIGRQDDKSEIISLLRQPNGNQNVSVFAIVGIGGLGKTAVAQLVYNDVELKRDFEKTMWVCVADNFDVKDIVKKMLKLLTNEKIDDTLSLENLQNMLRDNLAGKRYLLVLDDIWNESYEKWAQLRTYLTCGAQDSKIVVTTRNKIVAQTMGVSIPYVLNGLTPEESWNLLKNVITYGDEFKRVDKTLESIGKKIAEKCCGVPLAIRTLGGLLQGKSEEREWIDVLQGDFWKLCEDEESIMPVLKLSYQNLSPQLRQCFAYCSLYPKDWEIQTDELIQMWMAQGYLECFTVGKKFVDILLMKSFFQDAKSNILGNVSSFKMHDLIHDIATQVAGNDCCYLDSDEKKFIGSPVHVMLESDAIGLLESIDARRMRTLILLSNNSKTMNDNELIVISKFKYLRVLKLSCCYLSRLCNPFVKLKHLRYLSLHDCERSESLSKSKSSKSKSNLVCLQTLILKACKKVEISTKDVSKLINLKHLEITGIKILEEKKTTSGFGRLGTGQQYKGVNFSNWISPLENIVQISLSSCKGLKYLPPMERLMFLKSIHISYLDELEYIYYEEPLLSETFFPSLESLNLSNCNKLRGWWRMSDDANDGNSSQVHNLSFPPCLSFLTIIECRMLTRVPTFPNLDNGLRFLDSNMETLEATLNIISSKCSIEYPPLSKLKHLYLGKVDLDMQKLPVNWVKNLTSLKHLCFMKLPDQTFQEIGTWFNEDDFNYLPSLQNIHISSCLDLKTLPGWIFNLSSVQHITIEYCKSIASLPEEMPLLAKLHTLEIIRCPDLIEECETQTSETWHKIAHIPNIILKRSSY 974
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tsu08g00354 974 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 150 428 IPR027417 -
Tsu08g00354 974 PANTHER DISEASE RESISTANCE PROTEIN RP 34 947 IPR044974 GO:0006952
Tsu08g00354 974 Gene3D Ribonuclease Inhibitor 536 795 IPR032675 -
Tsu08g00354 974 Gene3D Ribonuclease Inhibitor 796 962 IPR032675 -
Tsu08g00354 974 Pfam NB-ARC domain 172 416 IPR002182 GO:0043531
Tsu08g00354 974 PANTHER OS05G0414200 PROTEIN 34 947 - -
Tsu08g00354 974 PRINTS Disease resistance protein signature 732 748 - -
Tsu08g00354 974 PRINTS Disease resistance protein signature 365 379 - -
Tsu08g00354 974 PRINTS Disease resistance protein signature 193 208 - -
Tsu08g00354 974 PRINTS Disease resistance protein signature 267 281 - -
Tsu08g00354 974 Coils Coil 123 143 - -
Tsu08g00354 974 Pfam Rx N-terminal domain 9 97 IPR041118 -
Tsu08g00354 974 Gene3D - 414 498 IPR036388 -
Tsu08g00354 974 Gene3D - 9 123 - -
Tsu08g00354 974 SUPERFAMILY L domain-like 486 964 - -
Tsu08g00354 974 Coils Coil 35 55 - -
Tsu08g00354 974 CDD RX-CC_like 7 135 IPR038005 -
Tsu08g00354 974 Gene3D - 327 413 IPR042197 -
Tsu08g00354 974 Gene3D - 151 321 IPR027417 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tsu08g00354 Tsu-Chr8 3416581 3419599 Dispersed/Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tsu08g00354 190 498 WRKY Transcription Factor Family AT5G45050 24.765 2.52e-10 62.8
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tsu08g00354 - - mtr:MTR_8g027540 1121.3