Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tsu08g00272 ATGTCTTCTTCGTCATCCACTCCTCAGCGGATCTACGACTACGACGTCTTCCTCAGCTTTAGAGGGGAAGACACTCGTCGTGACTTCGTTGCTCATCTCTACCACGCCCTCTCAAATAATGCAATCAACACTTACCACGACAATCTGCTTGAAAAAGGGACAGTGCTGGAACCAGAACTCATGCTAGCAATACAGGGTTCTCGTATGTCCATAGTTGTTTTTTCCGAAAACTATGCCGAATCTAGTTGGTGTCTTAAAGAGCTTGGAAAAATAATGGAATGCAACAGAAATGATGGCCAGGTGGTTCTACCTGTTTTTAAAGACGTTGACCCAACTGTTGTGCGTCATCAAACGGGTGGTTTTGGAAGAGCTTTGGGAGAAACTGCTTCAAGAAGACCCTCAGGAGGGGAAATGAGGGAAAATCGGTTGTCCATTTGGAAGCAAGACCTAAAGGAAGCTGCAAATATATCTGGCTGGACTACCAAAGTCTATGGGACTGAAGTTGTAGTAATTTCTCAAATTGTTGAAGACGTTTTGAGAAAGCTAAAGAGTAGACAATTGAATATTGCCGAATTTCCAATTGGATTGGATCCCCGTGTGAAACAAGTGATTAAGtttattgaaaatcaaacaaGCAATGTTTGCTTGATAGGGATCTGGGGGATGGGTGGATCAGGTAAAACAACAACAGCCAAAGCTATCTACAACCAAATTCATTTACAATGGAAATTTGTGGATCTCATTTTCATCGAGAATATTAAAGATATTTGTAACAAAGGTGAAGGAGGGGTTATTCATTTACAAGAACAACTTAAGGGGAAAAGGGCACTCATTGTACTGGATGACGTGAGCACGTATGACCAAGTAAAAGGGATATGTCTAAATCGTAATTATTTTGCTCGGGGAAGTGTATTGATTGTTACATCCAGAGATGTACGCATACTTCAGTTACTTGAAGTTGACCATGTCTATAGCATAAAGGAAATGGATGAAAAGATGTCCCTTGAGCTCTTCAGTTGGCATGCTTTTAGACAATCAAGTCCAACTAAAGACTTTAGACAACTCTCAGAAAAGATAGTTGCTTGCTGTGGAGGATTACCACTGGCTCTTGAAGCCATTGGATCTTCCTTACGTAAAAGGACAAATGAAAAATACTTTGAAAATGCACTATCAGAATTAAGAAGCTCCAATGGTACGGTGCAAAAGTCACTGATAAGAAGCTATGATGGTTTAGAGAGTGATTGCCAAAGGGATATATTTCTTgacatttgttgtttctttattGGGGAGGACATAGCTTGTGTTACAGAGATACTAAATGGCTGTGGATTTTCTGCTGAtaccaaaataactgacctcaTAGAGCGGAGCCTCCTAAAAGTTGAAAAGAATAACAAACTTGAAATGCATGATTTTCTACGAGACATGGGAAGAGCAATTGTTGACAGATTAGCAAAAAAGCCTGGGGAGCGTAGTAGACTGTGGTTTGACGAGGATGTACGTAAAGTATTGGAAAAAAATAGAGGAACAAAAACCGTGAAAGGATTGGTTTGGAAGTCGCAAAGCAACAACAATGTTTCCTTCAAGGCTGATTCTTTTAGGGAGATGAAGAAGTTGAGGCTTTTACAACTTGATGATGTTGATCTTACTGGAGATTATGTGCACCTTTCTCAAGAACTGAGATGGCTCCGTTGGCAGGGATTTACACGCGACTGTATACCTAATGAATTTTATCAGAAAAATCTCGTTGTTTTTGAGTTAACACGCAGCAATGTTAAACAATTTTGGAGTGAAACCAAGTGTGATTTGCAGTTGATGGAGAAGCTGAAAATTCTCAATCTCAGTCGTTCCAAGTACTTAGAAAACACTCCTGACTTTTCAAAATTACCATATCTAGAAAAGCTCATTATGGAGGATTGTCCACGCTTGTCAAAGGTACACCAGTCGATTGGGGATCTGAGGAAACTTCTTCTGATAAATTTGAAAAACTGTACAGAACTTAGCTGTCTCCCAGAGAACATTAATAAATTGACGTCTTTGACAACTCTTATACTTTCTGGTTGTTCAAAGATTGACAAGTTGGAAGAAGGCATAATGCAGATGGAATCTTTGACAACACTGGCCATAAATGATACAGGTGTGAAAGAGGTGCCATATTCAGTTGTAAGATCGGAAAGCATCGGAAGCATCGCAAATCCCATTGAGTTCGTATTTGATTGGAATGAGAAGTTGCTCCACAGTCATGAATACTCTTGGAACGAGCAGATCACAGGCATTAACAACCAATGGTTTGAGCAATTTTTTCCTTCCGAGTGGCAATCATCCTTCTTGCTTAGCCTATACAGGTGCAGGGCCTTCAACACCATTTCAAGTTCCTAA 2379 0.3934 MSSSSSTPQRIYDYDVFLSFRGEDTRRDFVAHLYHALSNNAINTYHDNLLEKGTVLEPELMLAIQGSRMSIVVFSENYAESSWCLKELGKIMECNRNDGQVVLPVFKDVDPTVVRHQTGGFGRALGETASRRPSGGEMRENRLSIWKQDLKEAANISGWTTKVYGTEVVVISQIVEDVLRKLKSRQLNIAEFPIGLDPRVKQVIKFIENQTSNVCLIGIWGMGGSGKTTTAKAIYNQIHLQWKFVDLIFIENIKDICNKGEGGVIHLQEQLKGKRALIVLDDVSTYDQVKGICLNRNYFARGSVLIVTSRDVRILQLLEVDHVYSIKEMDEKMSLELFSWHAFRQSSPTKDFRQLSEKIVACCGGLPLALEAIGSSLRKRTNEKYFENALSELRSSNGTVQKSLIRSYDGLESDCQRDIFLDICCFFIGEDIACVTEILNGCGFSADTKITDLIERSLLKVEKNNKLEMHDFLRDMGRAIVDRLAKKPGERSRLWFDEDVRKVLEKNRGTKTVKGLVWKSQSNNNVSFKADSFREMKKLRLLQLDDVDLTGDYVHLSQELRWLRWQGFTRDCIPNEFYQKNLVVFELTRSNVKQFWSETKCDLQLMEKLKILNLSRSKYLENTPDFSKLPYLEKLIMEDCPRLSKVHQSIGDLRKLLLINLKNCTELSCLPENINKLTSLTTLILSGCSKIDKLEEGIMQMESLTTLAINDTGVKEVPYSVVRSESIGSIANPIEFVFDWNEKLLHSHEYSWNEQITGINNQWFEQFFPSEWQSSFLLSLYRCRAFNTISSS 792
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tsu08g00272 792 SMART till_3 13 156 IPR000157 GO:0007165
Tsu08g00272 792 Gene3D - 328 412 IPR042197 -
Tsu08g00272 792 SUPERFAMILY "Winged helix" DNA-binding domain 407 505 IPR036390 -
Tsu08g00272 792 PRINTS Disease resistance protein signature 363 377 - -
Tsu08g00272 792 PRINTS Disease resistance protein signature 675 691 - -
Tsu08g00272 792 PRINTS Disease resistance protein signature 216 231 - -
Tsu08g00272 792 ProSiteProfiles TIR domain profile. 12 182 IPR000157 GO:0007165
Tsu08g00272 792 Gene3D Ribonuclease Inhibitor 513 725 IPR032675 -
Tsu08g00272 792 SUPERFAMILY L domain-like 522 760 - -
Tsu08g00272 792 CDD NK 216 288 - -
Tsu08g00272 792 SUPERFAMILY Toll/Interleukin receptor TIR domain 3 159 IPR035897 -
Tsu08g00272 792 Pfam TIR domain 14 185 IPR000157 GO:0007165
Tsu08g00272 792 PANTHER LEUCINE-RICH REPEAT-CONTAINING PROTEIN 17 741 IPR044974 GO:0006952
Tsu08g00272 792 Pfam NB-ARC domain 265 411 IPR002182 GO:0043531
Tsu08g00272 792 Gene3D - 189 323 IPR027417 -
Tsu08g00272 792 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 189 423 IPR027417 -
Tsu08g00272 792 Gene3D - 8 188 IPR035897 -
Tsu08g00272 792 PANTHER RESISTANCE PROTEIN (TIR-NBS-LRR CLASS), PUTATIVE-RELATED 17 741 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tsu08g00272 Tsu-Chr8 2405823 2410566 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tsu08g00272 13 721 WRKY Transcription Factor Family AT4G12020 30.040 1.70e-73 260
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tsu08g00272 - - cam:101511388 869.766