Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tsu08g00330 ATGGATCCAATTGTGAAATTGCTCCAAATCCGCTCCACCAACCTCTTCGCTCGCAGCAGAAGCAGCAACATGCAATTACGGAAAAACAAGATGGCAAGTTTCCTCTGTGATTTGGTGAAGCCATATGTGGAGAAAGTGATTAATGGGGCAATAGCTGAAGCACGTCATGTATTTTGCTTCACATGCCTTGTTAAGAAGTTTGAAGAAGAAAGGGCTAGGTTGGAACCAGAAAGGATAACTATGGTGCAACGTGCCAAAGTAGCAATAGAAAGAGATAAAGATATTCAAGCTAATGTTGGTTTTTGGGAAGAGGAAATTGATAAGCTCAATCAAGTggacacaaaaacaaaacaaacatgtttttttggattttgtcctgATTGCATATGGCGATATAAAAGGGGAAAGGAGTTGGCAAATAACTTTAAGGAGATCAAACGACTAAGAGAAACGGGAGAGAAACTTGTAAATATTGAACTTCCCCGTCGTCTTCCAGATGTTGAACGTTATTCGTCCAAAGATTACATATCTTTTGAAAGTAGAGAGTCAAAATACAAAGAACTGTTGGATGCACTAAAAGATGACAACAACTATATAACCGGATTGCAAGGGATGGGTGGAACCGGAAAAACTACATTGGCCAAAGAAGTGGGTAAAGAACTAAAGCAATCTGAACGATTTGCTCATGTCGTTGATACGACAGTGTCGTTTACTCCTGATATAAAAAAGATTCAAGATGATATTGCTGGACCTTTAGGATTGACATGGGAGAATTGTAATGAATCAGACCGACCCAAAAAACTATGGAGCAGATTAACAAATGGTGAGAAAATTCTTTTGATAATGGACGATGTGTGGAACCGAGACCCCCCTCTTGATTTTGATACAATAGGGATTCCAAAACAGGACAATCACATTGGTTGTAGAGTTCTTGTAACCTCACGCAATAAACAAACTTTCAACATAATGGATTGTGATAAGATAATTGAATTGGGTCTTTTATCTGAAGAAGACGCATGGATCATGTTCAAAAGGTATGCCAGGATATGTAATAGCTcctcaaaaaaattgattgataagGGACATAAAATTGCAAAGGAATGCAAACAATTACCAGTTGCAATTTCAATTATCGCCAGCAGCTTGAAGGGCCAACAACATCGAGAGCATGAGTGGGATGTGACATTAAAATCCTTGAAGAAGCCTATTTCCATGCatggtgttgatgatgatatGGTTGGAATTTATAAATGTTTGAAGTTTAGCTATGATTATTTGAAGGATGAAAAAGTCAAGGGGTTGTTCCTCTTATGTTCGGTTTTccgagaagatgaagaaaattcTGTTGAAGTTCTTACGAGACTTTGCATAGGAGTGGGTCTTTTTGGGGAAGATTATGGCAGTTATGATGATGTTCGAAACCAAGTAGTTGTAGCCAAAAACAAGCTCATAGATTCTTGTTTGTTGTTGGAGGTCAATAGAAACCGTCATAAAAAACTTCTAAAAATGCATGATTTGGTTCGTGATGCAGCTCAATGGATAGCGAACAAAGGGATTCAATGTgtaaatttgtttgataaaaatcaaAAGTCATTGGttgaaaatcaaacaaatattaaatatttattatgtgAAGGGAACTGCTTGGATTGTTTTTCCTTGAAATTTGATGGTTCCAAACTCGAGACTTTAATAGTCAAGGTGGATAGAGATGAAGACCGCAAATGTACAAAAGTTCCAAATTCTTTCTTTGAAAATGTTATCAAGCTTCGTGTTTTGTATATTTCAGGCTATTACCACCCAAATTACGATCAACCTTTATCATTACCAGATTCAATTCGATCATTGACAAATATTCGATCTATGTTGTTTGATCGTGTGGATTTAGGTGACATCTCTATTTTGGGAAACCTACAAAGTCTGGAGACTCTTGATTTTGCTTATTGCACAATCAATGAATTGCCAAACAATATTACAAAACTGAGGAAGTTTAAATTGTTGAAGTTGGAATATTGCAAAATTAGAATGAATAATCCATTTGAAGTTATTGAAAGATGCTCATCACTTGAAGAATTGTATTTCAAAGATAGTTTCAATGGTTTTTGTCAGGAAATAACCTTGCCTGAGTTCCAAAGATATCATATCCTTAATAGTGGGAATTGGAATTATATTCCTTTAACTCATACAATCGATTACCAGAAATATGTGTTGTTTTATGGTGATGAAACATGTCAATTTTCAAATGGAACACTTAAGTACTGCATGCAAACAACAGAGGCTCTTTCGCTACTAGGAATAAAAGGGGGATGGAGAAATCTCATGCCTGAGATTATTCCTGTAGAACTAGGTATGAATGATCTTGTTGAGCTTCGTTTGCGTCGCATTTCACAACTACGGTGCCTCATTGACACCATTGGTTCTCAAGTGCCAAATGTCTTGTCCAAGTTGGTTGTACTAGAActggaagaaatggaaaatttgGAAGAATTATTCATTGGCCCCCTTTCCTTTGAATCTTTGAACAATTTAGAAAATTTATCAATCAAGGATTGTAAACATTTGCGAAGCTTGTTTAAAGGTAAGTTAAACCTCTGCAATCTAAAGACCATCACACTTAAGAATTGCCCTATGTTAGTTTCCCTATTTGAAGTGTCAATTTCTCGAAGCCTGGTGCTACTAGAGACACTGACAATAGTTGGCTGTGAGGGACTGGAAACCATAATAGCAGATGAAAGAAGAGAGGATGAAGAAATAGATGACAGTGGTAATAATAAGAGTCATGGTTCAGTGTTTCCAAAACTAAAAGTTATTGATATTAAGAGATGTCACCGATTAGAATCTATACTACCTTCACTCTCTGCTCAAGACCTTCCTGCACTGAAAACTATCAGAATAAGAAAATGTGATGGATTGAAATATGTGTTTGGCAAATCCCAACATGTTGAACTGGTTTCGTTAAGTGAATTAGAGCTCTCTAAATTACCAAACTTCATTGGTATTTTTGAAGAATGTAATCATCTCATGTCTTCATGCGTGAAGGGATCATCTTCCACTTCCAATTATGGTTCCAAAGCAGAAATACAATTGGATCCTATCAAATGCAATACCTTCTCTTGGTGGACTCATATATGTTGTCATACCACAATCCCGTTGGTTAATGATGATTACATAACTACATTGCaggaatcaaattcatatcGACTTAACATATGGGAACGTGCACAATACATTCCAATAAAATCAAAGATCCTTTGCAATATTAAAGAGATTACACTGACTTGCTTACCGAAGATGAAATCAGTAATTATCCTATCTATTGCTCCAATTATGTTGTTGGAAACTTTGACTATCAAGAATTGTGATGGCCTGAAGCACATAataatagacattggagatcaTAACACTGGTGGCAACAACTTGGTCATTGTCTTCCCAAAATTGAAAAGGCTCAATGTTAAAGATTGCGCTCAATTGGAATACATATTTGGACATGACACTAGTGATCATCAAAACCACGTGGTGATTCAGCTTCATCTTACGGAATTGAGACATCTCTATCTTTGCAATCTGCCAAGTTTAGTTGCCATGTGTCCCAAACAATATCAAACAACATTTCCTTCTTTGGCTAAACTTGATCTCGGTGATTGTTCCCAGCTTGACATCAAAtctatttttcattcaatttcagAATCTTTGGATAATACAATCATTAAGGAATTGAGTGGGAACGTGGATCATTTTCTCACTTTGGAAATCCTTGAGGTATACAATAATTCCAaagtagaaaatatattttccctGAATGAAATAGATGGACAGCAACTGGACTTACGTTTGCAAGACATTAAGTTGTCTGATCTGTCTATGATGACTTGTCTTTTTGTGGGTCCCAAAAATTCATTTGCCCTCAAAAACCTTACACGCATAGAAATTGTGCGATGTGATAAATTGAAAATTGCATTCTCCACTTCCACTTTAAGATTTCTACCACTGTTGCTTTATATACGAATTGAAGAATGCAAAGAGTTGGAAcatattattgatgatgattcggagaataaaaaaaattcaaaatccttGTCTTCAACAACATGCTTCCCAAAGCTAGAAATACTTAATGTTATAAAGTGCAACAAGTTGAAATCTGTCCTTCCATTCTCTGTATGCAAAAAGCTTCCGAAGCTAAAAGCCCTGTTGATAACAGAAGCAAATGAGTTGGTGGAATTATTCAAAAGTGAAGATGATCAGAAAGTTGATATTCCAAATCTAAATATTGTAGCATTTGATATGCTACCAAGCCTCTGTTGTGCCCAGGGAAATCAATTTCAGGCTGTGAAAAATCGCATCGTGCGGAATTGTCAAAAACTCACTCTGACTTCAGCTTCCGCATCAATAACCGACATCATAAATGAAAGACATGACTTATGTTCAATAGATCGTCATTTGTATTGGGTTGTGGAGGGCCTAATTATTCAAGCTCAACAACAAAGTGCAGAAACCACTGAAGATGAGTCGGATTTAGAAAGTGTTGAAAATGATGGGATTGAACAACTACCAAGTGCAGAAACCACTGAAGATTTTGGATTGCCAAGTGTTGAAAATGTTCCGGATTTAGCAATACTACCAACAAATTCGAAAGAGTTGTTGAGTGAACAATCACTTGGAGAAACTGATACTATAGTCAAACCTTCTCaaGAATTGAATTTTACTATAAACATAAACttccttttaaattttgagCAGGGTATTGAGATAGAAGGAATTTCTAAGACTAATAATGATCAAGTTTCTCTAAATGATGACGCTTTCATGAAAGTAAACTCGACTGTTGAGGAACAATTTACCAAATCTATTGCATCTCAGTTCCCTTCAATGCCTTCTAAAAGTGACCCTTCTCAAAAAGTAGAAGATTTAAGTTCTTCTTTGCTTGTCAAGAGGGAGCTTGAGGAACTGGTCTCCAAGAATCATTTGGATTATGAGAACTTGTCTTTGTTAACTGATTTTCTTGTTGAGAATCCTTTGGTTCGTTTAAAGGACACTTCACTTCGTTATAGATACAAGGGTTGTGCTTACAACTTACTAGCTGAACTATTGAAATTTCTCAAAACCCATAGTTTGTTGGAAGTATCGGGCTCATGCCACTCTGAATTTTTGGAGCTATTACAAGATGCGCGCAACTTTGCTTTTGATAAGGAATGGTTGGATTGTGTCGAGAGGCGCGCTTTATATCCTGAAATACAAGTATCTCCAGATGCCTTGGAAAAATTATTGGAATCCAAGAAACGGGTTACCAAGGATGTTGAAGATTTGCGTTTCAAGATACACATTTTAAGTCAACATGTGGAAGATCTTAAGCATCAATTGACATCCTCTGAAGATGATTTGGAGAGTATCATTCAACAAGAGGCAGTTTTAAGTGCCCCTATTGGTTATTAG 5436 0.3469 MDPIVKLLQIRSTNLFARSRSSNMQLRKNKMASFLCDLVKPYVEKVINGAIAEARHVFCFTCLVKKFEEERARLEPERITMVQRAKVAIERDKDIQANVGFWEEEIDKLNQVDTKTKQTCFFGFCPDCIWRYKRGKELANNFKEIKRLRETGEKLVNIELPRRLPDVERYSSKDYISFESRESKYKELLDALKDDNNYITGLQGMGGTGKTTLAKEVGKELKQSERFAHVVDTTVSFTPDIKKIQDDIAGPLGLTWENCNESDRPKKLWSRLTNGEKILLIMDDVWNRDPPLDFDTIGIPKQDNHIGCRVLVTSRNKQTFNIMDCDKIIELGLLSEEDAWIMFKRYARICNSSSKKLIDKGHKIAKECKQLPVAISIIASSLKGQQHREHEWDVTLKSLKKPISMHGVDDDMVGIYKCLKFSYDYLKDEKVKGLFLLCSVFREDEENSVEVLTRLCIGVGLFGEDYGSYDDVRNQVVVAKNKLIDSCLLLEVNRNRHKKLLKMHDLVRDAAQWIANKGIQCVNLFDKNQKSLVENQTNIKYLLCEGNCLDCFSLKFDGSKLETLIVKVDRDEDRKCTKVPNSFFENVIKLRVLYISGYYHPNYDQPLSLPDSIRSLTNIRSMLFDRVDLGDISILGNLQSLETLDFAYCTINELPNNITKLRKFKLLKLEYCKIRMNNPFEVIERCSSLEELYFKDSFNGFCQEITLPEFQRYHILNSGNWNYIPLTHTIDYQKYVLFYGDETCQFSNGTLKYCMQTTEALSLLGIKGGWRNLMPEIIPVELGMNDLVELRLRRISQLRCLIDTIGSQVPNVLSKLVVLELEEMENLEELFIGPLSFESLNNLENLSIKDCKHLRSLFKGKLNLCNLKTITLKNCPMLVSLFEVSISRSLVLLETLTIVGCEGLETIIADERREDEEIDDSGNNKSHGSVFPKLKVIDIKRCHRLESILPSLSAQDLPALKTIRIRKCDGLKYVFGKSQHVELVSLSELELSKLPNFIGIFEECNHLMSSCVKGSSSTSNYGSKAEIQLDPIKCNTFSWWTHICCHTTIPLVNDDYITTLQESNSYRLNIWERAQYIPIKSKILCNIKEITLTCLPKMKSVIILSIAPIMLLETLTIKNCDGLKHIIIDIGDHNTGGNNLVIVFPKLKRLNVKDCAQLEYIFGHDTSDHQNHVVIQLHLTELRHLYLCNLPSLVAMCPKQYQTTFPSLAKLDLGDCSQLDIKSIFHSISESLDNTIIKELSGNVDHFLTLEILEVYNNSKVENIFSLNEIDGQQLDLRLQDIKLSDLSMMTCLFVGPKNSFALKNLTRIEIVRCDKLKIAFSTSTLRFLPLLLYIRIEECKELEHIIDDDSENKKNSKSLSSTTCFPKLEILNVIKCNKLKSVLPFSVCKKLPKLKALLITEANELVELFKSEDDQKVDIPNLNIVAFDMLPSLCCAQGNQFQAVKNRIVRNCQKLTLTSASASITDIINERHDLCSIDRHLYWVVEGLIIQAQQQSAETTEDESDLESVENDGIEQLPSAETTEDFGLPSVENVPDLAILPTNSKELLSEQSLGETDTIVKPSQELNFTININFLLNFEQGIEIEGISKTNNDQVSLNDDAFMKVNSTVEEQFTKSIASQFPSMPSKSDPSQKVEDLSSSLLVKRELEELVSKNHLDYENLSLLTDFLVENPLVRLKDTSLRYRYKGCAYNLLAELLKFLKTHSLLEVSGSCHSEFLELLQDARNFAFDKEWLDCVERRALYPEIQVSPDALEKLLESKKRVTKDVEDLRFKIHILSQHVEDLKHQLTSSEDDLESIIQQEAVLSAPIGY 1811
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tsu08g00330 1811 Gene3D - 153 330 IPR027417 -
Tsu08g00330 1811 PANTHER - 1258 1424 - -
Tsu08g00330 1811 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 170 438 IPR027417 -
Tsu08g00330 1811 Pfam NB-ARC domain 186 424 IPR002182 GO:0043531
Tsu08g00330 1811 Gene3D Ribonuclease Inhibitor 491 731 IPR032675 -
Tsu08g00330 1811 SUPERFAMILY L domain-like 502 1004 - -
Tsu08g00330 1811 SUPERFAMILY L domain-like 1083 1457 - -
Tsu08g00330 1811 Gene3D Ribonuclease Inhibitor 928 1348 IPR032675 -
Tsu08g00330 1811 Gene3D - 333 427 IPR042197 -
Tsu08g00330 1811 Gene3D Ribonuclease Inhibitor 750 920 IPR032675 -
Tsu08g00330 1811 PRINTS Disease resistance protein signature 199 214 - -
Tsu08g00330 1811 PRINTS Disease resistance protein signature 929 945 - -
Tsu08g00330 1811 PRINTS Disease resistance protein signature 272 286 - -
Tsu08g00330 1811 PRINTS Disease resistance protein signature 368 382 - -
Tsu08g00330 1811 Coils Coil 1753 1773 - -
Tsu08g00330 1811 Coils Coil 1781 1801 - -
Tsu08g00330 1811 SUPERFAMILY RNI-like 930 1216 - -
Tsu08g00330 1811 PANTHER - 83 1003 - -
Tsu08g00330 1811 PANTHER AND NB-ARC DOMAIN DISEASE RESISTANCE PROTEIN, PUTATIVE-RELATED 1258 1424 - -
Tsu08g00330 1811 PANTHER AND NB-ARC DOMAIN DISEASE RESISTANCE PROTEIN, PUTATIVE-RELATED 83 1003 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tsu08g00330 Tsu-Chr8 3187437 3202203 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tsu08g00330 200 623 WRKY Transcription Factor Family AT5G45050 26.424 2.47e-13 73.9
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tsu08g00330 - - cam:101508676 1820.05