Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tsu08g00343 ATGTCAACCGAGTATTTATTTGGTTGGCGTTTAGATCACGATCCGGATGGAACAGATTATATGACTTACGATTTTGCGGAAACCCAAACTATGTTTGGAATTCTCTCAGTGACACCACATGGAACACTTAAGTTGGTTGAGTTTATgaataaaaaggaaatttttaGACTTGAGGTTGATCAAATTGAGTGtgatttttatggaaaatgtgGGCCATTTGGTATTTGTGATAATTCTAGTGTACCAATTTGTAGTTGTTTTGAAGGGTTTGAGCCAAAGAATTTGGTGGAGTGGAGTTTAAGAAATTGGACTAATGGTTGTGTTAGGAAGGAAGGATTAAACTTACAGTGTGAGATGTCGAAGAATGGATCAAGTGAATTGAAAGAAGATGGTTTTTTGGTTAATCATTTTATGAAAGTTCCTGATTATGCTAATAGATTAGATGGTAATCAAGACGAGTGTAGAAGATATTGTTTGACAAATTGTGCTTGTGTGGCATATGCATATGATCCTTATATAGGTTGTATGTATTGGAGTGAAGAGTTAATTGATTTGCAGAAATTTCCTTACGGAGGAGTTGATCTCTTCATTCGTATACCGGCGGAATTAGCTTTcaataatatagaaaaaaaaggGCGCAATAGGAGTACCTTAATCATTGCAATTACCGGAGCAATAGTAGCATTTACTTTGGTTATATGGACTTATCTTTTGTGGAGGAAATGTTCTCCTAGGCGTAAAGGAAGACAACCTCAAAACTTGATTAATAGTGGACATAATCAAATGAAATTGGATGAGCTGCCACTATATGATTTTGAAAAGCTTGAAACCGCTACAAACAACTTTCACTTTGGTAATATGCTTGGGAAGGGAGGTTTTGGTTCTGTATACAAGGGAATAATGCAAGATGGACAAGAAATTGCTGTAAAAAGATTGTCAAAAGCATCGGGACAGGGAATAGAAGAATTCATGAACGAAGTAGTAGTGATTTCTAAACTTCAACATCGCAATCTTGTACGACTTCATGGTTGTTGTGTTGAAAGGGGCGAGCAAATGTTGGTTTATGAGTTCATGCCAAATAAGAGTTTGGATGCACTTCTTTTTGatccactacaaaagaaaaatttagatTGGAAAAAGCGGTTGACCATAATCGAAGGAATAGCTCGAGGTATACTCTATCTTCATAGAGACTCAAGACTAAGGATTATACATAGAGATTTAAAAGCAAGCAACATCTTACTTGATGGCGACATGATTCCAAAAATATCAGACTTTGGTTTAGCTAGAATTGTTAaaggtgatgaagatgatgaatctaATACAAAAAGGGTTGTTGGAACTTATGGTTATATGCCACCTGAATACGCAATGGAGGGGCTTTTCTCTGAAAAATCAGATGTTTATAGCTTTGGAGTTTTATTGCTAGAGATTGTTAGCGGACGAAGAAATAGTAGCTTTTATCACCACGAGGATTCCCTTAGCCTCGTAGGCTTTGCATGGAAGCTATGGTTAGAAGAAAACATTATATCTCTAGTAGATCAAGAGGTATGGGATGAATGTTCTGAGAGCAGCATGTTAAGGTGCATACACATAGGACTTCTATGTGTTCAAGAACTTCCAAGAGAAAGACCAAATATATCAACTGTTGTTTTGATGCTTATAAGTGAGATTACACATCTTCCTCCTCCAGGGAAAGTTGCATTTGTTAACAAGCAAAATTCAAGAAGTACAGAATCTTCTCAAAAAAGTAATCAATCTAATTCTAACAACAATGTAACTATGAGTGATGTCCAAGGCAGGTAA 1806 0.3461 MSTEYLFGWRLDHDPDGTDYMTYDFAETQTMFGILSVTPHGTLKLVEFMNKKEIFRLEVDQIECDFYGKCGPFGICDNSSVPICSCFEGFEPKNLVEWSLRNWTNGCVRKEGLNLQCEMSKNGSSELKEDGFLVNHFMKVPDYANRLDGNQDECRRYCLTNCACVAYAYDPYIGCMYWSEELIDLQKFPYGGVDLFIRIPAELAFNNIEKKGRNRSTLIIAITGAIVAFTLVIWTYLLWRKCSPRRKGRQPQNLINSGHNQMKLDELPLYDFEKLETATNNFHFGNMLGKGGFGSVYKGIMQDGQEIAVKRLSKASGQGIEEFMNEVVVISKLQHRNLVRLHGCCVERGEQMLVYEFMPNKSLDALLFDPLQKKNLDWKKRLTIIEGIARGILYLHRDSRLRIIHRDLKASNILLDGDMIPKISDFGLARIVKGDEDDESNTKRVVGTYGYMPPEYAMEGLFSEKSDVYSFGVLLLEIVSGRRNSSFYHHEDSLSLVGFAWKLWLEENIISLVDQEVWDECSESSMLRCIHIGLLCVQELPRERPNISTVVLMLISEITHLPPPGKVAFVNKQNSRSTESSQKSNQSNSNNNVTMSDVQGR 601
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tsu08g00343 601 Gene3D Transferase(Phosphotransferase) domain 1 358 561 - -
Tsu08g00343 601 CDD STKc_IRAK 288 554 - -
Tsu08g00343 601 PANTHER G-TYPE LECTIN S-RECEPTOR-LIKE SERINE/THREONINE-KINASE 1 600 - -
Tsu08g00343 601 SMART ntp_6 127 199 IPR003609 -
Tsu08g00343 601 PANTHER RECEPTOR-LIKE SERINE/THREONINE-PROTEIN KINASE SD1-8 1 600 - -
Tsu08g00343 601 SMART serkin_6 282 556 IPR000719 GO:0004672|GO:0005524|GO:0006468
Tsu08g00343 601 ProSiteProfiles Protein kinase domain profile. 282 559 IPR000719 GO:0004672|GO:0005524|GO:0006468
Tsu08g00343 601 Gene3D Phosphorylase Kinase; domain 1 256 357 - -
Tsu08g00343 601 MobiDBLite consensus disorder prediction 572 601 - -
Tsu08g00343 601 ProSiteProfiles PAN/Apple domain profile. 117 200 IPR003609 -
Tsu08g00343 601 Pfam S-locus glycoprotein domain 13 94 IPR000858 GO:0048544
Tsu08g00343 601 ProSitePatterns Protein kinases ATP-binding region signature. 288 310 IPR017441 GO:0005524
Tsu08g00343 601 Pfam Protein tyrosine and serine/threonine kinase 283 552 IPR001245 GO:0004672|GO:0006468
Tsu08g00343 601 Pfam PAN-like domain 128 185 IPR003609 -
Tsu08g00343 601 ProSitePatterns Serine/Threonine protein kinases active-site signature. 403 415 IPR008271 GO:0004672|GO:0006468
Tsu08g00343 601 CDD PAN_AP_plant 114 200 - -
Tsu08g00343 601 SUPERFAMILY Protein kinase-like (PK-like) 267 588 IPR011009 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tsu08g00343 Tsu-Chr8 3318974 3334020 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tsu08g00343 207 569 Receptor kinase-like Gene Family AT4G23230 53.846 9.72e-125 379
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_DLSV Tsu08g00343 PK_Tyr_Ser-Thr 6.8e-51 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tsu08g00343 - - mtr:MTR_8g013600 925.235