Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tsu08g00271 atggattcttcttcttcatggTCCTCCAATCCTCGATGGATACACGACGTGTTCATCAATTTTAGACCAGAAGACACTAGCAAGAGTTTCGTTTCTCATCTCATTGATGCCTTCACAAAAGCCAGAATCAACACTTATATCGACTCTCAGCCTAACACAGGAACCGAATTAGGACCAGAATTATTACGAGCAATAGAAAAGTCTCGTATATCTATCATTGTTTTCTCCAAAAACTACACAGAATCTAGTTGCTGTCTTAACCAGCTGCAAAAAGTCATGGATTGCCGCACAACTCTTTCCCAGCGGGCTTTCTCTGTATTTTATGATGTTTATCCATCTGTTGTGCGCCACCAGAATGGtagttttggaaaaaaattgagagcTACTGCCAAAAGAATCTCAAGAAAGGGAAAGATTGTGTCTACTTGGAGGACTGCATTCACTGAAGCTGCTAATTTGCCTTGTTGGAATGTCCCCAATTACAGGGATGAAGGTGAACTAATTCCACAAATTGTTGAGGAAGTTTTGAGAAAGCTAAACATCAGATTGTTGTCTATTACTGAATTTCCTGTTGGACTGGATACCCATGTGAAACAAGTGATtcaatttattaagaaaaatcaatcaAGAAAAGTTTGCTTGATAGGGATATGGGGAATGGGAGGATCAGGTAAAACAACAACAGCCAAATATATCTATAACCAAATTCATCGCAAGTTTGTGTATCACAGTTTCATTGAAAATATTAGAGAAGTTTGTAAAAAAGATGATAGAGGGATTATTCATTTACAACAACAACTACTTTCAGATATCCTGAACACAATGGTGATGACAGGTGACATTGCATTAAGGAAAAATTTGATCCATAACAAATTTCAGGGGAGAAAGGTACTCATTGTACTTGATGATGTGACCACATTTGAACAGTTAAAATTGCTATGCGGTGGATATCCTAAATTGTTTGGTCCAGGAAGTGTATTCATTGTTACAACCAGAGATGTACGcatacttaatttatttaatgttgATTATGTGTGTACAATGAAGGAAATGAACGAAAATGAGTCCCTTGAGCTTTTCAGTTGGCATGCTTTTAGACAGCCTAGTCCAATAAACAACTTCAATGAACTCTCAAGGAATGTAGTTGCTTATTGCAGAGGATTACCATTGGCTCTTGAAGTCCTTGGTTCTTACTTATATCagagggaagaagaagaatggataAGTGCACTCTCGAAATTAGAGAGAATTCCCAATGATCGAGTGCAACAGAGACTGAGAATAAGCTATGATGGTTTAGAGTATGGTATGGCAAAGGACATATTTCTTgatatatgttgtttttttatcgGCATGGATAGAGCCTATGTTACCGAGATACTAAATGGCTGTGAACTTGATGCTGATATTGCAATAACTATACTCATAGAGCGGAGCCTCCTAAAAGTTGAGAAGAATAACAAGCTTGGAATGCACGATTTAATAAGAGACATGGGAAGAGAAATTGTTCGCGAAAGTTCAACAGAAGAACCTGGGAAGCGTAGTCGATTGTGGTTTCACGAAGATGTACATGATATTTTGACCACAAATTCTGGAACAGAATCTGTAGAGGGATTGGTTTTGAAGTCACAAGGAACTGGCAGAGTTTGCTTCAGTACTGATTCTTTCAAGGAGATGAAGAAACTCAAACTTCTGCAACTTGATTGTGTTGACCTCACCGGAGACTATGGCAACCTTTCTAAAGAACTGAGATGGGTCCATTGGCAAGGATTTACCTCCAACTATATACCTGATGACTTTCATCAAGGAAATCTAGTTGTTTTTGAATTAAAACACAGCAATATCAAACAAGTATGGAATGAAACCAAgGTTCTGGTGAATCTAAAAATTCTCAATCTCAGCCATTCGAGATACTTGAAAAGATCCCCAGACTTTTCAAAATTACCAAATCTTGAAAAGATCATTATGAAAGATTGTCCAAGTTTGGTTGAGTTACACCCATCCATTGGAGATCTCAGTGATCTTcttttgataaatttgaagGACTGTACAAGTCTTAGCAATCTTCCAAAGAATATCTATCAACTGAAATCTTTGAAAACTCTCATCCTTTCTGGTTGTTCAAAGATTGACAACTTGGAAGAAGACATTGTGCAAATGGAATCCTTGACTACACTGGTTGCAGACAATACAACTATTAAAGAAGTGCCGTTTTCAATAATAAGATCGAAAAGCATCGATTATATATCCTTATGTGGATATCAAGGATTATCACATGATGTTTCTCCTTCTCTCATTTGGTCTTGGATGTCACCGACCATGAGTTCTCGACCCCATATTTCCCCATTTTGGAATATTTCATATTGTGTAGCTTCTGTTGATGTGCAGAAAAATAACTCGGGCTTTCTATCACCAATGATCGGCAGACTTTTACGACCGAGAACTATTGTGGCACAATTCCACTCAAAGAATCAACTAACTCAAGAATTACGAAGAATTCTTGATGATCAATATCATGTTAGTTATACCAAAGTGGAAACATCACATGCATCACAAATCTCAAATCATTCCTTGAGATCACTTTTGATCGGAATGGGAAGTTTCCACATAGTCATTGATACTCTTAGCAAGAGCATATCACAGGGATTAACAACCAATGATTCTGGTAAATTTTTCCTTCCGGGGGACAATTATCCTTCTTGGTTAGCATATACAGGTGAAGGACCTTCAATACATTTTCAAGTGCCTGAGGATAGTGATTGCTGCATGAAGGGAATAGCTTTGTGTGTTGTTTATTCATCAACATCTGAAAACATGGAAACTGAATGTCTCGCtagtattttaataattaattacacaaaattCACTGTTCATATATACAAGCGGGATACAATAATGTCCTTTAATGATGAAGATTGGAAGAATGTAACATCAAATCTAGAACCTGGTGACAATGTAGAGATATTTGTAGCTTTTGGGCATGGGTTGATTGTTAAGGAGACAGCTGTCTATCTAATATATGGCCAGTCAATTACCATGGAAGTTGATGCTAATGAGAAAGATGTTTTGAAGAATGATGTTGATGCTAACTCTAATCAAAGGGATATGGATGAAGCAAGTAAAAGACACGAGGAAATTCTGAATCAATCAGAGGATGCCGATGAGAAAGGGGCTTTGGTGAATGATGTTGATGTCAACAGAAgGATGGCTGAACAAATTTCATATGCTGTTGCTGAAAGGCTCTTTAACAGgTTGGCTTCTACAGCTTTTTGTGAACATGGACGGATTTATGGTGTTACGGATGAGTTGGAAAGGCTTAAGAACTCCGTTGAACACATAAAAGTTGTGCTCCTTGATGCCCAAGAGAAACAGGAACAAAATTGTGTTGTACAAAGTTGGATAAGAAGGGTTGAAgatttgcttcatcttgcagATGACTTGCTAGATGAGTTTATGATTGAAGGTATGAGATACCAAGTGGATGCAGGTGATAAGAAAAAAATGACATGGGTATTTCGTTCATTATCTTCAAACTATAGTTATCTTCGCCGAACAATGGTTcctaaaattggaaaaatacaaaaaaagttTGATGATGTGGTGGAAGAAATGGTAAAGTTGAATCTAAGCCCAAAAGCAATGGTGGTTAAGCAAACTGACAATTTGAGGAGCaaatctatttcttttttgttagaATCAGAAATCATTGGAAGGTTAGATGATAAAAAGGAGATTATAAATATCTTGAAGCAACCACATGGAAATATCTCGTCAGTTGCTATTGTAGGTATTGGAGGTATAGGCAAGACAACTCTTGCTCAGTTTGTATATAATGATGTTGAAGTGCAAAATCTTTTTGAAAAGCGAATGTGGGTATGTGTATCTAATAACTTCGATGTCAAGACTATTGTGAAGAAAATGCTGGAGTCATTAACCGAAAGCAAAGTTGATGATAAGTTAACATTTGAATACTTACAGCAAAAActtcatcaaaatttaattgGTAAAAGATACTTGTTAGTCTTGGATGACATTTGCAATGCTAGTCATGAAAAATGGACTCAATTGAGAACTAATTTGATGTGTGGTGCTCAAGatagtaaggttttaatgacAACTCATAGTAAAATTGTGTCACAGAGACTGGAAGTAAACTACCTATGTGTTTTGACTGGTTTGACTCTAGATGTATCTTGGAGTATGTTAAAGAAAATTACATTTGGGAATAAAACTAGTGGAGTGAATAAAAGACTTgaaattggtaaaaaaatagcAGAAAAGTGCAGGGGAGTTCCACTAGCAATTAGAATACTGGGAGGCCTATTACAAAGTGAAAGTGATGAAAGGGAATGGATCAATGTCTTACAAGGTGACTTTTGGGAATCATGCGAAGACAAAGAAACCATCATGTCGATCTTGAAACTGTGTTACCGAAGTTTGTCGCTTCAGTTGAGACAGTGTTTTGCTTATTGCTCTTTATTTCCCAAGGATTGGGAAATTGAGAAGGATTTGTTGATTCAACTTTGGATGGCACAAGGTTATCTTGAATGCTCAGATGAAAAACAACTTAGAGAAGATGCCGGCAACGAATTTGTGAAGATTTTCTTGATGAAGTCATTTTTCCAAGATGCAAAAGTGGGAGAAGATGGTGATATAGCTAGTTTTAAAATGCATGATCTAATGCATGATCTTGCAACACAAGTAGCTGGCAGTGATTGTTGTTATTTGGATAGGGAGACAAAGATATGGGTACAAAGACCCACACATGTATCGTTGGAACCCGGTGCAGTTCATTTGTTGGACTCATTAGATGCAAGCAGGCTGCGAACTTTGATTTTGCTGTCTTCCAATGAGGGAGTGGAACTTAATGGGGATGAATTGATAGTTATTACCAAATTCAAAAACTTACGTGTCTTGAAGCTGTCATATTGTTCTTTAAGCAAGTTATCTAGTTCAATTGGAAAATTGAAACATTTAAGATATCTTAACTTATCACACTGTAGAGGGCTGGGAAGTCTTTACAAATCCTTAAGCAGTCTTGTTTTATTACAAACACTAATATTGACACCTAATGAAAAAGTGAAGTTCACTACAAAGGTTGTATCAAAATTAGTCAATCTGAGACACCTTCACATCTCTGATTGGGAATTCTCCAGAGATGAGACGCTATTTGGATTTGTAAAATTGAGCATTTGGCAGCATAAGGGgatgattttttcaaaatggatTTCTACACTGACAAATATTGTTGaaatctctttctttttgtgTGGAAGTCTCCAGTGTCTGCCACCATTGGAGCGTCTCCCATTCCTTAAGTCACTTCACATAAGTTTCCTTGAAGAACTGGAGTACATATACTATGAACAAGATTTTTCTTCAGCCTTCTTTCCCTCTTTGGAGAGCCTCTCTTTGCAGTTTTGTTATAAGTTGAAGGGATGGTGGAGGATGGAAGATGATTTCAATAATACCAACTGTTCACAAAATCTCTCCTTGCCTCCCTTTCCTCGTCTTTCTCAATTATCAATCATAGGATGTCTGATGTTGACCTCCATGCCTACCTTTCCAAATCTTGAGAGCGGATTGGAATTGTACGATAGTAGGGTGGAAACGTTGGTAGCTACACTGAACACGGTAGCATTAGAAAGTTTGAACGACTTCCCTCCCCTTTCCATGCTCAAATCCTTGTACATTGACGGAGTAAGCCTGAATGTGAAAAGTATCCCAGAGGATTGGATGCAAAATCTTACTTCTCTCCGtcttcttcaaattaattgGTTCTCATGTCAAGCATTTCAGGAAATCGAAACTTGGTTTAAGGGTGACCTCAAGTCTCTTACTTCTCTGCAAACAATTGCCTTTCACAATTGTGAAGACCTTGAGGCATTGCCAGATTGGATATGCAATCTCTCATCGCTTCAGCATCTTAGGGTGTATGATTGCATAAATAATCTTATCATCTCTTCATTAAAAAGGGAGGAGACACTTCTTTTATCAGACAAAGCAGTACATCAGAGGTTTCCTCATGATTCTTTATTAGAGGGAGCGACAGGTATTGGTGCTGTCGAGGATTGGAATCCATGCTGCACGATCATTTCCTTTGATGGCTCCAATTCCATTTTAGCATCATCAACTTCCACAATAATTGACTGGCCAGATATTAGATACGCAATTGTCTTCTTAACAATCAATCCATGCCCAAAAGCTACACAAATCTTCACATTGTCACCAGGTCCTAGATTTGATGTTACACTCTTCCAATCTTCGTCATTAAAGGACGTGATTGTGTCTCGCTTGTAA 6300 0.3587 MDSSSSWSSNPRWIHDVFINFRPEDTSKSFVSHLIDAFTKARINTYIDSQPNTGTELGPELLRAIEKSRISIIVFSKNYTESSCCLNQLQKVMDCRTTLSQRAFSVFYDVYPSVVRHQNGSFGKKLRATAKRISRKGKIVSTWRTAFTEAANLPCWNVPNYRDEGELIPQIVEEVLRKLNIRLLSITEFPVGLDTHVKQVIQFIKKNQSRKVCLIGIWGMGGSGKTTTAKYIYNQIHRKFVYHSFIENIREVCKKDDRGIIHLQQQLLSDILNTMVMTGDIALRKNLIHNKFQGRKVLIVLDDVTTFEQLKLLCGGYPKLFGPGSVFIVTTRDVRILNLFNVDYVCTMKEMNENESLELFSWHAFRQPSPINNFNELSRNVVAYCRGLPLALEVLGSYLYQREEEEWISALSKLERIPNDRVQQRLRISYDGLEYGMAKDIFLDICCFFIGMDRAYVTEILNGCELDADIAITILIERSLLKVEKNNKLGMHDLIRDMGREIVRESSTEEPGKRSRLWFHEDVHDILTTNSGTESVEGLVLKSQGTGRVCFSTDSFKEMKKLKLLQLDCVDLTGDYGNLSKELRWVHWQGFTSNYIPDDFHQGNLVVFELKHSNIKQVWNETKVLVNLKILNLSHSRYLKRSPDFSKLPNLEKIIMKDCPSLVELHPSIGDLSDLLLINLKDCTSLSNLPKNIYQLKSLKTLILSGCSKIDNLEEDIVQMESLTTLVADNTTIKEVPFSIIRSKSIDYISLCGYQGLSHDVSPSLIWSWMSPTMSSRPHISPFWNISYCVASVDVQKNNSGFLSPMIGRLLRPRTIVAQFHSKNQLTQELRRILDDQYHVSYTKVETSHASQISNHSLRSLLIGMGSFHIVIDTLSKSISQGLTTNDSGKFFLPGDNYPSWLAYTGEGPSIHFQVPEDSDCCMKGIALCVVYSSTSENMETECLASILIINYTKFTVHIYKRDTIMSFNDEDWKNVTSNLEPGDNVEIFVAFGHGLIVKETAVYLIYGQSITMEVDANEKDVLKNDVDANSNQRDMDEASKRHEEILNQSEDADEKGALVNDVDVNRRMAEQISYAVAERLFNRLASTAFCEHGRIYGVTDELERLKNSVEHIKVVLLDAQEKQEQNCVVQSWIRRVEDLLHLADDLLDEFMIEGMRYQVDAGDKKKMTWVFRSLSSNYSYLRRTMVPKIGKIQKKFDDVVEEMVKLNLSPKAMVVKQTDNLRSKSISFLLESEIIGRLDDKKEIINILKQPHGNISSVAIVGIGGIGKTTLAQFVYNDVEVQNLFEKRMWVCVSNNFDVKTIVKKMLESLTESKVDDKLTFEYLQQKLHQNLIGKRYLLVLDDICNASHEKWTQLRTNLMCGAQDSKVLMTTHSKIVSQRLEVNYLCVLTGLTLDVSWSMLKKITFGNKTSGVNKRLEIGKKIAEKCRGVPLAIRILGGLLQSESDEREWINVLQGDFWESCEDKETIMSILKLCYRSLSLQLRQCFAYCSLFPKDWEIEKDLLIQLWMAQGYLECSDEKQLREDAGNEFVKIFLMKSFFQDAKVGEDGDIASFKMHDLMHDLATQVAGSDCCYLDRETKIWVQRPTHVSLEPGAVHLLDSLDASRLRTLILLSSNEGVELNGDELIVITKFKNLRVLKLSYCSLSKLSSSIGKLKHLRYLNLSHCRGLGSLYKSLSSLVLLQTLILTPNEKVKFTTKVVSKLVNLRHLHISDWEFSRDETLFGFVKLSIWQHKGMIFSKWISTLTNIVEISFFLCGSLQCLPPLERLPFLKSLHISFLEELEYIYYEQDFSSAFFPSLESLSLQFCYKLKGWWRMEDDFNNTNCSQNLSLPPFPRLSQLSIIGCLMLTSMPTFPNLESGLELYDSRVETLVATLNTVALESLNDFPPLSMLKSLYIDGVSLNVKSIPEDWMQNLTSLRLLQINWFSCQAFQEIETWFKGDLKSLTSLQTIAFHNCEDLEALPDWICNLSSLQHLRVYDCINNLIISSLKREETLLLSDKAVHQRFPHDSLLEGATGIGAVEDWNPCCTIISFDGSNSILASSTSTIIDWPDIRYAIVFLTINPCPKATQIFTLSPGPRFDVTLFQSSSLKDVIVSRL 2099
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tsu08g00271 2099 Gene3D - 1218 1386 IPR027417 -
Tsu08g00271 2099 Gene3D - 182 345 IPR027417 -
Tsu08g00271 2099 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 180 445 IPR027417 -
Tsu08g00271 2099 CDD AAA 1236 1345 - -
Tsu08g00271 2099 Pfam NB-ARC domain 194 420 IPR002182 GO:0043531
Tsu08g00271 2099 Pfam NB-ARC domain 1241 1478 IPR002182 GO:0043531
Tsu08g00271 2099 Coils Coil 1029 1056 - -
Tsu08g00271 2099 PANTHER LEUCINE-RICH REPEAT-CONTAINING PROTEIN 18 1007 IPR044974 GO:0006952
Tsu08g00271 2099 PRINTS Disease resistance protein signature 214 229 - -
Tsu08g00271 2099 PRINTS Disease resistance protein signature 291 305 - -
Tsu08g00271 2099 PRINTS Disease resistance protein signature 694 710 - -
Tsu08g00271 2099 PRINTS Disease resistance protein signature 385 399 - -
Tsu08g00271 2099 SUPERFAMILY L domain-like 491 762 - -
Tsu08g00271 2099 SUPERFAMILY L domain-like 1556 1984 - -
Tsu08g00271 2099 Gene3D - 9 181 IPR035897 -
Tsu08g00271 2099 Gene3D - 1078 1186 - -
Tsu08g00271 2099 ProSiteProfiles TIR domain profile. 13 179 IPR000157 GO:0007165
Tsu08g00271 2099 PANTHER RESISTANCE PROTEIN (TIR-NBS-LRR CLASS), PUTATIVE-RELATED 18 1007 - -
Tsu08g00271 2099 Gene3D Ribonuclease Inhibitor 540 869 IPR032675 -
Tsu08g00271 2099 Pfam TIR domain 15 182 IPR000157 GO:0007165
Tsu08g00271 2099 PANTHER RESISTANCE PROTEIN (TIR-NBS-LRR CLASS), PUTATIVE-RELATED 1221 1456 - -
Tsu08g00271 2099 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 1219 1491 IPR027417 -
Tsu08g00271 2099 Coils Coil 1103 1123 - -
Tsu08g00271 2099 PANTHER LEUCINE-RICH REPEAT-CONTAINING PROTEIN 1221 1456 IPR044974 GO:0006952
Tsu08g00271 2099 SUPERFAMILY Toll/Interleukin receptor TIR domain 4 154 IPR035897 -
Tsu08g00271 2099 Gene3D - 350 434 IPR042197 -
Tsu08g00271 2099 Gene3D - 1393 1476 IPR042197 -
Tsu08g00271 2099 Gene3D - 1477 1568 IPR036388 -
Tsu08g00271 2099 Gene3D Ribonuclease Inhibitor 1598 1859 IPR032675 -
Tsu08g00271 2099 Gene3D Ribonuclease Inhibitor 1860 2008 IPR032675 -
Tsu08g00271 2099 Pfam Rx N-terminal domain 1078 1160 IPR041118 -
Tsu08g00271 2099 SMART till_3 14 153 IPR000157 GO:0007165
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tsu08g00271 Tsu-Chr8 2394407 2406422 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tsu08g00271 15 740 WRKY Transcription Factor Family AT4G12020 27.851 6.99e-65 243
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tsu08g00271 - - mtr:MTR_8g011850 2903.62