Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tsu08g00275 AtgtcttcttcatcatcttcatcatccacTTCTCAATGGATCTACGACGTTTTCCTCAGCTTCAGAGGGGAAGACGTTCGTCGTAACTTCGTTGCTCATCTCCACAAAGCCCTGTCAGATGCCAGAATCAACACTTTTCTCGACGATAAAAAGCTTGAAAAGGGAGCTGAGCTGGGACCCGAACTAATGCGAGCAATAAAAGGTTCTCGTATTTCCATCGTTGTTTTCTCAAAAAACTATATCAGATCTAGTTGGTGTCTTAAAGAGCTTGTAGAAATCATGGCATGCGCCAAAAACTGTGACCAGGTGGTGGTTCTGCCCATATTTTACGACGTTGACCCATCGCATTTGCGTCATCAGAAAGGTGGTTATGGAAAAGCTTTGCAAGCTACTGCAAAAGGGAGGAAACATTTGTTGAATGATTGGAAGATTGCACTAACCAAAGCTGCAACAATGATCGGTTGGGATGCCAAAAATGTTGGGACTGATGTTGAGCTAATTTCTCAAATTGTTGACAACGTTAAGAGAAAGCTAAACAGCAGATTATTGAATATTACCAAATATCCAGTTGGATTGGATACCCGTGTGCAACAAGTGATTCGGTTAATTGAAAACCGATCAAGTGAAGTTTGCATGATAGGGATTTGGGGGATGGGTGGATCGGGTAAAACAACAACAGTCACAGCTATCTACAACCAATTTCAATGCAAATTTGAGAATCACGGTTTCATTGAGAATATTAGAGAAGTCTGTAGCGGAGGTGTTAAAGGGATTAAACAATTACAAAAACAACTTCTTGCAGATGTCCTGAAATCAAATGAGAAAATAAACGGCACTGCATCCGGGATAACAACAATTGAGAAAAGATTTATGGGGAAAAGGGCTCTCATTGTACTCGATGACGTGAGCACATTTGATCAAGTAGAAGCCCTGTGTGGAAATTGTAAATGTTTTGGTGCGGGAAGTGTATTGATTGTTACATCCAGGGATGTAAACATACTTAAGAAACTTAAAGTTGACTATATCTATAGCATAAAGGAAATGGACGAAATCAAGTCCCTTGAGCTTTTCAGTTGGCATGCTTTTGGACAACAAAGTCCAAAAAGAGAATTCAGTGAACTCTCAAGCAGCATAGTTGCTTACTGTAAAGGATTACCACTGGCTCTTGAAGTCATTGGATCTTTCTTACATGACAGGACAGTACAAGAATGGGAAAGTACACTATCAACATTGGAGAAAATTCCTGATGATCAAGTGCATAAGAAACTGAGAATTAGCTATGATGGTCTAAAGAAGGATACAGAAAAGAATATATTTCTTgacatttgttgtttctttattGGTGAGGATAGAGCCTATGTTTCAGACATTATAGATGGTTGTGGCCTCTCTGCTGGTATTGGAATAACTGTTCTCGTAGAACGGAGCCTCGTAAAAGTTGAAAAGAATAACAAACTTGGAATGCATGGTTTGCTACGAGACATGGGAAGAGAAATTGTTTGTGAAAGATCAAGAAAACTGCTTGGGGAGCGTAGTCGATTGTGGTTTCATGAGGATGCACATAAAGTATTGACAGAAAATGCTGGAACAGAAACTGTGGAAGGATTGGTTTTGGAGTCGCAAAGCACCAGCAATGTTTGTATCAAAACTGATGCTTTCAAGGAGATGAAAAATTTGAGACTTTTACGACTTGATCATGTTGATCTTACTGGAGCTTTTAAGTATCTTTCTAAAGAACTGAGATGGCTCCATTGGCAGAGATTTACTTGCGAATATATACCTGATGACTTTTATCTGGGAAATCTTGTTGTTTTGGAGTTAAAACACAGCAATATTAAACGAGTCTGGAATGAAACCAAGTTGATGAAGAAGCTGAAAATTCTCAATCTCAGTCATTCCAAGTACTTGACAAGCACTCCTGACTTTTCAAAATTACCATATCTAGAAATGCTCATTATGGAGGACTGTCCAGACTTGTCGGAGGTACACCAGTCGATTGGGGATCTGAGCAAACTTcttttgataaatttgaaaGACTGTATAAGTCTTAGCAATCTCCCAGAGAAGATAAATCAATTGACGTCTTTGAAAACTCTCATCCTTTCTGGTTGTTCAAAGGTTGACAGGTTGGAAGAAGGCATACTACAAATGGAATCCTTGACAACACTGGCCATAGATGATACAGGTGTGAAAGAGGAGCCATATTCAGTGGTAAGATTGAACAACATCGGGTATATATCTCTATGTGGATGTGAAGGATCATCACGAGatgttttttattctttcattcGGTCTTGGATGTCACCAACAATGAATTTGCCCCTTAATAACTCAGACTTTCTAACACCAATAGTTAGGAGCCTTCAACAACTCAGAACTGTTTGGATACAATGCCACTCAGAGAATCAACTAACtcaagaattaaaaataatttttgatcAATATGATATCAATTCTACTGAATCAGAAGCATTACCAATCCCAAATGATTCCTTGAGATCACATTTGATTGGAATGAGAAGATTCTCCACAGTCATGGATACTCTTGGCAAGAGCATATCACAGGGATTAACAACCAATGATTCAAGCAATTTCTTCCTTCCGGGTGGCAATCATCCTTCTTGCTTAGCCTATACAGGTGTAGGACCTTCAGCACCATTTCAAGTTCCTAAGGATATTGATTGTCGCATGGAGGGAATAGTCTTACGTGTTGTTTATTCATCAACATTTGAAAAGTTGGCAGATGAATGTCTTACTAGTGTCTTGATTGTTAATTACACAAAGTGCACCATCCATATTTACAAGCGAGACACAATCATATCCTTTAATGATGAAGATTGGAAGAATTTAACATCAAATCTAGGACCTGGTGACGATATGAAGATTTATGTAGCTTTTGAGCATGGGTTGATTGTTAAGAAGACAATTGTGTATCTAGTATCTGGCCAGTCAATTATTGTGGATGTTGATGATGCTAACATGGAAGTGGAGCCATCAGAGGAAGTGAGTGTGCAGCCGTCCCTTGAAGTGAAGGTGAAGCAATCACCAAAGCCCATTAAAAGTATATTTACAAGAGTTCCAAACAGAATAGGTACATTTTTACGCTTGAAACGGCAGAAATAA 3123 0.3788 MSSSSSSSSTSQWIYDVFLSFRGEDVRRNFVAHLHKALSDARINTFLDDKKLEKGAELGPELMRAIKGSRISIVVFSKNYIRSSWCLKELVEIMACAKNCDQVVVLPIFYDVDPSHLRHQKGGYGKALQATAKGRKHLLNDWKIALTKAATMIGWDAKNVGTDVELISQIVDNVKRKLNSRLLNITKYPVGLDTRVQQVIRLIENRSSEVCMIGIWGMGGSGKTTTVTAIYNQFQCKFENHGFIENIREVCSGGVKGIKQLQKQLLADVLKSNEKINGTASGITTIEKRFMGKRALIVLDDVSTFDQVEALCGNCKCFGAGSVLIVTSRDVNILKKLKVDYIYSIKEMDEIKSLELFSWHAFGQQSPKREFSELSSSIVAYCKGLPLALEVIGSFLHDRTVQEWESTLSTLEKIPDDQVHKKLRISYDGLKKDTEKNIFLDICCFFIGEDRAYVSDIIDGCGLSAGIGITVLVERSLVKVEKNNKLGMHGLLRDMGREIVCERSRKLLGERSRLWFHEDAHKVLTENAGTETVEGLVLESQSTSNVCIKTDAFKEMKNLRLLRLDHVDLTGAFKYLSKELRWLHWQRFTCEYIPDDFYLGNLVVLELKHSNIKRVWNETKLMKKLKILNLSHSKYLTSTPDFSKLPYLEMLIMEDCPDLSEVHQSIGDLSKLLLINLKDCISLSNLPEKINQLTSLKTLILSGCSKVDRLEEGILQMESLTTLAIDDTGVKEEPYSVVRLNNIGYISLCGCEGSSRDVFYSFIRSWMSPTMNLPLNNSDFLTPIVRSLQQLRTVWIQCHSENQLTQELKIIFDQYDINSTESEALPIPNDSLRSHLIGMRRFSTVMDTLGKSISQGLTTNDSSNFFLPGGNHPSCLAYTGVGPSAPFQVPKDIDCRMEGIVLRVVYSSTFEKLADECLTSVLIVNYTKCTIHIYKRDTIISFNDEDWKNLTSNLGPGDDMKIYVAFEHGLIVKKTIVYLVSGQSIIVDVDDANMEVEPSEEVSVQPSLEVKVKQSPKPIKSIFTRVPNRIGTFLRLKRQK 1040
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tsu08g00275 1040 Pfam TIR domain 15 183 IPR000157 GO:0007165
Tsu08g00275 1040 SMART till_3 14 152 IPR000157 GO:0007165
Tsu08g00275 1040 Gene3D - 348 431 IPR042197 -
Tsu08g00275 1040 PRINTS Disease resistance protein signature 691 707 - -
Tsu08g00275 1040 PRINTS Disease resistance protein signature 212 227 - -
Tsu08g00275 1040 PRINTS Disease resistance protein signature 289 303 - -
Tsu08g00275 1040 PRINTS Disease resistance protein signature 382 396 - -
Tsu08g00275 1040 PANTHER LEUCINE-RICH REPEAT-CONTAINING PROTEIN 18 981 IPR044974 GO:0006952
Tsu08g00275 1040 ProSiteProfiles TIR domain profile. 13 178 IPR000157 GO:0007165
Tsu08g00275 1040 Gene3D Ribonuclease Inhibitor 475 820 IPR032675 -
Tsu08g00275 1040 SUPERFAMILY L domain-like 544 798 - -
Tsu08g00275 1040 Pfam NB-ARC domain 195 420 IPR002182 GO:0043531
Tsu08g00275 1040 Gene3D - 177 342 IPR027417 -
Tsu08g00275 1040 SUPERFAMILY Toll/Interleukin receptor TIR domain 4 155 IPR035897 -
Tsu08g00275 1040 PANTHER RESISTANCE PROTEIN (TIR-NBS-LRR CLASS), PUTATIVE-RELATED 18 981 - -
Tsu08g00275 1040 SUPERFAMILY "Winged helix" DNA-binding domain 418 524 IPR036390 -
Tsu08g00275 1040 Gene3D - 7 176 IPR035897 -
Tsu08g00275 1040 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 177 442 IPR027417 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tsu08g00275 Tsu-Chr8 2520371 2525415 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tsu08g00275 190 741 WRKY Transcription Factor Family AT5G45050 31.889 3.80e-77 275
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tsu08g00275 - - mtr:MTR_8g011850 1191.41