Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tsu08g00345 ATGGCTTTCCTAAGTCATAACACAAATCACTTGTTCATTATTTTCATCATATTTTGCACCTTTTGTTCATGTTATAGTTCCATCAATGACACCATTACTTTATCAAAATCACTCAAAGATCAAGAAACAATAAcctcaaacaacaaaaacttCAAGCTAGGATTTTTCAGCCCAATAAACTCAACCAACCGTTACCTAGGAATTTGGTACATCAATGAAACCAACAACATATGGATTGCAAACAGAGACCAACCCATCAAAGATTCAAATGGAATTGTCTCAATTCACAAAGATGGTAATCTTGTAATCTTGAACAAACAAAATGGTATCATAATTTGGTCAACAAATATTTCAACTTCAACAAATTCAACAGCTCAACTTGAAGATTCAGGAAACTTGATTCTAAGAGACATAAACTCTGGAGAAACAATTTGGGATAGTTTCTCACACCCTGCAGATGCAGCTGTTCCAACCATGAGAATTGGTGCAAACAAAATAACAGGTAAGAAAATAACTTTTGTATCAAGAAAGAGTGACAATGATCCTACTTCAGGAGATTATTCAGCTAGTCTTGAAAGATTGGATGCACCTGAAGTTTTTATTTGGCATGGAAAAAATATTCATTGGAGAACTGGTCCATGGAATGGAAGAGTTTTTATCGGATCGCCGAGAATGTTAACCGAGTATTTATTCGGTTGGCGTTTAGATCATGACGGTGATGGTACGGATTATATAACTTACAATTTCGCCGACAAGTCTAAGTTTGGAATTCTCTCATTGACACCACATGGAACACTTAAGTTAGTTGAGTATAGTGATAAAAAGGAACTTTTAAGACTTGAGGTTGATCAAAATGAGTGtgatttttatggaaaatgtgGGCCATATGGTAATTGTGATAATTCTAGTGTACCAATTTGTAGTTGTTTTGAAGGGTTTGAGCCAAAGAATTTGGTGGAATGGAATTTAAGAAATTGGACTAATGGTTGTGTGAGGAAAGAAGGATTTAACTTGAAGTGTGAGATTTTGAAGAATGGATCAAATGATGTTAAACAAGATGGTTTTTTGGTGAAGCATAATATGAAAGTTCCTGATTTTTCTGTGAGATCAGATGGTAATCAAAATAAGTGTGGAACAGATTGTTTGGCAAATTGTTCGTGTTCGGCGTATGCATATGATCCTTATATTGGTTGTATGTATTGGAGCGGAGAGTTAATTGATTTGCAGAAATTTCCTTACGGAGGAGTTGATCTCTTCATTCGTGTGCCAGCAGAACTAGTTGAAGATCATGCAGTTGCTagtattaaaaaggaaaaagggCATAAAAAGAGCTTTCTAATCATTCCAATTGTTGTTGGGATAGGAGCATTTATCTTGGTTATATGTGCTTTTCTTTTCTGGAAGAAATGTTCTTCTAGAAATAAAGGAAGACAACTTCGAAACTCGATTATCAGAGAAGAGAAACCAATGAAATTGGATGAGTTACCACTATATGATTTTGAAAAGCTTGAAATTGCCACAAACTATTTTCACTTTGGTAATATGCTTGGGAAGGGAGGTTTTGGCCCCGTATACAAGGGAATAATGGAAGATGGGCAAGAAATTGCGGTGAAAAGACTCTCAAAAGCATCTGGACAAGGAATAGAAGAATTCATGAATGAAGTAGTAGTGATTTCTAAACTTCAACATAGAAATCTTGTAAGAATTCTTGGTTGTTGCGTTGAAAGGGGCGAACAAATGTTGGTTTATGAATTCATGCCAAACAAGAGTTTAGATGCCTTTCTCTTTGatccattgcaaaagaaaattttaGATTGGAAAAAGAGGTCAAGCATAATTGAAGGAATAGCTCGAGGTATACTCTATCTACATAGAGACTCGAGACTAAGGATCATACATAGAGATTTAAAAGCAAGTAACATCTTACTTGACGGTGACATGATTCCAAAAATAGCAGACTTCGGTTTAGCTAGAATTGTTAAAGggggagaagaagatgaagctaATACAAAACGGGTTGTTGGAACTTATGGTTATATGCCGCCTGAATATGCAATGGAGggacttttctctgagaaatcAGATGTCTATAGTTTTGGAGTTTTACTGCTAGAGATTGTTAGTGGACGAAGAAATAGTAGCTTTTATCACAACGAGTGCTCTCTTAGCCTTGTCGGCTTCGCATGGAAGCTATGGTTAGAAGACAACATTATATCTCTAATAGATCCAGAGGTATGGGATCCATACTATGAGAGTAGCATGTTGAGATGCATTCAAATAGGACTTCTTTGTGTGCAAGAAATTCCAAGAGAAAGACCAAATATATCAACTGTTGTTTTAATGCTCATAAGTGAGATTACACATCTTCCTCCTCCAGGAAAAGTTGCATTTGTTCATAGACAAAATTCTAAAAGTACAGAATCTTCTCAAAAAAGTCAGCAATCTTCAAACTCAAACAACCATGTAACTTTGAGTGAAGTCCAAGGCAGATAA 2493 0.341 MAFLSHNTNHLFIIFIIFCTFCSCYSSINDTITLSKSLKDQETITSNNKNFKLGFFSPINSTNRYLGIWYINETNNIWIANRDQPIKDSNGIVSIHKDGNLVILNKQNGIIIWSTNISTSTNSTAQLEDSGNLILRDINSGETIWDSFSHPADAAVPTMRIGANKITGKKITFVSRKSDNDPTSGDYSASLERLDAPEVFIWHGKNIHWRTGPWNGRVFIGSPRMLTEYLFGWRLDHDGDGTDYITYNFADKSKFGILSLTPHGTLKLVEYSDKKELLRLEVDQNECDFYGKCGPYGNCDNSSVPICSCFEGFEPKNLVEWNLRNWTNGCVRKEGFNLKCEILKNGSNDVKQDGFLVKHNMKVPDFSVRSDGNQNKCGTDCLANCSCSAYAYDPYIGCMYWSGELIDLQKFPYGGVDLFIRVPAELVEDHAVASIKKEKGHKKSFLIIPIVVGIGAFILVICAFLFWKKCSSRNKGRQLRNSIIREEKPMKLDELPLYDFEKLEIATNYFHFGNMLGKGGFGPVYKGIMEDGQEIAVKRLSKASGQGIEEFMNEVVVISKLQHRNLVRILGCCVERGEQMLVYEFMPNKSLDAFLFDPLQKKILDWKKRSSIIEGIARGILYLHRDSRLRIIHRDLKASNILLDGDMIPKIADFGLARIVKGGEEDEANTKRVVGTYGYMPPEYAMEGLFSEKSDVYSFGVLLLEIVSGRRNSSFYHNECSLSLVGFAWKLWLEDNIISLIDPEVWDPYYESSMLRCIQIGLLCVQEIPRERPNISTVVLMLISEITHLPPPGKVAFVHRQNSKSTESSQKSQQSSNSNNHVTLSEVQGR 830
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tsu08g00345 830 SMART blect_4 35 151 IPR001480 -
Tsu08g00345 830 CDD STKc_IRAK 516 782 - -
Tsu08g00345 830 PIRSF SRK 2 830 IPR024171 GO:0004674
Tsu08g00345 830 Gene3D Transferase(Phosphotransferase) domain 1 586 789 - -
Tsu08g00345 830 SUPERFAMILY Protein kinase-like (PK-like) 495 811 IPR011009 -
Tsu08g00345 830 Pfam PAN-like domain 351 408 IPR003609 -
Tsu08g00345 830 CDD B_lectin 35 151 IPR001480 -
Tsu08g00345 830 Pfam Protein tyrosine and serine/threonine kinase 511 779 IPR001245 GO:0004672|GO:0006468
Tsu08g00345 830 PANTHER RECEPTOR-LIKE SERINE/THREONINE-PROTEIN KINASE SD1-8 19 829 - -
Tsu08g00345 830 SUPERFAMILY alpha-D-mannose-specific plant lectins 66 216 IPR036426 -
Tsu08g00345 830 SMART serkin_6 510 784 IPR000719 GO:0004672|GO:0005524|GO:0006468
Tsu08g00345 830 Pfam S-locus glycoprotein domain 209 317 IPR000858 GO:0048544
Tsu08g00345 830 ProSiteProfiles Bulb-type lectin domain profile. 29 148 IPR001480 -
Tsu08g00345 830 Gene3D - 23 149 IPR036426 -
Tsu08g00345 830 ProSiteProfiles Protein kinase domain profile. 510 787 IPR000719 GO:0004672|GO:0005524|GO:0006468
Tsu08g00345 830 PANTHER G-TYPE LECTIN S-RECEPTOR-LIKE SERINE/THREONINE-KINASE 19 829 - -
Tsu08g00345 830 CDD PAN_AP_plant 345 423 - -
Tsu08g00345 830 ProSitePatterns Serine/Threonine protein kinases active-site signature. 631 643 IPR008271 GO:0004672|GO:0006468
Tsu08g00345 830 Pfam D-mannose binding lectin 77 177 IPR001480 -
Tsu08g00345 830 MobiDBLite consensus disorder prediction 799 830 - -
Tsu08g00345 830 SMART ntp_6 350 422 IPR003609 -
Tsu08g00345 830 ProSiteProfiles PAN/Apple domain profile. 340 423 IPR003609 -
Tsu08g00345 830 Gene3D Phosphorylase Kinase; domain 1 484 585 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tsu08g00345 Tsu-Chr8 3338581 3342267 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tsu08g00345 446 810 Receptor kinase-like Gene Family AT4G23190 52.011 7.83e-121 375
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_DLSV Tsu08g00345 PK_Tyr_Ser-Thr 3e-48 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tsu08g00345 - - mtr:MTR_8g013600 1293.87
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Tsu08g00345 08 3338581 3342267 Tsu08g00345 08 3338581 3342267 ECH