Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tsu08g00280 atgtattcatcatcatcttcatcaaccaATCCTCAATACCTTCACGACGTATTCATAAATTTCAGAGGTGAAGACACACGCAGAACATTTGTTTCACATCTTTACGCAGTCCTCTCAAATGCTGGAATCAACACTTTCCTCGACAACGAAAAGCTCGAAAAAGGCGAAGAAATTGGACATGAATTACTTCAAGCAATAAGTGTTTCTCATATTTCAATAATTGTTTTCTCAAAAAGTTATGCTGAATCTAGTTGGTGTTTAAATGAATTAGAGAAAATTATGGAATGTCGTACAACTCAAGGTCAAGTTGTTTTACCTGTTTTTTATGATATTGATCCTTCTGTTGTGAGGCATCAGAAAGGTGAATTTGGTAAAGCTTTGGAAGTTAGTGCTAAAAGTAGGTATATAATTGAGGAAGTTATGGAAAGAGTTTTGAATAGATGGAAAAAAGTTTTGACTGAAGCTTCTAGTTTGTCTGGTTTGGATGGAAACACTTTCAGGTATGACCGTGAATTGGTGAATAAAGTTGTTGAGGCTATTTTGCCAAAACTAGACAACAATACCTTGCCTATAACTGAATTTCCAGTTGGGTTAGAATCCCATGTGAAGCAAGTGGTTGGGTTGATCGAGAAACAAACGGGCAATGTTTGTATAGTAGGGATCTGGGGCATGGGAGGATCAGGTAAAACAACTGTAGCCAAAGCCGTCTACAATGAAATTCATCGTAGATTTGATTGTACAAGTTTCATTGAAAATATAAGAGAAGTGTGTGAACAGGATACTAGAGGGCATATGCATTTACAACAACAACTTCTTTCAGATGTCCTCAAAACAAAGGAGAAGATACATAGCATTGCGTTGGGGACAACTAGGATCCAAAAAGTGGTTTCTGGAAAAAAAGCACTCGTGGTACTTGATGATGTGACCGATTTTCAGCAAATAAGAGTCCTATGTGGGGATAATAAATGTTTTGGTTCTGGAAGTGTGTTAATTGTTACAACCAGGGATGTACACATACTTAAGTTACTTAAAGTTGGGTCTGACTCCGTCTATAAAATGGAGGAAATGCACAAAAACGAGTCCCTTGAGCTATTTTCTTGGCATGCTTTTAGAAAAGCAAGTCCTAAAGGAGGCTTTGGTGAACTCTCAAGAAGTGTGGCTTCTTATTGTAGAGGGTTACCGCTGGCTCTTGAAGTCCTTGGGTCCTACTTATTTGATAGGACAAAACAAGAATGGACAAGTGTACTATCGAAGTTAGAGAGAATTCCCAATGATCAAGTACATGAGAAGCTGAGAATAAGCTATGATGGTTTAAAGGATGATACGGTAAAGGATATATTTCTTGACATATGTTGTTTCTTTATTGGGAAGGACAGAGCCTATGTTACAGAGATACTAAATGGCTGTGGACTTTATGCTGATATCGGAATAGCTCTCCTCATAGATCGGAGCCTCCTAAAAGTTGAGAAGAATAACAAGCTCGGAATGCATGATTTAATAAGAGACATGGGAAGAGAAATTGTTCGCGAAACTTCAGCAAGAGAGCCAGGGAAGCGTAGTCGATTGTGGTTTCACGACGATGTACTTGatgttttgacaaaaaatacTGGAACAGAAACTGTTGAGGCACTGATTTTGAGCATGCAAAGAACAGGCAGGGTTAGCTTTAGTACTAATGTTTTCCAAGACATGAAGAAACTGAGACTTTTACAACTTGATCGTGTTGACCTCACTGGAGATTTTGGGTATCTTTCCAAACAACTGAGATGGGTTAACTGGCAACGATCTACCTTCAACTCTGTACCCAATGACTTTGATCAGGAAAATCTCGTTGCTTTTGAATTAAAACATAGCAATGTTAAACAAGTTTGGAAGGAAGCCAGGTTGTTGGAGAAGCTAAAAGTACTCAATTTCAGTCATTCCAAGTACTTGAGAAGCACCCCTGACTTTTCAAAATTACCAAATTTAGAAAAACTCATTATGAAGGATTGTCCAAGTTTGTCCGAGGTACACTCATCCGTTGGAGATCTCAAGAACCTCCTTCTGATAAATTTGAGGGACTGTACAAGTCTTGAGAATCTCCCAAGAGAGGTCTATCGATTGATATCAGTGAAAACTCTCATTCTTTCTGGTTGTTCAAAGATTGACAAATTGGAAGAAGATATATTGCAAATGGAATCCTTGACAACTCTAATTGCAACAAATTCTGGTCTCAAACAAGTCCCTTATTCAATAGTAAGATCAAAAAGCATTGCATACATATCTCTATGTGGATATGAAGGATTATCACGTGATATTTTTCCTTCTCTCATCAAGTCATGGATGTCACCAACCATAAATTCCCTACCCCATGTTTCTCCATTTGCAGGCAATTCATTGTCTCGATTTTCCTTGGATATGGTAGAGAGTAATACTATGGGCTATCAATCACCAATGCCTAACATCCTTACAAAACTTAGAAGTGTTTGGGTTCAATGCCACTCAGAGAATCAATTAAATCAAGAATCAAGAAGATTTCTTGATGATCTAtatgatttgaattttgttgaGTTGGAAACAACGTCACATGGACCACTGATCTCAAATCTCTGCTTGAGATCACTTGTGATTGGAATGGGGAGCTCCCAAATAGTCATGGACACTCTTGGGAAGAGGTTATCACAGGGATTGGCAACCAATTCTAGTGATTCTTTCCTTCCGGGTGATAATTATCCTTTTTGGTTAGCCTATAAAGGTGAAGGACCTTCAATACTTTTCCAAGTGCCCGGGGATAGTCATTGGTGCATGAAAGGAATAACTTTATGCGTTCTTTATTTATCAACACCGGAAAACCTACCAACTGAATGTCTCACTAGTGTCTTCATCATTAATTACACAAAATTCACTATCCAGATTTACAAGCGAGACACAGTAATGTCGTTTAATGATGAGGATTGGCAAGGCGTGGTATCAAATTTAGGAGTTGGTAACAATGTGGAGATTTTTGTAGCTATTGGTCATGGATTGACTGTTAAGGAGACAACTGCCTATCTAATATATGATCAGTCAAATGATGTGAAAATTGAGCCATCAATTACTGTGGAAGTTGAGCCATCTATGGGCGCAGAAATGGAGCCGTTACATGAAGTGAAAGTGCAACCATCATCTAATGTGGAAACGGAGCCATCTGATGTGAAATTTGAACCATCACTTATTGTAAAGAATGGGCCAATACCAAAGACaaatagaaaaatcttcacaagATTTTTAGAGAGAGTTAGAGAATGTTTCTGTTTGAACCAGAATTGA 3288 0.3738 MYSSSSSSTNPQYLHDVFINFRGEDTRRTFVSHLYAVLSNAGINTFLDNEKLEKGEEIGHELLQAISVSHISIIVFSKSYAESSWCLNELEKIMECRTTQGQVVLPVFYDIDPSVVRHQKGEFGKALEVSAKSRYIIEEVMERVLNRWKKVLTEASSLSGLDGNTFRYDRELVNKVVEAILPKLDNNTLPITEFPVGLESHVKQVVGLIEKQTGNVCIVGIWGMGGSGKTTVAKAVYNEIHRRFDCTSFIENIREVCEQDTRGHMHLQQQLLSDVLKTKEKIHSIALGTTRIQKVVSGKKALVVLDDVTDFQQIRVLCGDNKCFGSGSVLIVTTRDVHILKLLKVGSDSVYKMEEMHKNESLELFSWHAFRKASPKGGFGELSRSVASYCRGLPLALEVLGSYLFDRTKQEWTSVLSKLERIPNDQVHEKLRISYDGLKDDTVKDIFLDICCFFIGKDRAYVTEILNGCGLYADIGIALLIDRSLLKVEKNNKLGMHDLIRDMGREIVRETSAREPGKRSRLWFHDDVLDVLTKNTGTETVEALILSMQRTGRVSFSTNVFQDMKKLRLLQLDRVDLTGDFGYLSKQLRWVNWQRSTFNSVPNDFDQENLVAFELKHSNVKQVWKEARLLEKLKVLNFSHSKYLRSTPDFSKLPNLEKLIMKDCPSLSEVHSSVGDLKNLLLINLRDCTSLENLPREVYRLISVKTLILSGCSKIDKLEEDILQMESLTTLIATNSGLKQVPYSIVRSKSIAYISLCGYEGLSRDIFPSLIKSWMSPTINSLPHVSPFAGNSLSRFSLDMVESNTMGYQSPMPNILTKLRSVWVQCHSENQLNQESRRFLDDLYDLNFVELETTSHGPLISNLCLRSLVIGMGSSQIVMDTLGKRLSQGLATNSSDSFLPGDNYPFWLAYKGEGPSILFQVPGDSHWCMKGITLCVLYLSTPENLPTECLTSVFIINYTKFTIQIYKRDTVMSFNDEDWQGVVSNLGVGNNVEIFVAIGHGLTVKETTAYLIYDQSNDVKIEPSITVEVEPSMGAEMEPLHEVKVQPSSNVETEPSDVKFEPSLIVKNGPIPKTNRKIFTRFLERVRECFCLNQN 1095
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tsu08g00280 1095 Gene3D - 182 349 IPR027417 -
Tsu08g00280 1095 Pfam TIR domain 15 187 IPR000157 GO:0007165
Tsu08g00280 1095 Gene3D - 12 181 IPR035897 -
Tsu08g00280 1095 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 187 450 IPR027417 -
Tsu08g00280 1095 PANTHER LEUCINE-RICH REPEAT-CONTAINING PROTEIN 18 1013 IPR044974 GO:0006952
Tsu08g00280 1095 Gene3D - 356 439 IPR042197 -
Tsu08g00280 1095 PRINTS Disease resistance protein signature 675 691 - -
Tsu08g00280 1095 PRINTS Disease resistance protein signature 390 404 - -
Tsu08g00280 1095 PRINTS Disease resistance protein signature 295 309 - -
Tsu08g00280 1095 PRINTS Disease resistance protein signature 218 233 - -
Tsu08g00280 1095 SUPERFAMILY L domain-like 512 869 - -
Tsu08g00280 1095 ProSiteProfiles TIR domain profile. 13 184 IPR000157 GO:0007165
Tsu08g00280 1095 Pfam NB-ARC domain 199 425 IPR002182 GO:0043531
Tsu08g00280 1095 Gene3D Ribonuclease Inhibitor 530 870 IPR032675 -
Tsu08g00280 1095 SUPERFAMILY Toll/Interleukin receptor TIR domain 4 160 IPR035897 -
Tsu08g00280 1095 SMART till_3 14 158 IPR000157 GO:0007165
Tsu08g00280 1095 PANTHER RESISTANCE PROTEIN (TIR-NBS-LRR CLASS), PUTATIVE-RELATED 18 1013 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tsu08g00280 Tsu-Chr8 2628787 2678216 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tsu08g00280 15 768 WRKY Transcription Factor Family AT4G12020 29.774 1.85e-80 287
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tsu08g00280 - - mtr:MTR_2g437560 1303.5