Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Tsu08g00334 | atGGCTGTTCCAAAAGTGAATGAAAAGTTGCTTGAAGACCTTCAAGTTATGGGATTTCCACATGCAAGAGCAACAAGAGCACTCTATTATTCTGGAAATAGTAGTTTGGAGGAAGCTATAACATGGATGGTTGATCATGAGAATGATACTGATATTGATGAGATTCCATTGGTAGATGTAGACATTGATATTGATGCTTCTCCATCATTCCCTATCACAGAAGAAATGAGAAGAAGAGCAGTGGCATTAATTGCTAACAATTTAAGGGACCAAGAGAGCAATAAGAAAAAgtatgaagaaaaaataatggaaagagaaaaggaaaagGAGAGGATTCAAGCAGGTAAGAAACTCCATGAGGCGAAGCGAATCatagaagaaaatgaaagaaaacgGAATTTAGCATTGAGAAAagcagaaaaagaagaagagcaAAGAGCTAGGGATAACATTCTCAAGAAACTAGAGCAAGATAAGCTAAATAGAAGGTCTAAACATGGATTACCTTTAGAAAGCCAAGCAAATGTGAGATCATCACCAGCCATTGTAGTAAAGCAAGAAAAGATATCAAAGCCTGTTTATACAACCACAAAAATTGAACACTTGAGAGAATGTTTGAGGTCTCTCAAACGTGAACACAAGGGTGAGAATACAAGAATCCGAAGGGCCTTTGAAACACTTCTAGTGTATGTTGGAAATGTTGTCAAGAATCCTAAGGAGGAAAAATACAGAAAGATTCGACTGAGTAATCCATTATTTCATGATAGAGTTGGAAGTTTGAATGGAGGTGTAGAATTTCTTGAGCTATGTGGTTTTGAGAGAACTGATGATTTCTTGCATCTTCCTAGTGAAAAGGTTGACATGGAACTACTAAGTTCAGCTGGTTTTGTCTTAAATTCTGCAATGACAAATCCTTTCTTTGGACTTTTAAGTACTTAA | 939 | 0.3376 | MAVPKVNEKLLEDLQVMGFPHARATRALYYSGNSSLEEAITWMVDHENDTDIDEIPLVDVDIDIDASPSFPITEEMRRRAVALIANNLRDQESNKKKYEEKIMEREKEKERIQAGKKLHEAKRIIEENERKRNLALRKAEKEEEQRARDNILKKLEQDKLNRRSKHGLPLESQANVRSSPAIVVKQEKISKPVYTTTKIEHLRECLRSLKREHKGENTRIRRAFETLLVYVGNVVKNPKEEKYRKIRLSNPLFHDRVGSLNGGVEFLELCGFERTDDFLHLPSEKVDMELLSSAGFVLNSAMTNPFFGLLST | 312 |
Annotation information
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Tsu08g00334 | 312 | PANTHER | PUB DOMAIN-CONTAINING PROTEIN-RELATED | 1 | 312 | - | - | |
| Tsu08g00334 | 312 | SUPERFAMILY | UBA-like | 5 | 56 | IPR009060 | GO:0005515 | |
| Tsu08g00334 | 312 | Pfam | UBA/TS-N domain | 7 | 42 | IPR015940 | - | |
| Tsu08g00334 | 312 | SUPERFAMILY | PUG domain-like | 194 | 306 | IPR036339 | - | |
| Tsu08g00334 | 312 | Gene3D | - | 203 | 300 | - | - | |
| Tsu08g00334 | 312 | Pfam | PUB domain | 220 | 287 | IPR018997 | - | |
| Tsu08g00334 | 312 | PANTHER | F13M7.16 PROTEIN | 1 | 312 | - | - | |
| Tsu08g00334 | 312 | Coils | Coil | 81 | 115 | - | - | |
| Tsu08g00334 | 312 | Gene3D | - | 8 | 53 | - | - | |
| Tsu08g00334 | 312 | Coils | Coil | 118 | 161 | - | - | |
| Tsu08g00334 | 312 | MobiDBLite | consensus disorder prediction | 153 | 174 | - | - | |
| Tsu08g00334 | 312 | ProSiteProfiles | Ubiquitin-associated domain (UBA) profile. | 5 | 46 | IPR015940 | - | |
| Tsu08g00334 | 312 | SMART | PGNneu | 222 | 283 | - | - |
Duplication type information
| Select | Gene | Chromosome | Start | End | Duplicated_type |
|---|---|---|---|---|---|
| Tsu08g00334 | Tsu-Chr8 | 3241095 | 3244775 | Dispersed |
Functional genes information
| Select | Gene | Gene_start | Gene_end | Function | Ath_gene | Identity(%) | E-value | Score |
|---|---|---|---|---|---|---|---|---|
| Tsu08g00334 | 1 | 310 | C2H2 Transcription Factor Family | AT1G04850 | 54.633 | 5.35e-94 | 280 |
Pathway information
| Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
|---|---|---|---|---|---|---|
| Tsu08g00334 | K24348 | - | gmx:100781260 | 443.736 |