Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tsu08g00348 atggaaaatcGTCAAAGAATAACACTTTACGACCAAATGATTTCTGGCAACACAAGTAACAACACAAGAATCTCACTTGCTAGTTTAATTCAAAACGATGCCGTTTTAACCAACCAAAAAACCCCAAACCAAACACTCTTAGAAATCATACGAGAAAACGACccaaacaacaataacaacgTTGTTAATGTTAACAACAACAATCGAAAACCGTGGAAAGGTTTTAAGGAATTACTTCGTTTAAAACGTCGTAACTCGGAAGATTCAACTCACCAACAACAAAACGACGCCGTTCGAGATGATGTTGTGAACAATTCCGATCTGACAGAGTTGCTTGCCGGCGGTGAGTTTTCTGACGAGGAAATTAACGTTAATAATTCGGAGACAGCGGCGCAGGTTAGTATGTCGTTGATGGATTTGTTGGAAGAGAGTGAAATTGAATTGGATCGAAGTagtgatgttgatgatgacGTGGATGAGAATCATGAAGAAGAAGTAGAAGAAgaggaaagagaagaagggaATGTTAAGGTGGAACACAATTGTTGCGTGTGTATGGTGAGGCATAAAGGTGCAGCGTTTATACCATGTGGACACACGTTCTGCAGAATGTGTTCAAGAGAGCTTTGGGTTAGTAGAGGGAATTGTCCTCTTTGCAATCATTTTATATTAGAAGTTCTTGATATTTTCTAA 693 0.3535 MENRQRITLYDQMISGNTSNNTRISLASLIQNDAVLTNQKTPNQTLLEIIRENDPNNNNNVVNVNNNNRKPWKGFKELLRLKRRNSEDSTHQQQNDAVRDDVVNNSDLTELLAGGEFSDEEINVNNSETAAQVSMSLMDLLEESEIELDRSSDVDDDVDENHEEEVEEEEREEGNVKVEHNCCVCMVRHKGAAFIPCGHTFCRMCSRELWVSRGNCPLCNHFILEVLDIF 230
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tsu08g00348 230 MobiDBLite consensus disorder prediction 147 172 - -
Tsu08g00348 230 CDD RING-HC 182 219 - -
Tsu08g00348 230 SMART ring_2 182 219 IPR001841 -
Tsu08g00348 230 Pfam Zinc finger, C3HC4 type (RING finger) 179 224 - -
Tsu08g00348 230 SUPERFAMILY RING/U-box 181 226 - -
Tsu08g00348 230 ProSiteProfiles Zinc finger RING-type profile. 182 220 IPR001841 -
Tsu08g00348 230 PANTHER OS01G0917900 PROTEIN 123 230 - -
Tsu08g00348 230 PANTHER OS01G0917900 PROTEIN 3 106 - -
Tsu08g00348 230 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 154 230 IPR013083 -
Tsu08g00348 230 PANTHER OS01G0917900 PROTEIN 3 106 - -
Tsu08g00348 230 PANTHER OS01G0917900 PROTEIN 123 230 - -
Tsu08g00348 230 Coils Coil 159 179 - -
Tsu08g00348 230 MobiDBLite consensus disorder prediction 84 103 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tsu08g00348 Tsu-Chr8 3383973 3385056 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tsu08g00348 3 230 C3H Transcription Factor Family AT3G25030 36.364 9.92e-38 130
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tsu08g00348 - - cam:101511225 285.034