Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tsu08g00276 atgtcttcttcttcatcctccAACCCTCAATGGATCTACGATGTGTTCCTCAACTTCAGAGGGTCAGACACACGTAAGACTTTCATTTCTCATCTCTATGGTACCCTCACAAATGCCGGAATCAACACTTACATCGATCGCCAACTTCACAAGGGAACTGAGCTTGGACCAAAACTATTAGGAGCAATAGAAAAGTCTCATATATCTATCATTGTTCTCTCCAAAAACTATACTCAATCTATTTGGTGTCTTAACGAGCTTCAAAAAGTCATGGAATGTCACAGAACACATGGCCAGGTTGTTGTTCCTGTGTTTTATGATATTGACCCTTCCGTTGTTCGCCACCAAAAGGGTGATTTTGGACAAGTTTTGATAGATACTGCAAAAAGAGTATACTTTCAACAAGGAGGAGAGGAAAAGATGGAAAATGTGGTCTCAAATTGGAGGAGTGCACTCACCCAAGCTGCTGGTTTGTCTGGTTGGGATGTCCCTAGTTGCAGGAGTGAAGGTGAACTAATACAGCAAATTGTTGAGGATGTTTTGGCAAAAGTAGACAGCACATTTTTGTCTATTACCGAATTTCCAGTTGGATTGGAGTCTCGTGTACAAAATGTGACTGCTTTTATTGAAAATCAACCGAAGAAAGTTTGTGTGATAGGGATATGGGGAATGGGAGGGTCTGGTAAAACAACCACAGCTAAAGCTATCTACAATCGAATTCATCGCAAATTTGTTGATAGAAGTTTTGTCGAAAATGTTAGGGAAGTATGTCAAAAGGAGAATAGAGGGATTATTCATTTACAACAACAACTTCTTTCAGATATCCtgaaacagaagaagaaaatacaCAGTGTTGTGTTAGGAACAACTAAGATTGAGAAAAGATTTCGGGGGAAAAAGGTACTCGTTGTACTTGATGATGTAGCCACATTTGAACAGTTAAAATCGTTGTGTGGAAATCCTGAATTGTTTTGTCCGGGAAGTGTATTAATTGTCACAACTAGAGATCTACGCctacttaatttatttaaggtGGACTATATTTCTACAATGAAGGAAATGGACAAAAATGAGTCCCTTGAGCTTTTCAGTTGGCATGCTTTTAGACAACCGAGTCCAATAAATGACTTCTGCGAACTCTCAAGGAACGTAGTTGCTTACTGTGGAGGATTACCGGTTGCTCTTGAAGTCCTTGGTTCTTACTTATATAAGAGAACAGAACAAGAATGGAAAAGTGTACTCTTGAAATTAGAGAGAATTCCCAATGATCAAGTGCAAGAGAAACTGAGGATAAGCTATGATGGTTTAAAGGACGACATGGAGAAGGATATATTTCTTGACATATGTTGTTTCTTTATCGGAAAAGACAAAGTTGATGTTGCAGAGATTCTAAATGGTTGTGGACTTCATGCAGATATTGGAATAACTGTCCTTGTAGAGCGGAGCCTAGTCAAAGTTGAAAAGAATAACAAGCTTCAAATGCATGATTTAATAAGAGACATGGGAAGAGAAATTGTACGTGAAAGTTCACCAAAAGAGCTTGGGAAGCGTAGTAGATTGTGGTTTCGTGAGGATGTACATGATGTTTTGACAAAACATACTGGAACAAGAGCCATCGAAGGATTGGTTATGAAGTCACAAAGGACCAGTACAGTTTCCTTCAATACCATTGCTTTTGAGAGAATGAAAAGATTGAGATTGTTGCAACTTGATCATGTACATCTGATCGGAAACTATCAGTTTTTTCCGAAGCACCTAAAATGGCTTTCTTGGCAAGGATTTCCTTTAAAATACATACCAGAAAACTTTTATCAGGAAAATCTAGTTGCTATGAACTTAAAACATAGTAATCTTAAACAAGTTTGGAAGAAGCCGCAGTTGTTGGATAATCTAAAAATTCTCAATGTCAGTCATTCTAGATACTTGAAAAATACACCtgatttttcaaaattaccGAATCTAGAAAAGCTTATCATGAAGAATTGTCCAAGTTTATCTGTGATACACCATTCCATTGGAGATCTCAAGAATCTActtttgttgaatttgaagGACTGTGCAAGTCTTAGCAATCTCCCAAAGAAGGTCGATAAACTGAAATCTTTGAAAACATTTATACTTTCTGGTTGTTCAAAGATTGACAAGTTGGAAGAAGACATGGAACAGATGGAATCCTTGACAACACTGATTGCAAAAGACACATCTCTAAAAGATGTTCCCTATTCAATACTAAGATTGAAAAGCATTGGATATATATCTCTATGTGGTTACGAAGGTTTATCACGTGATGTTTTCCCTTCTCTCATTTGGTCATGGATGTCACCAACCAGAAATTCCCTACCCCGTGTTTCTCCATTTGAAGGCAATTCATTGTCACTAGTTTCTTTGGATGTAACGAGCAACAATATGGGCTATCAATCGAAAATGCTTAAAAACCTTTCAAAATTTAGAAGTGTTTGGATTCAATGCCGTTCGGAGATTCAGTTGACTCAAGAATTAAGAAATTTTCTTGATGATTTATATGATGTAAGTTTTACCAAGTTTGAAACTACATCACATGCATCACAAATCAGTAACATTTCTTTGAGATCGCTTTTGATTGGGATGGGAAGTTGCCACACGGCCATCAACGCTCTTGGCAAGAGCATATCACAGGGATTAACAACCAATGGTTCTGGTGAATTTTTCCTTCCAAGGGACAATTACCCTTCTTGGTTAGCCTATATAGGTGAAGGATCTTCAGTACATTTTCAAGTGCCTGAGGATAGTGATCGCTGCATGAAGGGAATAGCTTTATGTGTTGTTTATTCATCAACATCTGAAAACATGGCAACTGAATGTCTCGCtagtattttgataattaattacacaaaattCAACCTTCATATATACAAGGGAGATACAATAATGTCCTTTAATGATCAAGATTGGAAGAACGTAACATCAAATCTAGGACCTGGTGACAATGTGGGGATATTTGTAGCTTTTGGGCATGAATTGACTGTTAAGGAGACAGCTGTCTATCTAATATATGACCAGTCAATTACTATGGAAGTTGACGCTGATGAGAAAGATGCTTTGAAGAACAATGTTGATGTCAACAGAAgGATGGCTGAGCAAATTCCATATGCTGTTGCTGAAAGCCTCTTTAACAgGTTGGGTTCTGCAACCTTTCGTGAACATGGACAGCTTTATGGTGTTATGGATGAATTGGATAGGCTTAAGAACTCTGTTGAATACATAAGAGTTGTGCTCCTTGACGCCCAGGAGGAACAGGAACAAAATTGTGTTGTACAAAATTGGTTAAGAAGGATTGAAGATGTGCTTCATCGTGCGGATGACTTGCTGGATGAATTTATTATTGAAGaATCTGATATCACTGGCAGAGAAGATGATAAAAAGAATATTATAAATCTCTTGAAGCAACCATGCGAAGACAAAGAAAGCATCATGTCAATCCTGAAATTGAGTTACCTAAATTTGTCACTTCAATTAAGACAATGTTTTGCTTATTGCTCTTTATATCCTAAGGATTGGGAAATCGAGAAGGATACATTGATTCAACTTTGGATGGCACAGGGTTATCTTGAATGCTCAGATGAAAAACAACTCATGGAAGATGTCGGTAACGAATTTGTGAAGATTTTATTAATGAATTCATTTTTCCAAGATGCAAAAGTGGGTGAAGAAGGTGATATAGTTAGTTTCAAAATGCATGATTTAATGCATGATCTTGCAACACAAGTAGCTGGCAATGATTGTTGTTACATGGACAGTGAGGCGAAAAGATGTGAACAAAGACCCATGCATGTATCGTTTGAACCCAATGCACTTCATTTGTTGGACTCATTAGATCCAAGCAGATTGCGAACTTTGATTTTGTTGTCTTCCAATGAGGAGGAGGAATTGAATGGGGATGAATTGTCaattatttcaaaattcaaacactTGCGTGTCTTGACGCTGTCATATTGTTCTTTAAGCAAGTTGTCTAGTTCAATTGGAAAATTGAAACATTTAAGATATCTTAACCTTTCACACTGTAGAGGACTGAAAAGTCTTTACAAATCCTTTAGCAGACTTATATTGTtacaaacactaattttgacaccTAATGAAAAGGTGAAGCTTTCTACAAAGGTTGTATCAAAGTTAATCAATTTGAGACACCTTCACATCTCTGATTGGGAAGCTTCAAAAGACAAGACTCCATTTGGATTTGTAAAATTGAGCATTTGGCAGCATAAGGGAATGACTTCTTCAAACTGGATTTCTTCGCTGACAAATATTGTTGaaatctctttctttttgtgTGGAAGTCTCCAGTGTCTCCCACCGTTGGAGCATCTCCCATTCCTTAAGTCACTTGATATAAGTTTCCTTGAAGAACTGGAGTACATATATTATGAACAAGATTTCTCTTCAGCATTCTTTCCCTCTTTGGAGAGCCTCTCTTTGCAGTTTTGTTACAAGTTGAAGGGATGGCAAAGGGTGGGAGATGATTTTGATAATACTAACTGTTCACAAAATCCCTCCTTGCCTCCCTTTCCTCGTCTTTCTCAACTATCACTCATAGGATGTCTAATGTTGACTTGCATGCCTACCTTTCCAAATCTTGAGAACGGATTGGAATTGTACGATAGTAGGGTGGAAACATTGGTAGCAACACTGAACAGAGTAGCATTAGAAAGTTTGAATTGCTTCCCTCCTCTTTCCATGCTCAAATCCTTGCACATTGACGGAGTGAGCCTGGATGTGAAAAGTATCCCAAATGTTTGGATGCAAAATCTTACTTCTCTCCGGCTTCTTCAAATTAATTGGTTTTCATGTCAAGCATTTCAGGAAATTGAATCTTGGTTTAAGGATGACCTCAAGTGTCTTCCTTCTCTACAAACAATTGCCTTTCATAATTGTGAAGACCTAGAAGCATTGCCAGATTGGATATGCAACCTCTCATCGCTTCAGCATCTTAGGGTGTATGATTGCATAAAGTTGGCATCACTTCCTGAAGGAATGCCCTATAATCTTATCATCTCTTCTATAAAAAGGGAGGAGAcactttctcttcttttatcAGAACAAAGCAGAGGAAAAATATTCAGAGCTTTCCACGTGATTCTTTATGAGTCGGAAAAAAGTTGTCTATTGTGCATGTGTATGGGCTACAGCCTACAGCAACATGGTGGGCGTGTGTACAAAATACAAGCTCTTGCTATATTGACAACATATTCAAGAAATGTTTGCAGTTAA 5250 0.3655 MSSSSSSNPQWIYDVFLNFRGSDTRKTFISHLYGTLTNAGINTYIDRQLHKGTELGPKLLGAIEKSHISIIVLSKNYTQSIWCLNELQKVMECHRTHGQVVVPVFYDIDPSVVRHQKGDFGQVLIDTAKRVYFQQGGEEKMENVVSNWRSALTQAAGLSGWDVPSCRSEGELIQQIVEDVLAKVDSTFLSITEFPVGLESRVQNVTAFIENQPKKVCVIGIWGMGGSGKTTTAKAIYNRIHRKFVDRSFVENVREVCQKENRGIIHLQQQLLSDILKQKKKIHSVVLGTTKIEKRFRGKKVLVVLDDVATFEQLKSLCGNPELFCPGSVLIVTTRDLRLLNLFKVDYISTMKEMDKNESLELFSWHAFRQPSPINDFCELSRNVVAYCGGLPVALEVLGSYLYKRTEQEWKSVLLKLERIPNDQVQEKLRISYDGLKDDMEKDIFLDICCFFIGKDKVDVAEILNGCGLHADIGITVLVERSLVKVEKNNKLQMHDLIRDMGREIVRESSPKELGKRSRLWFREDVHDVLTKHTGTRAIEGLVMKSQRTSTVSFNTIAFERMKRLRLLQLDHVHLIGNYQFFPKHLKWLSWQGFPLKYIPENFYQENLVAMNLKHSNLKQVWKKPQLLDNLKILNVSHSRYLKNTPDFSKLPNLEKLIMKNCPSLSVIHHSIGDLKNLLLLNLKDCASLSNLPKKVDKLKSLKTFILSGCSKIDKLEEDMEQMESLTTLIAKDTSLKDVPYSILRLKSIGYISLCGYEGLSRDVFPSLIWSWMSPTRNSLPRVSPFEGNSLSLVSLDVTSNNMGYQSKMLKNLSKFRSVWIQCRSEIQLTQELRNFLDDLYDVSFTKFETTSHASQISNISLRSLLIGMGSCHTAINALGKSISQGLTTNGSGEFFLPRDNYPSWLAYIGEGSSVHFQVPEDSDRCMKGIALCVVYSSTSENMATECLASILIINYTKFNLHIYKGDTIMSFNDQDWKNVTSNLGPGDNVGIFVAFGHELTVKETAVYLIYDQSITMEVDADEKDALKNNVDVNRRMAEQIPYAVAESLFNRLGSATFREHGQLYGVMDELDRLKNSVEYIRVVLLDAQEEQEQNCVVQNWLRRIEDVLHRADDLLDEFIIEESDITGREDDKKNIINLLKQPCEDKESIMSILKLSYLNLSLQLRQCFAYCSLYPKDWEIEKDTLIQLWMAQGYLECSDEKQLMEDVGNEFVKILLMNSFFQDAKVGEEGDIVSFKMHDLMHDLATQVAGNDCCYMDSEAKRCEQRPMHVSFEPNALHLLDSLDPSRLRTLILLSSNEEEELNGDELSIISKFKHLRVLTLSYCSLSKLSSSIGKLKHLRYLNLSHCRGLKSLYKSFSRLILLQTLILTPNEKVKLSTKVVSKLINLRHLHISDWEASKDKTPFGFVKLSIWQHKGMTSSNWISSLTNIVEISFFLCGSLQCLPPLEHLPFLKSLDISFLEELEYIYYEQDFSSAFFPSLESLSLQFCYKLKGWQRVGDDFDNTNCSQNPSLPPFPRLSQLSLIGCLMLTCMPTFPNLENGLELYDSRVETLVATLNRVALESLNCFPPLSMLKSLHIDGVSLDVKSIPNVWMQNLTSLRLLQINWFSCQAFQEIESWFKDDLKCLPSLQTIAFHNCEDLEALPDWICNLSSLQHLRVYDCIKLASLPEGMPYNLIISSIKREETLSLLLSEQSRGKIFRAFHVILYESEKSCLLCMCMGYSLQQHGGRVYKIQALAILTTYSRNVCS 1749
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tsu08g00276 1749 ProSiteProfiles TIR domain profile. 11 184 IPR000157 GO:0007165
Tsu08g00276 1749 SMART till_3 12 158 IPR000157 GO:0007165
Tsu08g00276 1749 Gene3D - 1046 1151 - -
Tsu08g00276 1749 SUPERFAMILY L domain-like 1237 1543 - -
Tsu08g00276 1749 Pfam NB-ARC domain 205 427 IPR002182 GO:0043531
Tsu08g00276 1749 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 187 448 IPR027417 -
Tsu08g00276 1749 Gene3D - 190 348 IPR027417 -
Tsu08g00276 1749 Coils Coil 1098 1118 - -
Tsu08g00276 1749 SUPERFAMILY RNI-like 1512 1674 - -
Tsu08g00276 1749 CDD RX-CC_like 1043 1141 IPR038005 -
Tsu08g00276 1749 SUPERFAMILY L domain-like 493 822 - -
Tsu08g00276 1749 Pfam TIR domain 13 190 IPR000157 GO:0007165
Tsu08g00276 1749 Gene3D - 1153 1249 IPR036388 -
Tsu08g00276 1749 PRINTS Disease resistance protein signature 295 309 - -
Tsu08g00276 1749 PRINTS Disease resistance protein signature 388 402 - -
Tsu08g00276 1749 PRINTS Disease resistance protein signature 218 233 - -
Tsu08g00276 1749 PRINTS Disease resistance protein signature 673 689 - -
Tsu08g00276 1749 Gene3D Ribonuclease Inhibitor 1501 1695 IPR032675 -
Tsu08g00276 1749 Pfam Rx N-terminal domain 1047 1125 IPR041118 -
Tsu08g00276 1749 Gene3D Ribonuclease Inhibitor 525 877 IPR032675 -
Tsu08g00276 1749 Gene3D Ribonuclease Inhibitor 1265 1495 IPR032675 -
Tsu08g00276 1749 SUPERFAMILY Toll/Interleukin receptor TIR domain 2 161 IPR035897 -
Tsu08g00276 1749 PANTHER LEUCINE-RICH REPEAT-CONTAINING PROTEIN 16 1013 IPR044974 GO:0006952
Tsu08g00276 1749 Gene3D - 7 189 IPR035897 -
Tsu08g00276 1749 Gene3D - 353 437 IPR042197 -
Tsu08g00276 1749 PANTHER RESISTANCE PROTEIN (TIR-NBS-LRR CLASS), PUTATIVE-RELATED 16 1013 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tsu08g00276 Tsu-Chr8 2532003 2590245 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tsu08g00276 13 766 WRKY Transcription Factor Family AT4G12020 30.653 9.69e-82 297
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tsu08g00276 - - mtr:MTR_8g011850 1487.24