Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tsu08g00253 ATGGCTGAACAAATTCCATATGGTGTTGCTGCAAGCCTAGTTAACAGGTTGGCTTCTGCAGCTTTTCGTGAATTTGGACGGATTTATGGTGTTATGGATCAGTTGGAAAGGCTTAAGGATACAGTTGAATCCATCAGAGCTGTGCTTCTTGATGCTGAGGAGAAACAAGAGCAAAGTCATGCTGTGCAAATCTGGATAAAAAGACTCAAAGATCATGTACTTCATCCTGCTGATAACTTGCTTGATGAATTTGTTATCGAAGATATGAGACACAAAATGGATGAATCTCATAAGAACAAAGTGAGACAGGTACTTCATTCTTTATCTCCTAACAGAATTGCTTTTCGCCGTAAAATGGCTCATGagattgaaaaaatacaaaaaaaacttgatgATGTGGTGAAAGATATGTCTGGGTTGAAACTTAACCCTGATATTGTTGTGGTTGAGCAAAGTAACACTATAAGGAGGGAAACTAGTTCTTTTGTGTTACAATCAGATATCATTGGAAGAGAAGATGATAAAAATGAGATTATAAGGTTGTTGAGACAATCACATGAAAATCAACATATCTCTGTGGTTGCTATTGTTGGGATTGGTGGTTTGGGAAAGACCGCTCTTGCTCAATTGGTATATAGTGATGGTGAAGTAACAAAGTTTTTTGATAAAAGTATGTGGGTATGTGTCTCTGATAACTTTGATGTCAAGACTATTGTGAAGAACATATTGGAGTCATTAACCAACACCAAAATTGATGACACATTATCACTGGACAACTTGCAAAAAATGTTTCGTGACAAATTGGTTGGTAAGAGATACTTGTTGATTATGGATGACATTTGGAATGAGAGTTTTGAAAAATGGGCTCAATTGAGGACTTACTTGATGTGTGGTGCTCAAGGTAGTAAGATTTTAGTGACAACTCGTAGTAAAACCGTGGCAAAGACAATGGGTGTAAGTGACCCCTATGTTTTGAATGGTTTGACTCAAGAAGAATCATGGGGTTTGTTAAAGAAGATTGTGTTTGGGCACGATACCATTGAAGTGAATCCATCTTTTGAATCAATTGGTAAGAAGATAGCAAAAAAGTGCAGCGGTGTTCCACTAGCAATCAGAACACTTGGAGGCCTACTACAGGGTAATATTGAAGAAAGAGAATGGATTGATGTTTTACAAGGTGACTTTTGGAAATCATGCGAAGACGAAGAAAGCATCATGCCAGTGTTGAAACGAAGTTACCAAAACTTGACGCCTCAACTGAGACAATGTTTTGCCTACTGCTCATTATATCCTAAGGATTGGAAAATACGGAAGGACGAGTTGATTCAACTTTGGATGGCACAAGGTTATTTTGAATGTTCAGGTGGAAAGAAGCTCATGGAAGATATCGGTAACgaatttgtaaatattttcttGATGAAGTCATTATTCCAAGATGCTCAACTTCATCCTTTTACCGGTGATATAGAAAGTTTCAAAATGCATGATTTAATACATGATCTTGCAATGCAAGTAGCTGGAAATGATTGTTGTTACTTGGACAGTGAAACAAAAAGACTTGTAGGAAGTCCCATGCATGTAATGTTGAAAAGTGATGATATTGGTTTGCTAAAATCAGTGGATGCAAGCAGGATGCGAACTTTGATTTTGTTGTCCGGTGATGAATGGATTATGAACGAGAAGGAATTGTctgttattttaaaattcaaatacttACGCGTCTTGAAGTTGTCACGTTGTTCTTTAAATAAGCTGTGTGATTCAATTGCAGAATTGAAGCATTTAAGATATTTTAAGTTATTGCACTGCAAAGGACTAGGAAGTCTTTCCAAATCCATAAGTAATCATGTTTGCTTACAAATACTAATATCGATTATGTGTGAAGAAGTTGAATATTCTACAAAAGATATctcaaaattaatcaatttgagacattttcatattgaaaatttgaaagccTCTGAAAAGAAGACAACGTCTCGATTTGGAAAATTGAGTGTGGGGGGACAGTATAACAGtaccattttttcaaatttttttgtttcactCACAAATATTGTTCGAATCTCTCTCGAAGGTTGTCATGGTTTGAAGTATCTCCCACCAATGGAACGTCTCCCGTTTCTTAAGTCAGTTACTATACGTAATCTTCATGAATTGGAAGTCATATATTATGAAGAGCCTCTTTTATCGGAATCATTTTTCCCATCCTTGGAGGAACTCAAATTTATCAACTGTCGTGAGCTGAGGGGATGGAGTAGGATGATGGATGATgtcaatgatgatgatgatagctCTTCACAGTCATACCATCTCTCCTTTCCTCGTCTTTCTCAATTAAATATACGTTTCTGTTCAAAGTTGACTCACATGCCTACTTTTCCAAAACTTGACAAGAGATTGGTATTATTAGAGGCTAGAGTGGAGCCATTGGAAACAACATTAAAGATGGTAGGTTCAAAGTGTTCGATTGAGTTCCCTCCTCTTTCCATGCTAAAATACTTGGAAATTGCCAAGAAGGGTCTAGATTTGAAAAAACTCCCAAACAATTGTCTGCAAAATCTGACTTCTCTCGAGGAATTAGTTTTAAATTCGCTCCCAAGTCAAACATTTCaggaaattgaaattttgtttaaggacaacctCAATTATCTTCCTTCATTGCAATGCGTTCAGTTTTGGCATTGTTCAGATCTAAAGGCACTGCCAGATTGGATTTGCAACCTCTCATCACTTGAGTATATCGGCATTAAGTTCTGTGAAAATTTGGCTTCACTGCCTGAAGGAATGCCTCGCCTTGCCAACTTGCAGGCCCTAGATATCATTCAATGTCCCCTTTTAATTGAAGAATGTGAGACACAAACAAGTGCAACATGGCCCAAAATTGCTCACATCCCAAACCTAGTCTTAAAAAGGAATTGGGAGGAATGA 2931 0.3538 MAEQIPYGVAASLVNRLASAAFREFGRIYGVMDQLERLKDTVESIRAVLLDAEEKQEQSHAVQIWIKRLKDHVLHPADNLLDEFVIEDMRHKMDESHKNKVRQVLHSLSPNRIAFRRKMAHEIEKIQKKLDDVVKDMSGLKLNPDIVVVEQSNTIRRETSSFVLQSDIIGREDDKNEIIRLLRQSHENQHISVVAIVGIGGLGKTALAQLVYSDGEVTKFFDKSMWVCVSDNFDVKTIVKNILESLTNTKIDDTLSLDNLQKMFRDKLVGKRYLLIMDDIWNESFEKWAQLRTYLMCGAQGSKILVTTRSKTVAKTMGVSDPYVLNGLTQEESWGLLKKIVFGHDTIEVNPSFESIGKKIAKKCSGVPLAIRTLGGLLQGNIEEREWIDVLQGDFWKSCEDEESIMPVLKRSYQNLTPQLRQCFAYCSLYPKDWKIRKDELIQLWMAQGYFECSGGKKLMEDIGNEFVNIFLMKSLFQDAQLHPFTGDIESFKMHDLIHDLAMQVAGNDCCYLDSETKRLVGSPMHVMLKSDDIGLLKSVDASRMRTLILLSGDEWIMNEKELSVILKFKYLRVLKLSRCSLNKLCDSIAELKHLRYFKLLHCKGLGSLSKSISNHVCLQILISIMCEEVEYSTKDISKLINLRHFHIENLKASEKKTTSRFGKLSVGGQYNSTIFSNFFVSLTNIVRISLEGCHGLKYLPPMERLPFLKSVTIRNLHELEVIYYEEPLLSESFFPSLEELKFINCRELRGWSRMMDDVNDDDDSSSQSYHLSFPRLSQLNIRFCSKLTHMPTFPKLDKRLVLLEARVEPLETTLKMVGSKCSIEFPPLSMLKYLEIAKKGLDLKKLPNNCLQNLTSLEELVLNSLPSQTFQEIEILFKDNLNYLPSLQCVQFWHCSDLKALPDWICNLSSLEYIGIKFCENLASLPEGMPRLANLQALDIIQCPLLIEECETQTSATWPKIAHIPNLVLKRNWEE 976
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tsu08g00253 976 Pfam NB-ARC domain 171 415 IPR002182 GO:0043531
Tsu08g00253 976 Gene3D - 327 412 IPR042197 -
Tsu08g00253 976 PRINTS Disease resistance protein signature 364 378 - -
Tsu08g00253 976 PRINTS Disease resistance protein signature 931 947 - -
Tsu08g00253 976 PRINTS Disease resistance protein signature 193 208 - -
Tsu08g00253 976 PRINTS Disease resistance protein signature 267 281 - -
Tsu08g00253 976 Gene3D - 10 126 - -
Tsu08g00253 976 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 150 427 IPR027417 -
Tsu08g00253 976 SUPERFAMILY L domain-like 482 963 - -
Tsu08g00253 976 Gene3D Ribonuclease Inhibitor 564 803 IPR032675 -
Tsu08g00253 976 Coils Coil 35 55 - -
Tsu08g00253 976 Gene3D - 413 505 IPR036388 -
Tsu08g00253 976 Gene3D Ribonuclease Inhibitor 813 969 IPR032675 -
Tsu08g00253 976 Coils Coil 116 143 - -
Tsu08g00253 976 Pfam Rx N-terminal domain 11 98 IPR041118 -
Tsu08g00253 976 Gene3D - 151 321 IPR027417 -
Tsu08g00253 976 PANTHER DISEASE RESISTANCE PROTEIN RP 34 870 IPR044974 GO:0006952
Tsu08g00253 976 CDD RX-CC_like 7 133 IPR038005 -
Tsu08g00253 976 PANTHER OS05G0414200 PROTEIN 34 870 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tsu08g00253 Tsu-Chr8 2254815 2259940 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tsu08g00253 191 505 WRKY Transcription Factor Family AT5G45050 25.000 1.21e-09 60.5
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tsu08g00253 - - mtr:MTR_8g027540 1185.24