Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tsu08g00346 ATGGCTTTCATAAGTCATAACATAAATCACTTGTTCATTACTTTCCTCGTACTATTTTGTACATTTTATTCATGTTATAGTTCAGTCAACGACACAATTACATCATCCAAATCACTCAAAGACAAAGAGACAATAacctcaaacaacacaaacttCAAGCTAGGATTTTTCAGCCCATTAAATTCAACCAACCGTTACTTAGGAATTTGGTACATCAATGAAACCAACAACATATGGATTGCAAACAGAGATCAACCTCTTAAAGATTCATCAGGAATAGTCACAATTGACAAATATGGAAATCTTGTAATATTTAACAATCAAAAGGGTATCATAATTTGGACAACAAATATTTCAGATTCAACAAATTCAACAGCTCAACTTGATGATTTTGGAAACTTGATATTGAGAGACATCAATTCTGGAGCAACAATTTGGGATAGTTTCTCACACCCAGCAGATGCAGGTGTTCCAACAATGAAAATTTCTATTAACAAAGTAACAGGTAAGCAAATAGCTTTTGTATCAAGAAAAAGTGACAATGATCCTTCTTCGGGACATTTTTCGATTAGTCTTGAAAGATTGGGTGCCCCAGAAGTTTTTATTTGGcatgataaaaatattcattggAGATCTGGTCCATGGAATGCAATAGGTTTTCTCGGATCGCCAGTAAAGTTAGCCGAGTATTTATCCGGTTGGAATTTAGTTGTCGCCAAAGAAGAAACTTACTTAATTTACAATTTCATAGACAAAACTATATTTGCAATTCTCTCGTTGACACCACATGGAAAACTTAAGTTGGTTGAGTATAAGAATAAAAAGgtaattgttaatattactgAGGATAAAAATGAGTGtgatttttatggaaaatgtgGGCCATTTGGGAATTGTGATAATTCTAGTGTACCAATTTGTAGTTGTTTTGAGGGGTTTGAGCCAAAGAATTTGTCTGAATGGCGTTCAAGTAATTGGACTAGTGGTTGTGTGAGGAAAGAAGGATTTAACTTGAAGTGTGAGATGTTGAATAATGGATCAAGTGAAGTTAAACAAGATGGTTTTTTGGTGAAACATAATATGAAAGTTCCTGATTATATTGAAATATCAGTTGGTAATCAAAACAAGTGTGAAATAGATTGTTTGGCAAATTGTTCTTGTTTGGCACATGCATACGATCCTTACATAGGTTGTATGTATTGGAGTCGAGAGTTAATTGATTTACAGAAATTTTCTTATGGAGGAGTTGATCTCTTTATTCGTGTCCCGGCAGAACTAGCTGCAGTTGcagataataaaaagaaaaaagggcaCAACAAGAGTTTTATAATCATTCCTATTGTTGGAGGGATAGGAGCATTTACCATGGTTATATGTGCTTATCTTTTGTGGAGGAAATGTTCTGCTAGACATAGAGAAAGACACCCTCAAAACTCAATTATGAGAGgacaaaaacaaatgaaattggATGAACTACCACTATATGATTTTAAAAAGCTCGAAACTGCCACAAACTATTTTCACATTGATAACATGCTTGGGAAGGGAGGATTTGGCCCAGTATACAAGGGAATAATGGAAGATGGCCATGAAattgcggtaaaaagactctcAAAATCATCTGGACAAGGAATAGAAGAATTCATGAATGAAGTGTTAGTGATTTCAAAACTTCAACATCGAAATCTTGTGAGACTTCTTGGTTGTTGTGTTGAAAGGGGCGAGCAAATATTGGTTTATGAGTTCATGCCAAATAAGAGTTTGGATGCCTTTCTCTTTGatccgctacaaaagaaaattttagaTTGGAGAAAGAGGTCAAACATAATCGAAGGAATAGCTCGAGGTATACTCTATCTTCATAGAGACTCGAGACTACGGATTATACATAGAGATTTGAAAGCAAGCAACATCTTACTTGATGGCAACATGATTCCAAAAATATCAGACTTTGGTTTAGCTAGAATTGTTAAAGgtggagaagaagatgatgaagctAACACAAACAGAGTTGTTGGAACATATGGTTATATGCCGCCTGAATATGCAATGGAGggacttttctctgagaaatcAGATGTCTATAGTTTTGGGGTTTTATTGCTAGAGATTGTTAGCGGAAGGAGAAATAGTAGCTTTTATAACAACGAGGATTCTCTTAGTCTTGTAGGCTTTGCATGGAAGCTATGGTTAGAGGACAACATTATCTCTCTAATAGATCCAGAAGTATGGGATGCAGGCTTTGAGGGCAACATGTTGAGGTGCATACACATAGGACTTCTCTGTGTGCAAGAACTTCCAAAAGAAAGACCAAATATATCAACCGTTGTTTTGATGCTCATAAGTGAGATTACACATCTTCCTCCTCCGGGGAAAGTTGCATTTGTTCATAGGCAAAGTACACAATCTTCTCAAAAAAGTCATCAATCTAACTCAAACAACAATGTAACTCTGAGTGAAGTTCAAGGCAGATAA 2475 0.3281 MAFISHNINHLFITFLVLFCTFYSCYSSVNDTITSSKSLKDKETITSNNTNFKLGFFSPLNSTNRYLGIWYINETNNIWIANRDQPLKDSSGIVTIDKYGNLVIFNNQKGIIIWTTNISDSTNSTAQLDDFGNLILRDINSGATIWDSFSHPADAGVPTMKISINKVTGKQIAFVSRKSDNDPSSGHFSISLERLGAPEVFIWHDKNIHWRSGPWNAIGFLGSPVKLAEYLSGWNLVVAKEETYLIYNFIDKTIFAILSLTPHGKLKLVEYKNKKVIVNITEDKNECDFYGKCGPFGNCDNSSVPICSCFEGFEPKNLSEWRSSNWTSGCVRKEGFNLKCEMLNNGSSEVKQDGFLVKHNMKVPDYIEISVGNQNKCEIDCLANCSCLAHAYDPYIGCMYWSRELIDLQKFSYGGVDLFIRVPAELAAVADNKKKKGHNKSFIIIPIVGGIGAFTMVICAYLLWRKCSARHRERHPQNSIMRGQKQMKLDELPLYDFKKLETATNYFHIDNMLGKGGFGPVYKGIMEDGHEIAVKRLSKSSGQGIEEFMNEVLVISKLQHRNLVRLLGCCVERGEQILVYEFMPNKSLDAFLFDPLQKKILDWRKRSNIIEGIARGILYLHRDSRLRIIHRDLKASNILLDGNMIPKISDFGLARIVKGGEEDDEANTNRVVGTYGYMPPEYAMEGLFSEKSDVYSFGVLLLEIVSGRRNSSFYNNEDSLSLVGFAWKLWLEDNIISLIDPEVWDAGFEGNMLRCIHIGLLCVQELPKERPNISTVVLMLISEITHLPPPGKVAFVHRQSTQSSQKSHQSNSNNNVTLSEVQGR 824
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tsu08g00346 824 SMART ntp_6 350 422 IPR003609 -
Tsu08g00346 824 SUPERFAMILY alpha-D-mannose-specific plant lectins 67 217 IPR036426 -
Tsu08g00346 824 SMART serkin_6 507 782 IPR000719 GO:0004672|GO:0005524|GO:0006468
Tsu08g00346 824 Gene3D - 24 150 IPR036426 -
Tsu08g00346 824 ProSitePatterns Serine/Threonine protein kinases active-site signature. 628 640 IPR008271 GO:0004672|GO:0006468
Tsu08g00346 824 ProSiteProfiles Bulb-type lectin domain profile. 30 149 IPR001480 -
Tsu08g00346 824 MobiDBLite consensus disorder prediction 798 824 - -
Tsu08g00346 824 ProSiteProfiles EGF-like domain profile. 283 319 IPR000742 -
Tsu08g00346 824 Pfam Protein tyrosine and serine/threonine kinase 508 719 IPR001245 GO:0004672|GO:0006468
Tsu08g00346 824 Pfam D-mannose binding lectin 78 178 IPR001480 -
Tsu08g00346 824 CDD STKc_IRAK 513 780 - -
Tsu08g00346 824 Pfam PAN-like domain 351 408 IPR003609 -
Tsu08g00346 824 CDD B_lectin 36 152 IPR001480 -
Tsu08g00346 824 PANTHER G-TYPE LECTIN S-RECEPTOR-LIKE SERINE/THREONINE-KINASE 20 823 - -
Tsu08g00346 824 PANTHER RECEPTOR-LIKE SERINE/THREONINE-PROTEIN KINASE SD1-8 20 823 - -
Tsu08g00346 824 ProSiteProfiles Protein kinase domain profile. 507 785 IPR000719 GO:0004672|GO:0005524|GO:0006468
Tsu08g00346 824 Gene3D Transferase(Phosphotransferase) domain 1 583 786 - -
Tsu08g00346 824 PIRSF SRK 2 824 IPR024171 GO:0004674
Tsu08g00346 824 CDD PAN_AP_plant 345 423 - -
Tsu08g00346 824 ProSiteProfiles PAN/Apple domain profile. 340 423 IPR003609 -
Tsu08g00346 824 SUPERFAMILY Protein kinase-like (PK-like) 492 804 IPR011009 -
Tsu08g00346 824 Gene3D Phosphorylase Kinase; domain 1 466 582 - -
Tsu08g00346 824 SMART blect_4 36 152 IPR001480 -
Tsu08g00346 824 Pfam S-locus glycoprotein domain 210 317 IPR000858 GO:0048544
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tsu08g00346 Tsu-Chr8 3347379 3350929 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tsu08g00346 436 795 Receptor kinase-like Gene Family AT4G23230 53.186 6.77e-121 377
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_DLSV Tsu08g00346 PK_Tyr_Ser-Thr 2e-47 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tsu08g00346 - - mtr:MTR_8g013600 1268.83