Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tsu08g00283 ATGGAAAAccaattttttatgaatgttgGGTTTGAACCTTCACCTCATTCTTCAATGCCAACTTGGCAACCAATTTCCTCAGCCATGGAAATCCAACAAACATCATTGAATTGTTCCATTGACCAAAACCAAGATTGTTTTTTCAACCAAAATTGGGACAATAAGTCAACAGACCAAAACCTTAACTTTGATTCAGCACTTAGTTCAATTGTCTCATCCCCAACATCACCACAAAATCCCAACAAAATTTCCAATGAAAATATTGTGATGAGAGAATTACTAGGAAAATTAGGAACATTTGGTGAGATCTCACAACATTCTaaactcaacaacaacattGTACCAATGATGAACCAATCAATGACTATGAATTCAACTGTTCCTGAATTTTCAGCTGATCCTGGTTTTGTTCAAAGAGCTGCAAAATTTTCTTGCTTTGGTAGCAAAAGTTTCAATGATAGAAGTAACCAACATGTGATGAACAATGTTGATTTAGTTCAAAGATCTGTTAATTTACTACCAAGAGTTTCAAGTAGTCCTTCACTCAAAAACTTTGGATCTCAAATGGGTTACAAAGAGAACAAGAATTCTCCATTGCAACAAGAAAATGAGAGAATTGAAGTAGCTAATTCTCAAGAAGAATCTACAATTTCTGAGCAAAATACACCAAATGGTGAAATGGGTGTTAAAGCTTCACTTGATATGAATTCAAGGAAAAGAAAAGCTTCTTCTTCCAAAGGAAAAGCTTCAAACTTTACCAATCCTACTACCAAGGGTGTTGAAGGTAGTGGTGAAGATTCAAATGCAAAGAAAAGTAAGTCAGATGAAGgtgaaagaaatgaaaatggtGACATGAATATGGAGGAAGAATCCAAAGAAGGTAAAAATAATGCAGGAGAAGAGAAACAACAGAACAAGAGTAATTCAAAAGCTCCTGAACCTCAAAAAGATTACATTCATGTCAGAGCAAGAAGAGGTCAAGCTACTGACAGTCATAGTCTTGCAGAACGTgTTCGGAGAGAAAAAATAAGCGAGAGGATGAAACTTCTCCAAGATCTTGTACCAGGTTGCAATAAGGTTACTGGAAAAGCACTTATGCTTgatgaaattataaattatgttCAGTCATTGCAACGTCAAGTTGAGtttttgtctATGAAATTGTCTTCTGTTAACACAAGGATGGATTTAAGTATTGAAAGTCTTGTTCTATCAAAAGATATGTTTCAATCAAATAATTCTTTGCAAAACTCAATATTCCAATTAGATTCCTCATCACCATCCTTTTATGGGCAACAACCTCAGCAAAACCAAGCTATTGCTAATACAAATGGGGCACACTGCTCAGTGGACCCATTGGACTCTTCTTTGTGCCATAATCTTGGCATAAATGTACCTTCCCTAAATGGATTTATTGAAGGTGGCTCTCAGTATCCATTAACATTCTCTGAGGAAGACTTAAACACAATTGTTCAAATGGGATTTGGCCAAACTTCAAACAGGACAACACCAATACACTCCCCAACTTTCAACGGTTCAAATCAAGCAACACAAATGAAAATTGAGCTCTAA 1572 0.3422 MENQFFMNVGFEPSPHSSMPTWQPISSAMEIQQTSLNCSIDQNQDCFFNQNWDNKSTDQNLNFDSALSSIVSSPTSPQNPNKISNENIVMRELLGKLGTFGEISQHSKLNNNIVPMMNQSMTMNSTVPEFSADPGFVQRAAKFSCFGSKSFNDRSNQHVMNNVDLVQRSVNLLPRVSSSPSLKNFGSQMGYKENKNSPLQQENERIEVANSQEESTISEQNTPNGEMGVKASLDMNSRKRKASSSKGKASNFTNPTTKGVEGSGEDSNAKKSKSDEGERNENGDMNMEEESKEGKNNAGEEKQQNKSNSKAPEPQKDYIHVRARRGQATDSHSLAERVRREKISERMKLLQDLVPGCNKVTGKALMLDEIINYVQSLQRQVEFLSMKLSSVNTRMDLSIESLVLSKDMFQSNNSLQNSIFQLDSSSPSFYGQQPQQNQAIANTNGAHCSVDPLDSSLCHNLGINVPSLNGFIEGGSQYPLTFSEEDLNTIVQMGFGQTSNRTTPIHSPTFNGSNQATQMKIEL 523
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tsu08g00283 523 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 325 396 IPR036638 GO:0046983
Tsu08g00283 523 MobiDBLite consensus disorder prediction 176 315 - -
Tsu08g00283 523 CDD bHLH_AtBPE_like 317 402 - -
Tsu08g00283 523 PANTHER BHLH TRANSCRIPTION FACTOR 3 108 - -
Tsu08g00283 523 Gene3D - 324 399 IPR036638 GO:0046983
Tsu08g00283 523 Coils Coil 374 394 - -
Tsu08g00283 523 Pfam Helix-loop-helix DNA-binding domain 331 378 IPR011598 GO:0046983
Tsu08g00283 523 MobiDBLite consensus disorder prediction 176 227 - -
Tsu08g00283 523 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 327 377 IPR011598 GO:0046983
Tsu08g00283 523 MobiDBLite consensus disorder prediction 264 300 - -
Tsu08g00283 523 PANTHER STEROL REGULATORY ELEMENT-BINDING PROTEIN 3 108 IPR024097 GO:0006355
Tsu08g00283 523 PANTHER BHLH TRANSCRIPTION FACTOR 115 516 - -
Tsu08g00283 523 SMART finulus 333 383 IPR011598 GO:0046983
Tsu08g00283 523 PANTHER STEROL REGULATORY ELEMENT-BINDING PROTEIN 115 516 IPR024097 GO:0006355
Tsu08g00283 523 MobiDBLite consensus disorder prediction 246 263 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tsu08g00283 Tsu-Chr8 2717510 2721375 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tsu08g00283 1 477 Basic Helix-Loop-Helix Transcription Factor Gene Family AT3G07340 43.086 9.21e-99 303
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Tsu08g00283 HLH 4.1e-06 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tsu08g00283 - - gmx:100801233 624.009
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Tsu04g00911 04 8702488 8706147 Tsu08g00283 08 2717510 2721375 PCT