Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tsu08g00274 AtggattcttcttcttcatcctctGATTCTCGATTCATCTACGACGTGTTCATCAGTTTTAGAGGAGAAGACACTCGCAGGTCTTTTGTTTCTCATCTCCATGCTGCCCTCTCAAATGCCGGAATCGAAACTTTCAACGATGAACTATTTCGAAAGGGAGACGAAATTAGATCACAAACATTGAGAGCAATAGAAAAGTCTCGTATATCAATAGTTGTTTTCTCCAAAAACTACCCTGGATCTACTTGGTGTCTTGACGAGCTTGCAAAAATCATGGAATGCCACAAAGCTCATGACCAAGTCGTTATACCAGTGTATTACGACGTTGGTCCATCAGATGTGCGTCATCAATGTGGTGATTTtggaaaaacatttaaaaaaaccGCAGAAAATAGACACTTAGGTAAAGAATGGAAGGAAACAGTTTTGTCTAGTTGGAGGTCGGCACTCACTACGTCTGGTAGTTTCGCTGGTTTCGTAGTCACCAATTCCAGTAGTGAAGCTGAACTAGTGCAGCAAATTGTTGAGGTCATTTTGAAAAAGCTAAAGAGGAGAATATTGAATATCACCCAATATCCAGTTGGATTGGATACCCGCGTGCAACCAGTGATTCAGTTTATTCAAAATCAATCAAGCAAAGTTTCCTTAATAGGGATCTGCGGAATGGGTGGATCGGGGAAAACAACCACAGCCAAAGCCATCTACAATAACATTCATTGCAAATTTGTGAATCTAAGTTTCATTGGAAATGTTAGAGAAGTTTGCCAAAAGGAAAATAGAGGGATTATTCATTTACAACAACAACTTCTTTCAGATATCTTGAACACAAAGGAGAAGATAGGTAGCATCGAAGAGGGGGAAATGGTGATCAATGAAAGATTTCAGGGGAAAAGGGTACTCGTTGTACTTGATGATGTGACCACATTCGAACAATTAGAAGTGCTGTGTCGGAATCCTAATTTGTTTGGTCGAGGAAGTGTAGTAATTGTTACAACCAGAGATGCACACCTGCTTAAGCTAGTTAAATTTGACTATGTCTGTACAATGAAGGAAATGGATGAAAAGGAGTCCCTTGAACTTTTCAGTTGGCATGCTTTTAGACATCATAGTCCAATAGAAGAATTCAGAGAACTCGCATGGTACGCAGTTGTGTATTGTGGAGGATTACCACTGGCTCTTGAAGTCATTGGTTCTTACTTACATGGAAGGTCAGAAGAAGAATGGGAAAGTCAACTCTTGAAATTAAAGAGAATTCCCCATCATCAAGTGCATGAGATGCTGAGAATAAGCTATGATGGTTTAAAGGATGATATGGAAAAGGATATATTTCTTGACATATGTTGTTTCTTTATTGGGAAGGACAGAGCCTATGTTACAGAGATATTAAATGGTTGTGGACTTTTTGCTGATACTGGAATTGCTGTTCTCATAGATCAGGGCCTCCTAAAAGTTGACAAGAATAATAAGCTACAAATGCATGGTTTAATAAGAGACATGGGAAGAGAAATTGTTCGTCAAAGTTCACCAAGAAAGCTAGGGGAGCGTAGTCGATTGTGGTTTCATGACAAT 1569 0.383 MDSSSSSSDSRFIYDVFISFRGEDTRRSFVSHLHAALSNAGIETFNDELFRKGDEIRSQTLRAIEKSRISIVVFSKNYPGSTWCLDELAKIMECHKAHDQVVIPVYYDVGPSDVRHQCGDFGKTFKKTAENRHLGKEWKETVLSSWRSALTTSGSFAGFVVTNSSSEAELVQQIVEVILKKLKRRILNITQYPVGLDTRVQPVIQFIQNQSSKVSLIGICGMGGSGKTTTAKAIYNNIHCKFVNLSFIGNVREVCQKENRGIIHLQQQLLSDILNTKEKIGSIEEGEMVINERFQGKRVLVVLDDVTTFEQLEVLCRNPNLFGRGSVVIVTTRDAHLLKLVKFDYVCTMKEMDEKESLELFSWHAFRHHSPIEEFRELAWYAVVYCGGLPLALEVIGSYLHGRSEEEWESQLLKLKRIPHHQVHEMLRISYDGLKDDMEKDIFLDICCFFIGKDRAYVTEILNGCGLFADTGIAVLIDQGLLKVDKNNKLQMHGLIRDMGREIVRQSSPRKLGERSRLWFHDN 523
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tsu08g00274 523 Gene3D - 13 183 IPR035897 -
Tsu08g00274 523 Pfam TIR domain 14 184 IPR000157 GO:0007165
Tsu08g00274 523 PANTHER RESISTANCE PROTEIN (TIR-NBS-LRR CLASS), PUTATIVE-RELATED 17 522 - -
Tsu08g00274 523 SUPERFAMILY "Winged helix" DNA-binding domain 422 508 IPR036390 -
Tsu08g00274 523 Pfam NB-ARC domain 198 421 IPR002182 GO:0043531
Tsu08g00274 523 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 187 446 IPR027417 -
Tsu08g00274 523 SMART AAA_5 213 353 IPR003593 -
Tsu08g00274 523 SUPERFAMILY Toll/Interleukin receptor TIR domain 3 158 IPR035897 -
Tsu08g00274 523 PANTHER LEUCINE-RICH REPEAT-CONTAINING PROTEIN 17 522 IPR044974 GO:0006952
Tsu08g00274 523 PRINTS Disease resistance protein signature 216 231 - -
Tsu08g00274 523 PRINTS Disease resistance protein signature 293 307 - -
Tsu08g00274 523 PRINTS Disease resistance protein signature 386 400 - -
Tsu08g00274 523 SMART till_3 13 156 IPR000157 GO:0007165
Tsu08g00274 523 Gene3D - 351 435 IPR042197 -
Tsu08g00274 523 Gene3D - 184 345 IPR027417 -
Tsu08g00274 523 CDD AAA 194 347 - -
Tsu08g00274 523 ProSiteProfiles TIR domain profile. 12 182 IPR000157 GO:0007165
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tsu08g00274 Tsu-Chr8 2447677 2449377 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tsu08g00274 5 522 WRKY Transcription Factor Family AT4G12020 31.094 4.85e-57 204
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tsu08g00274 - - cam:101511388 666.766