LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Tsu08g00265	AtggattcttcttcttcatcctctAATACTCGATGGATACACGACGTGTTCATCAATTTTAGAGGAGACGACACACGTAAGACTTTTGTTTCTCATCTTCATGCTGCACTCTCAAACGCTGGAATCAGCACTTACACAGACAGCAAACTTGGCAAGGGAAATGAGCTGGGACCAGAACTGTCCCGAGCAATAGAATGGTCTCATATATCCATTGTTATTTTCTCCAAAAGATATACCGAATCTTGTTGGTGTCTTAATGAATTGAAAAAGATCATGGAATGCCACCAAACTCATGGTCAGCTTGTTCTGCCCATATTTTACGATGTTGATCCATCAGTTGTGCGTCGTCAAAAGGGTGCTTTCGGAAACTCTTTGCTATCAACAGTAGAAAGAAATTACTTACACTCCGGAGAGGAAAGGATGGAATATGTGCTGTCTAGATGGAGGAGTGCACTCACCCAAGCTGCTCATTTGTCTGGTTGGGATGTCTCCAATAGCAGGAGGGAAGCTGAACTAATGCATCAAATTGTTGACGATGTTTTGGAAAAACTGCACAGCGCATTCTTGCCTATTACTAACTTTCCTGTTGGATTAGAATCCCGTGTGCAAGAAGTAATTGAATTTATTGTAACTCAGCCGAGCAAAGTTTGTATGATAGGAATATGGGGAATGGGTGGATTAGGTAAAACAACCACAGCGAAAGCCATATACAATCAAATTCATCGCAAATTTGTGGATAAAAGTTTCATTGAAAATATTAGAGAAGTATGTGAAAAAGATAATAGAGGGATTATTCATTTACAACAGCAACTTCTTTCAGATATCTTGAACTCAAAGGAGATTATACATAACATTGCATCGGGGACTGCTACAATAGAGAGAAGATTTCAAGGGAAAAGGGTACTCATTGTGCTTGATGATGTGACCACAATTAAACAGATAGAAGCACTAATTCGAAATCTTTCATTTTTTGGCTCAGGAAGCGTTTTCATTCTTACAACCAGAGATGCACGCCTGCTTAAGCTAACTAAAGTTGACTATGTTTGTACAATGAAGGAAATGGATGAAAAGGAGTCCCTTCAACTTTTCAGTTGGCATGCTTTTGGAAGACCTATTCCAATAAGAGACTTCATTGAACTCTCGAGGAACGTAGTGGATTATCGCGGAGGATTACCATTGGCTCTTGAAGTCCTTGGTTCTTACTTATATGAGAGGACAAAACAAGAATGGGAAAGTGTACTCTTGAAATTAGAGAGAATTCCCAATGATCAAGTGCAAGAGAAGCTGAGAATTAGTTATGATGGTTTAAAGGATGACATGGAAAAGGATATATTTCTTGACATATGTTGTTTCTTTATCGGAAAGGACAGAGCCTATGTTACAGAAATACTAAATGGTTGTGGATTTCATGCTGTTATTGGAATAGCCATCCTCATAGAGCGGAGCCTtgttaaaattgaaaagaataaCAAACTTAGAATGCATGATTTAATAAGAGACATGGGAAGAGAAATTGTTCGTGAAAGCTCAACAAAAGAGCCTGGGAAGCGCAGTCGATTATGGTTTCACCAGGATGCACAGGATATTTTGAACAAAAATTGTGGAACAGAAACTGTAGAGGGATTGGTTTTGAAGTTGCAAAGAACCCGCAGAGTTTGGTTCAGTGCTAATTCTTTCAAGGAAATGAAGAACTTGAGACTTCTACAACTTGATCGAGTTGACCGTACTGGAGATTATGAGCATCTTTCTAAAGAACTGAGATGGGTCCATTGGCAAGAATTTGCCTTGAACTATATACCTGATGACTTTTATTTGGGAAATCTAGTTGTTATTGACTTAAAACACAGCAATATCAAACAAGTTTGGAATGAAACTAAGTTGCTATGGAATCTAAAAATTCTCAATCTGAGTCATTCCAAGTACTTGAAAAGCACTCCTGACTTTTCAAAATCACCGAATCTAGaaaaactcatcatgaaggattGTCCAAAATTGTCTGAAGAACACCAGTCCATTGGAGATCTAAATCATCTTATTATGATAAATTTGAAGGACTGTACAAGTCTTAACAATCTCCCAAAGAAGATATATAAATTGAAATCGTTGAAAACTCTCATACTTTCTGGTTGCTCAAAGATTGACAGGTTGGAAGAAGACATAGTGCAGATGGAATCCTTGACAACACTGATCGCAAAAGATACAGCTATAAAAGAGGTACCCTATTCCATAATAAGATCGAAAAGCATAGGATTTATATCCCTATGTGGATATGAAGGATTATCACGTGATATTTTTCCTTCTCTCATTTGGTCTTGGATGTCACCAACAATGAATTATCTACCTCATAAGTCCCCATTTGGAAACATGGCTTTGTCTCTAGCTTCCATCAATGTACAGAATAATAATGCAGGCTTTCTATCACAAATGGTTAGGAGCCTTTCGCAACTCAGAACTGTTTGGGTACAATGCCGCTCAAACATTCAAATAACTCAAGAATTACGAAGAATTCTTGATGATCAATATGatgaaaattttacaaaatcagaAACACCTCATGCATCGCAAATCTCAAACATTTCCTTGAGATCGCTTTTAATCGGAATGGGAAGCTGCCACACAGTCATTAATACTCTTGGCAGGAGCATATCACAGGGATTAACAAGCAATGATTCTAGTGATTTTTTCCTTCCAAGTGGCAATCATCCTTCTTGGTTAGCCTATACAGGCGAAGGACCTTCAGCACAATTTCAAGTTCCTGAGGATATTAATTCTCACATGAAGGGAATAATCCTATGTGTTGTTTATTCATCAGCATCTGAAATCATGGGAGCTGAATGTCTTGCTAGTGTCTTGATCATTAATTACACAAAGTGCACCATCCAAATATACAAGCGCGACACAGTAATGTGCTTTAACGATGAAGATCGGAAGAATGTAACATCAAATCTTGAACCTGGTGACGATGTGGAGATTCTTGTAGTTTTTGGGCATGGAGTGATTGTTAAGAAGACTGTTGTTTATCTAATACATGGTCAGTCAATTACTATGGAAGTTGAGTCATCAACTAACATGGAAATGGAGCCATCATCCGAACTTTACACACAGCCTTCACCTGAAGTGGATGCGCAACCATCACCTAATGTGAAAGTGGAGGAGTCAACTATTGTTCAAACCGATCTGCCACCAGAAGTGAAGGTGCAGTCGTCATCTACCATGGAAATGAAGCCGTTACCAAAGCTCAATAAAAGTATCTTTACAAAACTTGGAAAAAGAATTGGTGCATGTTTATGCTTGAACCAGCATAGAGATAAAGGTTTGAACAATTTTTGA	3330	0.3751	MDSSSSSSNTRWIHDVFINFRGDDTRKTFVSHLHAALSNAGISTYTDSKLGKGNELGPELSRAIEWSHISIVIFSKRYTESCWCLNELKKIMECHQTHGQLVLPIFYDVDPSVVRRQKGAFGNSLLSTVERNYLHSGEERMEYVLSRWRSALTQAAHLSGWDVSNSRREAELMHQIVDDVLEKLHSAFLPITNFPVGLESRVQEVIEFIVTQPSKVCMIGIWGMGGLGKTTTAKAIYNQIHRKFVDKSFIENIREVCEKDNRGIIHLQQQLLSDILNSKEIIHNIASGTATIERRFQGKRVLIVLDDVTTIKQIEALIRNLSFFGSGSVFILTTRDARLLKLTKVDYVCTMKEMDEKESLQLFSWHAFGRPIPIRDFIELSRNVVDYRGGLPLALEVLGSYLYERTKQEWESVLLKLERIPNDQVQEKLRISYDGLKDDMEKDIFLDICCFFIGKDRAYVTEILNGCGFHAVIGIAILIERSLVKIEKNNKLRMHDLIRDMGREIVRESSTKEPGKRSRLWFHQDAQDILNKNCGTETVEGLVLKLQRTRRVWFSANSFKEMKNLRLLQLDRVDRTGDYEHLSKELRWVHWQEFALNYIPDDFYLGNLVVIDLKHSNIKQVWNETKLLWNLKILNLSHSKYLKSTPDFSKSPNLEKLIMKDCPKLSEEHQSIGDLNHLIMINLKDCTSLNNLPKKIYKLKSLKTLILSGCSKIDRLEEDIVQMESLTTLIAKDTAIKEVPYSIIRSKSIGFISLCGYEGLSRDIFPSLIWSWMSPTMNYLPHKSPFGNMALSLASINVQNNNAGFLSQMVRSLSQLRTVWVQCRSNIQITQELRRILDDQYDENFTKSETPHASQISNISLRSLLIGMGSCHTVINTLGRSISQGLTSNDSSDFFLPSGNHPSWLAYTGEGPSAQFQVPEDINSHMKGIILCVVYSSASEIMGAECLASVLIINYTKCTIQIYKRDTVMCFNDEDRKNVTSNLEPGDDVEILVVFGHGVIVKKTVVYLIHGQSITMEVESSTNMEMEPSSELYTQPSPEVDAQPSPNVKVEESTIVQTDLPPEVKVQSSSTMEMKPLPKLNKSIFTKLGKRIGACLCLNQHRDKGLNNF	1109

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Tsu08g00265	1109	SUPERFAMILY	L domain-like	543	833	-	-
	Tsu08g00265	1109	CDD	AAA	196	341	-	-
	Tsu08g00265	1109	PRINTS	Disease resistance protein signature	295	309	-	-
	Tsu08g00265	1109	PRINTS	Disease resistance protein signature	218	233	-	-
	Tsu08g00265	1109	PRINTS	Disease resistance protein signature	697	713	-	-
	Tsu08g00265	1109	PRINTS	Disease resistance protein signature	388	402	-	-
	Tsu08g00265	1109	Gene3D	-	353	437	IPR042197	-
	Tsu08g00265	1109	Gene3D	-	7	186	IPR035897	-
	Tsu08g00265	1109	SMART	till_3	13	158	IPR000157	GO:0007165
	Tsu08g00265	1109	Gene3D	Ribonuclease Inhibitor	526	871	IPR032675	-
	Tsu08g00265	1109	Pfam	TIR domain	14	187	IPR000157	GO:0007165
	Tsu08g00265	1109	Pfam	NB-ARC domain	199	427	IPR002182	GO:0043531
	Tsu08g00265	1109	SUPERFAMILY	Toll/Interleukin receptor TIR domain	3	161	IPR035897	-
	Tsu08g00265	1109	PANTHER	RESISTANCE PROTEIN (TIR-NBS-LRR CLASS), PUTATIVE-RELATED	17	1011	-	-
	Tsu08g00265	1109	SUPERFAMILY	"Winged helix" DNA-binding domain	424	530	IPR036390	-
	Tsu08g00265	1109	ProSiteProfiles	TIR domain profile.	12	184	IPR000157	GO:0007165
	Tsu08g00265	1109	PANTHER	LEUCINE-RICH REPEAT-CONTAINING PROTEIN	17	1011	IPR044974	GO:0006952
	Tsu08g00265	1109	Gene3D	-	187	348	IPR027417	-
	Tsu08g00265	1109	SUPERFAMILY	P-loop containing nucleoside triphosphate hydrolases	185	448	IPR027417	-

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Tsu08g00265	Tsu-Chr8	2337467	2341784	Dispersed/Wgd

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Tsu08g00265	14	743	WRKY Transcription Factor Family	AT4G12020	31.425	8.43e-87	307

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Tsu08g00265	-		-	mtr:MTR_8g011850	1348.95