Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tsu08g00263 ATGGCGCCAAACGCTGCGGCGGTGAAACAAGCGGAGCTGTTAAGAAATGACGGTAACATTTACTTCAAGAAAGCCCGTTTTGGTGCTGCCATCGATGCATACACTGAGgCAATTACGCTATGCCCTAATGTTCCGGTTTATTTTACGAATCGTGCTCTATGCCATCGCAGGCGCaaTGATTGGGAGAGGGTTGAGGAAGACTGTAGAAGGGCAATTCAGCTGGACAGCAATTCGGTTAAGGCACACTATATGTTGGGTCTTGCGTTGCTAGAGAAAAAAGAACTTACGAAAGGAATCAAAGAATTGGAAAGGGCTTTGAATCTTGGGAGAGGGGCCAATCCAAAGGGCTATATGGTAGAAGAAATATGGCAAGTGCTCGCGAAGGCAAAATACAAAGAGTGGGAACGTTCTTCGTCCCAACGATCATGGGAATTGCAGAGCTTAAAAGAAGCTTGCGAGTCTGCTCTAAAGGAAAAACATTTTCTCGGAGTCTCTGAGATGGAAGGATTTGTAGATGATGCTACTACTTCCCATTTGAAACAGTTGGAGGCTTTAGAAACAGTCTTCGAAAAAGCTGCAGAGGATGACACACCTTCTGAGGTGCCGGATTATCTATGCTGTAGAATAACACTTGATATTTTTCATGATCCTGTAATCACTCCAAGTGGACTTACATATGAGAGGGCAGTGATTCTTGAGCATCTTCAGAAGGTGGGTGGATTTGATCCGATAACGAGGGAACCACTTGATTCATCACAACTAGTACCAAATTTGGCCATTAAGGAAGCCGTTGAGGAATACTTGGAAAAACATGGATGGGCTTACAAGATAGATTAA 837 0.4397 MAPNAAAVKQAELLRNDGNIYFKKARFGAAIDAYTEAITLCPNVPVYFTNRALCHRRRNDWERVEEDCRRAIQLDSNSVKAHYMLGLALLEKKELTKGIKELERALNLGRGANPKGYMVEEIWQVLAKAKYKEWERSSSQRSWELQSLKEACESALKEKHFLGVSEMEGFVDDATTSHLKQLEALETVFEKAAEDDTPSEVPDYLCCRITLDIFHDPVITPSGLTYERAVILEHLQKVGGFDPITREPLDSSQLVPNLAIKEAVEEYLEKHGWAYKID 278
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tsu08g00263 278 Pfam U-box domain 201 273 IPR003613 GO:0004842|GO:0016567
Tsu08g00263 278 Gene3D Tetratricopeptide repeat domain 4 141 IPR011990 GO:0005515
Tsu08g00263 278 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 199 277 IPR013083 -
Tsu08g00263 278 PANTHER E3 UBIQUITIN-PROTEIN LIGASE CHIP 5 277 IPR045200 GO:0000209|GO:0061630
Tsu08g00263 278 Pfam Tetratricopeptide repeat 80 108 IPR019734 GO:0005515
Tsu08g00263 278 Pfam Tetratricopeptide repeat 18 43 IPR019734 GO:0005515
Tsu08g00263 278 ProSiteProfiles U-box domain profile. 200 274 IPR003613 GO:0004842|GO:0016567
Tsu08g00263 278 CDD RING-Ubox_CHIP 201 267 IPR045202 -
Tsu08g00263 278 SUPERFAMILY RING/U-box 193 275 - -
Tsu08g00263 278 PANTHER OS08G0113300 PROTEIN 5 277 - -
Tsu08g00263 278 SMART Ubox_2 204 267 IPR003613 GO:0004842|GO:0016567
Tsu08g00263 278 SUPERFAMILY TPR-like 9 127 IPR011990 GO:0005515
Tsu08g00263 278 SMART tpr_5 45 78 IPR019734 GO:0005515
Tsu08g00263 278 SMART tpr_5 79 112 IPR019734 GO:0005515
Tsu08g00263 278 SMART tpr_5 11 44 IPR019734 GO:0005515
Tsu08g00263 278 ProSiteProfiles TPR repeat profile. 11 44 IPR019734 GO:0005515
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tsu08g00263 4 277 U-box Gene Family AT3G07370 68.978 2.90e-140 394
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tsu08g00263 K09561 - gmx:100796519 471.855