Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tsu08g00285 ATGGGTATTTCCAGGGATTCTATGCACAAAAGGCGTGAGACGGGTGGAAAGAAGAAGTCATGGAGGAAGAAGCGAAAGTATGAGCTCGGTCGCCAGCCAGCTAACACCAAGCTCTCAAGCAACAAAACCGTCAGGAGGATCCGTGTTAGAGGCGGAAATGTCAAGTGGAGAGCCCTGAGATTGGATACTGGAAATTTTTCTTGGGGAAGTGAAGCTGTCACCCGCAAAACCCGTTTGCTCGATGTCGTGTACAATGCTTCGAACAATGAGCTTGTACGTACTCAGACTCTTGTGAAGAGTGCTATTGTGCAAGTTGATGCCGCTCCTTTCAAGCAGTGGTATCTTCAACACTATGGTGTTGAAATTGGCAGGAAGAAGAAACCTGCTGCTGGCAAGAAAGAATCAGAGGAGGCTGAAGCTGTGACTGAAGAAGTCAAAAAGAGTGCTCATGTTCAAAGAAAATTGGAGCAACGCCAGAAAGATCGCCAGCTTGATCCACATGTTGAAGAGCAGTTTAGTGGTGGAAGATTGCTAGCAAGCATTTCTTCTCGACCTGGTCAATGTGGCAGAGCTGATGGCTACATTCTGGAAGGTAAGGAACTTGAGTTCTACATGAAGAAACTCCAGAAGAAGAAGGGCAAGGGTGCAGCTTAA 654 0.4694 MGISRDSMHKRRETGGKKKSWRKKRKYELGRQPANTKLSSNKTVRRIRVRGGNVKWRALRLDTGNFSWGSEAVTRKTRLLDVVYNASNNELVRTQTLVKSAIVQVDAAPFKQWYLQHYGVEIGRKKKPAAGKKESEEAEAVTEEVKKSAHVQRKLEQRQKDRQLDPHVEEQFSGGRLLASISSRPGQCGRADGYILEGKELEFYMKKLQKKKGKGAA 217
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tsu08g00285 217 MobiDBLite consensus disorder prediction 125 171 - -
Tsu08g00285 217 TIGRFAM eS8: ribosomal protein eS8 1 198 IPR001047 GO:0003735|GO:0005840|GO:0006412
Tsu08g00285 217 PANTHER 40S RIBOSOMAL PROTEIN S8 1 217 IPR001047 GO:0003735|GO:0005840|GO:0006412
Tsu08g00285 217 MobiDBLite consensus disorder prediction 1 36 - -
Tsu08g00285 217 Gene3D Ribosomal protein S8e, subdomain 108 175 IPR042563 -
Tsu08g00285 217 Pfam Ribosomal protein S8e 5 196 IPR022309 -
Tsu08g00285 217 PANTHER 40S RIBOSOMAL PROTEIN S8 1 217 - -
Tsu08g00285 217 ProSitePatterns Ribosomal protein S8e signature. 11 30 IPR018283 GO:0003735|GO:0005840|GO:0006412
Tsu08g00285 217 CDD Ribosomal_S8e_like 5 196 - -
Tsu08g00285 217 MobiDBLite consensus disorder prediction 125 169 - -
Tsu08g00285 217 Gene3D - 27 212 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tsu08g00285 Tsu-Chr8 2743112 2745572 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tsu08g00285 1 205 Cytoplasmic Ribosomal Protein Gene Family AT5G59240 84.878 9.67e-126 352
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tsu08g00285 K02995 - han:110929725 348.591